data_YSS
#

_chem_comp.id                                   YSS
_chem_comp.name                                 "15R-methyl-prostaglandin D2"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H34 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(5Z,13E,15R,16E)-9alpha,15-dihydroxy-15-methyl-11-oxo-12alpha-prosta-5,13,16-trien-1-oic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-31
_chem_comp.pdbx_modified_date                   2021-08-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       366.492
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YSS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7M8W
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YSS  C10  C1   C  0  1  N  N  N   -6.791  -58.022  540.768  -0.210  -4.673  -0.493  C10  YSS   1  
YSS  C13  C2   C  0  1  N  N  N   -7.842  -56.243  543.887  -1.648  -1.860   0.173  C13  YSS   2  
YSS  C15  C3   C  0  1  N  N  R   -8.502  -54.452  545.459  -3.427  -0.222   0.511  C15  YSS   3  
YSS  C17  C4   C  0  1  N  N  N   -7.899  -54.451  548.059  -4.552   1.934  -0.059  C17  YSS   4  
YSS  C20  C5   C  0  1  N  N  N   -5.131  -55.063  549.534  -5.455   5.571  -0.945  C20  YSS   5  
YSS  C21  C6   C  0  1  N  N  N   -9.455  -53.278  545.227  -4.404  -0.352   1.681  C21  YSS   6  
YSS  C01  C7   C  0  1  N  N  N   -2.084  -58.713  547.656   5.353   3.484   0.721  C01  YSS   7  
YSS  C02  C8   C  0  1  N  N  N   -3.566  -59.190  547.592   4.055   2.780   0.422  C02  YSS   8  
YSS  C03  C9   C  0  1  N  N  N   -4.509  -58.303  546.761   4.320   1.591  -0.504  C03  YSS   9  
YSS  C04  C10  C  0  1  N  N  N   -5.954  -58.873  546.573   3.002   0.877  -0.808  C04  YSS  10  
YSS  C05  C11  C  0  1  N  N  N   -6.120  -60.183  545.879   3.264  -0.294  -1.719  C05  YSS  11  
YSS  C06  C12  C  0  1  N  N  N   -6.891  -60.594  544.814   2.825  -1.486  -1.398  C06  YSS  12  
YSS  C07  C13  C  0  1  N  N  N   -7.779  -59.576  544.184   1.916  -1.658  -0.208  C07  YSS  13  
YSS  C08  C14  C  0  1  N  N  R   -7.018  -58.636  543.186   0.649  -2.401  -0.638  C08  YSS  14  
YSS  C09  C15  C  0  1  N  N  S   -6.789  -59.240  541.747   0.992  -3.855  -1.029  C09  YSS  15  
YSS  C11  C16  C  0  1  N  N  N   -7.179  -56.895  541.602  -0.536  -3.977   0.824  C11  YSS  16  
YSS  C12  C17  C  0  1  N  N  R   -7.737  -57.331  542.887  -0.334  -2.499   0.542  C12  YSS  17  
YSS  C14  C18  C  0  1  N  N  N   -8.860  -55.437  544.321  -2.113  -0.861   0.880  C14  YSS  18  
YSS  C16  C19  C  0  1  N  N  N   -8.627  -55.120  546.864  -3.204   1.258   0.194  C16  YSS  19  
YSS  C18  C20  C  0  1  N  N  N   -7.718  -55.334  549.331  -4.329   3.414  -0.375  C18  YSS  20  
YSS  C19  C21  C  0  1  N  N  N   -6.342  -56.018  549.495  -5.678   4.091  -0.629  C19  YSS  21  
YSS  O1   O1   O  0  1  N  N  N   -1.163  -59.571  547.817   5.363   4.563   1.519  O1   YSS  22  
YSS  O2   O2   O  0  1  N  N  N   -1.843  -57.481  547.540   6.385   3.077   0.242  O2   YSS  23  
YSS  O3   O3   O  0  1  N  N  N   -7.855  -60.106  541.448   2.204  -4.272  -0.397  O3   YSS  24  
YSS  O4   O4   O  0  1  N  N  N   -7.054  -55.679  541.253  -0.880  -4.490   1.862  O4   YSS  25  
YSS  O5   O5   O  0  1  N  N  N   -7.147  -54.047  545.239  -3.969  -0.878  -0.637  O5   YSS  26  
YSS  H1   H1   H  0  1  N  N  N   -7.517  -58.175  539.956  -1.054  -4.613  -1.181  H1   YSS  27  
YSS  H2   H2   H  0  1  N  N  N   -5.790  -57.864  540.340   0.076  -5.710  -0.321  H2   YSS  28  
