data_YLS
# 
_chem_comp.id                                    YLS 
_chem_comp.name                                  "(1S,2S)-2-((S)-2-((((4-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H30 F N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-03-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        503.542 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YLS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LZV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YLS C11 C1  C 0 1 N N S N N N 8.707  19.829 27.713 2.851  0.494  -1.110 C11 YLS 1  
YLS C12 C2  C 0 1 N N N N N N 7.722  19.717 26.538 4.025  1.177  -0.405 C12 YLS 2  
YLS C13 C3  C 0 1 N N S N N N 7.340  21.067 25.930 3.521  2.411  0.345  C13 YLS 3  
YLS C14 C4  C 0 1 N N N N N N 6.377  20.894 24.783 4.657  3.080  1.087  C14 YLS 4  
YLS C19 C5  C 0 1 N N S N N N 9.030  18.482 28.320 3.370  -0.675 -1.949 C19 YLS 5  
YLS C17 C6  C 0 1 N N N N N N 6.525  21.874 26.952 3.033  3.488  -0.651 C17 YLS 6  
YLS C16 C7  C 0 1 N N N N N N 5.356  22.497 26.178 3.477  4.791  0.050  C16 YLS 7  
YLS C26 C8  C 0 1 Y N N N N N 6.151  25.609 28.041 -8.341 -0.644 -0.498 C26 YLS 8  
YLS C25 C9  C 0 1 Y N N N N N 7.419  25.504 27.452 -7.162 -0.806 0.205  C25 YLS 9  
YLS C24 C10 C 0 1 Y N N N N N 7.663  25.828 26.103 -6.352 0.286  0.458  C24 YLS 10 
YLS C23 C11 C 0 1 N N N N N N 9.037  25.701 25.450 -5.067 0.108  1.224  C23 YLS 11 
YLS C02 C12 C 0 1 N N N N N N 10.718 24.054 26.115 -2.761 -0.359 0.823  C02 YLS 12 
YLS C04 C13 C 0 1 N N S N N N 11.801 22.178 27.301 -0.363 -0.716 0.578  C04 YLS 13 
YLS C05 C14 C 0 1 N N N N N N 13.005 21.814 28.155 -0.094 -2.155 1.025  C05 YLS 14 
YLS C06 C15 C 0 1 N N N N N N 14.387 22.253 27.671 1.226  -2.211 1.795  C06 YLS 15 
YLS C07 C16 C 0 1 N N N N N N 15.475 22.094 28.778 1.091  -1.421 3.098  C07 YLS 16 
YLS C08 C17 C 0 1 N N N N N N 14.793 21.457 26.441 1.567  -3.668 2.115  C08 YLS 17 
YLS C09 C18 C 0 1 N N N N N N 10.483 21.549 27.837 0.645  -0.319 -0.470 C09 YLS 18 
YLS C27 C19 C 0 1 Y N N N N N 5.096  26.034 27.231 -8.709 0.611  -0.952 C27 YLS 19 
YLS C29 C20 C 0 1 Y N N N N N 5.279  26.354 25.900 -7.897 1.704  -0.698 C29 YLS 20 
YLS C30 C21 C 0 1 Y N N N N N 6.554  26.238 25.361 -6.721 1.540  0.009  C30 YLS 21 
YLS F28 F1  F 0 1 N N N N N N 3.858  26.153 27.754 -9.859 0.770  -1.644 F28 YLS 22 
YLS N03 N1  N 0 1 N N N N N N 11.583 23.615 27.106 -1.713 -0.623 0.017  N03 YLS 23 
YLS N10 N2  N 0 1 N N N N N N 9.915  20.477 27.255 1.905  -0.006 -0.109 N10 YLS 24 
YLS N15 N3  N 0 1 N N N N N N 5.275  21.714 24.929 4.612  4.411  0.900  N15 YLS 25 
YLS O01 O1  O 0 1 N N N N N N 10.532 23.431 25.075 -2.600 -0.289 2.026  O01 YLS 26 
YLS O18 O2  O 0 1 N N N N N N 6.511  20.162 23.794 5.488  2.500  1.754  O18 YLS 27 
YLS O20 O3  O 0 1 N N N N N N 7.838  17.925 28.864 4.378  -0.206 -2.847 O20 YLS 28 
YLS O21 O4  O 0 1 N N N N N N 9.941  22.054 28.838 0.322  -0.282 -1.638 O21 YLS 29 
YLS O22 O5  O 0 1 N N N N N N 10.041 25.273 26.393 -3.985 -0.172 0.296  O22 YLS 30 
YLS H1  H1  H 0 1 N N N N N N 8.238  20.451 28.489 2.349  1.212  -1.758 H1  YLS 31 
YLS H2  H2  H 0 1 N N N N N N 6.806  19.226 26.898 4.479  0.482  0.301  H2  YLS 32 
YLS H3  H3  H 0 1 N N N N N N 8.185  19.101 25.753 4.766  1.479  -1.145 H3  YLS 33 