YSS  H3   H3   H  0  1  N  N  N   -6.906  -56.040  544.385  -2.207  -2.227  -0.676  H3   YSS  29  
YSS  H4   H4   H  0  1  N  N  N   -6.899  -54.146  547.716  -5.047   1.453  -0.903  H4   YSS  30  
YSS  H5   H5   H  0  1  N  N  N   -4.206  -55.647  549.653  -4.830   5.663  -1.833  H5   YSS  31  
YSS  H6   H6   H  0  1  N  N  N   -5.085  -54.491  548.596  -6.416   6.053  -1.126  H6   YSS  32  
YSS  H7   H7   H  0  1  N  N  N   -5.238  -54.370  550.381  -4.960   6.052  -0.101  H7   YSS  33  
YSS  H8   H8   H  0  1  N  N  N   -9.282  -52.508  545.993  -5.354   0.109   1.413  H8   YSS  34  
YSS  H9   H9   H  0  1  N  N  N   -9.274  -52.850  544.230  -4.563  -1.407   1.906  H9   YSS  35  
YSS  H10  H10  H  0  1  N  N  N  -10.495  -53.632  545.291  -3.991   0.148   2.556  H10  YSS  36  
YSS  H11  H11  H  0  1  N  N  N   -3.955  -59.229  548.620   3.612   2.424   1.352  H11  YSS  37  
YSS  H12  H12  H  0  1  N  N  N   -3.579  -60.200  547.157   3.369   3.474  -0.065  H12  YSS  38  
YSS  H13  H13  H  0  1  N  N  N   -4.062  -58.169  545.765   4.763   1.947  -1.434  H13  YSS  39  
YSS  H14  H14  H  0  1  N  N  N   -4.589  -57.327  547.261   5.006   0.898  -0.017  H14  YSS  40  
YSS  H15  H15  H  0  1  N  N  N   -6.525  -58.128  546.000   2.559   0.521   0.123  H15  YSS  41  
YSS  H16  H16  H  0  1  N  N  N   -6.394  -58.979  547.576   2.316   1.570  -1.294  H16  YSS  42  
YSS  H17  H17  H  0  1  N  N  N   -5.511  -60.971  546.297   3.813  -0.151  -2.638  H17  YSS  43  
YSS  H18  H18  H  0  1  N  N  N   -6.854  -61.610  544.451   3.114  -2.345  -1.985  H18  YSS  44  
YSS  H19  H19  H  0  1  N  N  N   -8.223  -58.958  544.978   2.430  -2.233   0.562  H19  YSS  45  
YSS  H20  H20  H  0  1  N  N  N   -8.577  -60.098  543.635   1.646  -0.679   0.188  H20  YSS  46  
YSS  H21  H21  H  0  1  N  N  N   -6.033  -58.405  543.618   0.180  -1.888  -1.477  H21  YSS  47  
YSS  H22  H22  H  0  1  N  N  N   -5.815  -59.750  541.709   1.070  -3.953  -2.111  H22  YSS  48  
YSS  H23  H23  H  0  1  N  N  N   -8.775  -57.625  542.670   0.086  -2.007   1.419  H23  YSS  49  
YSS  H24  H24  H  0  1  N  N  N   -9.851  -55.486  543.895  -1.554  -0.494   1.729  H24  YSS  50  
YSS  H25  H25  H  0  1  N  N  N   -9.698  -55.158  547.114  -2.709   1.739   1.038  H25  YSS  51  
YSS  H26  H26  H  0  1  N  N  N   -7.882  -54.694  550.210  -3.834   3.896   0.468  H26  YSS  52  
YSS  H27  H27  H  0  1  N  N  N   -8.484  -56.123  549.304  -3.704   3.506  -1.264  H27  YSS  53  
YSS  H28  H28  H  0  1  N  N  N   -6.356  -56.588  550.436  -6.303   3.999   0.259  H28  YSS  54  
YSS  H29  H29  H  0  1  N  N  N   -6.203  -56.709  548.650  -6.173   3.610  -1.473  H29  YSS  55  
YSS  H30  H30  H  0  1  N  N  N   -0.320  -59.133  547.831   6.220   4.981   1.681  H30  YSS  56  
YSS  H31  H31  H  0  1  N  N  N   -7.844  -60.842  542.049   2.432  -5.198  -0.556  H31  YSS  57  
YSS  H32  H32  H  0  1  N  N  N   -6.884  -53.438  545.919  -3.401  -0.836  -1.419  H32  YSS  58  
YSS  H33  H33  H  0  1  N  N  N   -8.475  -53.560  548.348  -5.177   1.843   0.829  H33  YSS  59  
YSS  H34  H34  H  0  1  N  N  N   -8.235  -56.144  546.775  -2.579   1.349  -0.694  H34  YSS  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YSS  C10  C11  SING  N  N   1  
YSS  C10  C09  SING  N  N   2  
YSS  O4   C11  DOUB  N  N   3  
YSS  O3   C09  SING  N  N   4  
YSS  C11  C12  SING  N  N   5  