YLS H4  H4  H 0 1 N N N N N N 8.236  21.624 25.617 2.721  2.138  1.033  H4  YLS 34 
YLS H5  H5  H 0 1 N N N N N N 9.725  18.667 29.152 2.547  -1.106 -2.520 H5  YLS 35 
YLS S1  S1  S 0 1 N Y N N N N 9.418  17.831 27.564 4.075  -1.939 -0.855 S1  YLS 36 
YLS H7  H7  H 0 1 N N N N N N 6.147  21.212 27.745 3.526  3.378  -1.618 H7  YLS 37 
YLS H8  H8  H 0 1 N N N N N N 7.149  22.662 27.399 1.949  3.455  -0.762 H8  YLS 38 
YLS H9  H9  H 0 1 N N N N N N 5.556  23.556 25.960 3.790  5.529  -0.688 H9  YLS 39 
YLS H10 H10 H 0 1 N N N N N N 4.421  22.411 26.751 2.665  5.188  0.658  H10 YLS 40 
YLS H11 H11 H 0 1 N N N N N N 5.996  25.370 29.083 -8.973 -1.497 -0.696 H11 YLS 41 
YLS H12 H12 H 0 1 N N N N N N 8.244  25.160 28.058 -6.873 -1.785 0.556  H12 YLS 42 
YLS H13 H13 H 0 1 N N N N N N 8.977  24.965 24.635 -4.844 1.021  1.776  H13 YLS 43 
YLS H14 H14 H 0 1 N N N N N N 9.328  26.679 25.040 -5.171 -0.723 1.922  H14 YLS 44 
YLS H15 H15 H 0 1 N N N N N N 11.973 21.736 26.309 -0.278 -0.048 1.435  H15 YLS 45 
YLS H16 H16 H 0 1 N N N N N N 12.849 22.261 29.148 -0.906 -2.492 1.669  H16 YLS 46 
YLS H17 H17 H 0 1 N N N N N N 13.023 20.718 28.245 -0.033 -2.801 0.149  H17 YLS 47 
YLS H18 H18 H 0 1 N N N N N N 14.336 23.317 27.396 2.020  -1.778 1.187  H18 YLS 48 
YLS H19 H19 H 0 1 N N N N N N 15.181 22.670 29.668 0.781  -0.400 2.873  H19 YLS 49 
YLS H20 H20 H 0 1 N N N N N N 15.573 21.032 29.045 0.345  -1.895 3.735  H20 YLS 50 
YLS H21 H21 H 0 1 N N N N N N 16.438 22.468 28.401 2.051  -1.404 3.614  H21 YLS 51 
YLS H22 H22 H 0 1 N N N N N N 15.788 21.783 26.104 1.664  -4.231 1.187  H22 YLS 52 
YLS H23 H23 H 0 1 N N N N N N 14.823 20.386 26.691 2.508  -3.709 2.664  H23 YLS 53 
YLS H24 H24 H 0 1 N N N N N N 14.061 21.625 25.637 0.774  -4.102 2.723  H24 YLS 54 
YLS H25 H25 H 0 1 N N N N N N 4.450  26.687 25.293 -8.183 2.683  -1.053 H25 YLS 55 
YLS H26 H26 H 0 1 N N N N N N 6.694  26.477 24.317 -6.087 2.392  0.207  H26 YLS 56 
YLS H27 H27 H 0 1 N N N N N N 12.057 24.277 27.686 -1.853 -0.751 -0.934 H27 YLS 57 
YLS H28 H28 H 0 1 N N N N N N 10.363 20.100 26.444 2.185  -0.111 0.813  H28 YLS 58 
YLS H29 H29 H 0 1 N N N N N N 4.521  21.770 24.274 5.247  5.038  1.279  H29 YLS 59 
YLS H30 H30 H 0 1 N N N N N N 8.030  17.078 29.248 5.142  0.191  -2.407 H30 YLS 60 
YLS O1  O6  O 0 1 N Y N N N N ?      ?      ?      5.199  -1.423 -0.157 O1  YLS 61 
YLS O2  O7  O 0 1 N Y N N N N ?      ?      ?      3.044  -2.637 -0.170 O2  YLS 62 
YLS O3  O8  O 0 1 N Y N N N N ?      ?      ?      4.664  -2.975 -1.802 O3  YLS 63 
YLS H6  H6  H 0 1 N Y N N N N ?      ?      ?      5.082  -3.724 -1.355 H6  YLS 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YLS O18 C14 DOUB N N 1  
YLS C14 N15 SING N N 2  
YLS C14 C13 SING N N 3  
YLS N15 C16 SING N N 4  
YLS O01 C02 DOUB N N 5  
YLS C30 C29 DOUB Y N 6  
YLS C30 C24 SING Y N 7  
YLS C23 C24 SING N N 8  
YLS C23 O22 SING N N 9  
YLS C29 C27 SING Y N 10 
YLS C13 C12 SING N N 11 
YLS C13 C17 SING N N 12 
YLS C24 C25 DOUB Y N 13 
YLS C02 O22 SING N N 14 
YLS C02 N03 SING N N 15 
YLS C16 C17 SING N N 16 
YLS C08 C06 SING N N 17 
YLS C12 C11 SING N N 18 
YLS N03 C04 SING N N 19 
YLS C27 F28 SING N N 20 
YLS C27 C26 DOUB Y N 21 
YLS N10 C11 SING N N 22 
YLS N10 C09 SING N N 23 
YLS C04 C09 SING N N 24 
YLS C04 C05 SING N N 25 
YLS C25 C26 SING Y N 26 
YLS C06 C05 SING N N 27 