YSS  C09  C08  SING  N  N   6  
YSS  C12  C08  SING  N  N   7  
YSS  C12  C13  SING  N  N   8  
YSS  C08  C07  SING  N  N   9  
YSS  C13  C14  DOUB  N  E  10  
YSS  C07  C06  SING  N  N  11  
YSS  C14  C15  SING  N  N  12  
YSS  C06  C05  DOUB  N  Z  13  
YSS  C21  C15  SING  N  N  14  
YSS  O5   C15  SING  N  N  15  
YSS  C15  C16  SING  N  N  16  
YSS  C05  C04  SING  N  N  17  
YSS  C04  C03  SING  N  N  18  
YSS  C03  C02  SING  N  N  19  
YSS  C16  C17  SING  N  N  20  
YSS  O2   C01  DOUB  N  N  21  
YSS  C02  C01  SING  N  N  22  
YSS  C01  O1   SING  N  N  23  
YSS  C17  C18  SING  N  N  24  
YSS  C18  C19  SING  N  N  25  
YSS  C19  C20  SING  N  N  26  
YSS  C10  H1   SING  N  N  27  
YSS  C10  H2   SING  N  N  28  
YSS  C13  H3   SING  N  N  29  
YSS  C17  H4   SING  N  N  30  
YSS  C20  H5   SING  N  N  31  
YSS  C20  H6   SING  N  N  32  
YSS  C20  H7   SING  N  N  33  
YSS  C21  H8   SING  N  N  34  
YSS  C21  H9   SING  N  N  35  
YSS  C21  H10  SING  N  N  36  
YSS  C02  H11  SING  N  N  37  
YSS  C02  H12  SING  N  N  38  
YSS  C03  H13  SING  N  N  39  
YSS  C03  H14  SING  N  N  40  
YSS  C04  H15  SING  N  N  41  
YSS  C04  H16  SING  N  N  42  
YSS  C05  H17  SING  N  N  43  
YSS  C06  H18  SING  N  N  44  
YSS  C07  H19  SING  N  N  45  
YSS  C07  H20  SING  N  N  46  
YSS  C08  H21  SING  N  N  47  
YSS  C09  H22  SING  N  N  48  
YSS  C12  H23  SING  N  N  49  
YSS  C14  H24  SING  N  N  50  
YSS  C16  H25  SING  N  N  51  
YSS  C18  H26  SING  N  N  52  
YSS  C18  H27  SING  N  N  53  
YSS  C19  H28  SING  N  N  54  
YSS  C19  H29  SING  N  N  55  
YSS  O1   H30  SING  N  N  56  
YSS  O3   H31  SING  N  N  57  
YSS  O5   H32  SING  N  N  58  
YSS  C17  H33  SING  N  N  59  
YSS  C16  H34  SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YSS  SMILES            ACDLabs               12.01  "OC1CC(=O)C(/C=C/C(C)(O)CCCCC)C1C\C=C/CCCC(=O)O"  
YSS  InChI             InChI                 1.03   "InChI=1S/C21H34O5/c1-3-4-9-13-21(2,26)14-12-17-16(18(22)15-19(17)23)10-7-5-6-8-11-20(24)25/h5,7,12,14,16-18,22,26H,3-4,6,8-11,13,15H2,1-2H3,(H,24,25)/b7-5-,14-12+/t16-,17-,18+,21-/m1/s1"  
YSS  InChIKey          InChI                 1.03   CTXLUMAOXBULOZ-BKVRKCTKSA-N  
YSS  SMILES_CANONICAL  CACTVS                3.385  "CCCCC[C@@](C)(O)/C=C/[C@@H]1[C@@H](C\C=C/CCCC(O)=O)[C@@H](O)CC1=O"  
YSS  SMILES            CACTVS                3.385  "CCCCC[C](C)(O)C=C[CH]1[CH](CC=CCCCC(O)=O)[CH](O)CC1=O"  
YSS  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCC[C@](C)(/C=C/[C@@H]1[C@H]([C@H](CC1=O)O)C/C=C\CCCC(=O)O)O"  
YSS  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCC(C)(C=CC1C(C(CC1=O)O)CC=CCCCC(=O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YSS  "SYSTEMATIC NAME"  ACDLabs               12.01  "(5Z,13E,15R)-9alpha,15-dihydroxy-15-methyl-11-oxo-12alpha-prosta-5,13-dien-1-oic acid"  
YSS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(~{Z})-7-[(1~{R},2~{R},5~{S})-2-[(~{E},3~{R})-3-methyl-3-oxidanyl-oct-1-enyl]-5-oxidanyl-3-oxidanylidene-cyclopentyl]hept-5-enoic acid"  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     YSS
_pdbx_chem_comp_synonyms.name        "(5Z,13E,15R,16E)-9alpha,15-dihydroxy-15-methyl-11-oxo-12alpha-prosta-5,13,16-trien-1-oic acid"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YSS  "Create component"  2021-03-31  RCSB  
YSS  "Initial release"   2021-08-25  RCSB  
##