YLS C06 C07 SING N N 28 
YLS C11 C19 SING N N 29 
YLS C09 O21 DOUB N N 30 
YLS C19 O20 SING N N 31 
YLS C11 H1  SING N N 32 
YLS C12 H2  SING N N 33 
YLS C12 H3  SING N N 34 
YLS C13 H4  SING N N 35 
YLS C19 H5  SING N N 36 
YLS C19 S1  SING N N 37 
YLS C17 H7  SING N N 38 
YLS C17 H8  SING N N 39 
YLS C16 H9  SING N N 40 
YLS C16 H10 SING N N 41 
YLS C26 H11 SING N N 42 
YLS C25 H12 SING N N 43 
YLS C23 H13 SING N N 44 
YLS C23 H14 SING N N 45 
YLS C04 H15 SING N N 46 
YLS C05 H16 SING N N 47 
YLS C05 H17 SING N N 48 
YLS C06 H18 SING N N 49 
YLS C07 H19 SING N N 50 
YLS C07 H20 SING N N 51 
YLS C07 H21 SING N N 52 
YLS C08 H22 SING N N 53 
YLS C08 H23 SING N N 54 
YLS C08 H24 SING N N 55 
YLS C29 H25 SING N N 56 
YLS C30 H26 SING N N 57 
YLS N03 H27 SING N N 58 
YLS N10 H28 SING N N 59 
YLS N15 H29 SING N N 60 
YLS O20 H30 SING N N 61 
YLS S1  O1  DOUB N N 62 
YLS S1  O2  DOUB N N 63 
YLS S1  O3  SING N N 64 
YLS O3  H6  SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YLS SMILES           ACDLabs              12.01 "CC(C)CC(NC(=O)OCc1ccc(F)cc1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"                                                                                                                                                                 
YLS InChI            InChI                1.03  "InChI=1S/C21H30FN3O8S/c1-12(2)9-16(25-21(29)33-11-13-3-5-15(22)6-4-13)19(27)24-17(20(28)34(30,31)32)10-14-7-8-23-18(14)26/h3-6,12,14,16-17,20,28H,7-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t14-,16-,17-,20-/m0/s1" 
YLS InChIKey         InChI                1.03  SXLHHGJXSMBQOQ-VERUCKTNSA-N                                                                                                                                                                                                     
YLS SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OCc1ccc(F)cc1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O"                                                                                                                                            
YLS SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OCc1ccc(F)cc1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"                                                                                                                                                   
YLS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)S(=O)(=O)O)NC(=O)OCc2ccc(cc2)F"                                                                                                                                             
YLS SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccc(cc2)F"                                                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YLS "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,2S)-2-[(N-{[(4-fluorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"                                          
YLS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S})-2-[[(2~{S})-2-[(4-fluorophenyl)methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YLS "Create component" 2021-03-12 RCSB 
YLS "Initial release"  2021-03-24 RCSB 
YLS "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YLS 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
