data_3VT
# 
_chem_comp.id                                    3VT 
_chem_comp.name                                  "[(3R)-1-hydroxy-4,5-dimethyl-6-(pyrazin-2-yloxy)-1,3-dihydro-2,1-benzoxaborol-3-yl]acetic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H15 B N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-11-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        314.101 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3VT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4WYY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3VT C1  C1  C 0 1 Y N N N N N -6.600  -12.265 19.221 0.658  1.354  -0.723 C1  3VT 1  
3VT C2  C2  C 0 1 Y N N N N N -6.484  -13.589 19.572 1.454  0.260  -1.023 C2  3VT 2  
3VT C3  C3  C 0 1 Y N N N N N -5.240  -14.207 19.665 0.881  -0.998 -1.158 C3  3VT 3  
3VT O4  O1  O 0 1 N N N N N N -5.597  -10.012 16.921 -1.761 3.576  0.004  O4  3VT 4  
3VT C7  C4  C 0 1 N N N N N N -2.614  -11.513 17.102 -3.171 -0.813 0.763  C7  3VT 5  
3VT C8  C5  C 0 1 N N N N N N -1.730  -10.409 16.561 -4.670 -0.781 0.913  C8  3VT 6  
3VT C9  C6  C 0 1 N N N N N N -2.711  -14.136 19.446 -1.094 -2.535 -1.135 C9  3VT 7  
3VT C10 C7  C 0 1 N N N N N N -5.128  -15.634 20.139 1.748  -2.186 -1.485 C10 3VT 8  
3VT C11 C8  C 0 1 Y N N N N N -8.553  -14.592 18.855 3.596  0.198  -0.115 C11 3VT 9  
3VT C12 C9  C 0 1 Y N N N N N -8.232  -14.261 17.513 4.979  0.243  -0.259 C12 3VT 10 
3VT C13 C10 C 0 1 Y N N N N N -10.209 -15.176 16.844 5.224  -0.239 1.965  C13 3VT 11 
3VT C14 C11 C 0 1 Y N N N N N -10.504 -15.509 18.157 3.850  -0.279 2.112  C14 3VT 12 
3VT O1  O2  O 0 1 N N N N N N -0.898  -9.842  17.214 -5.260 -1.469 1.903  O1  3VT 13 
3VT O2  O3  O 0 1 N N N N N N -1.920  -10.127 15.338 -5.341 -0.137 0.142  O2  3VT 14 
3VT C6  C12 C 0 1 N N R N N N -3.129  -11.190 18.508 -2.760 0.047  -0.433 C6  3VT 15 
3VT O   O4  O 0 1 N N N N N N -3.746  -9.918  18.538 -3.076 1.413  -0.169 O   3VT 16 
3VT B   B1  B 0 1 N N N N N N -5.201  -10.086 18.335 -1.879 2.177  -0.214 B   3VT 17 
3VT C5  C13 C 0 1 Y N N N N N -4.206  -12.136 18.980 -1.281 -0.083 -0.683 C5  3VT 18 
3VT C   C14 C 0 1 Y N N N N N -5.459  -11.524 18.931 -0.711 1.183  -0.552 C   3VT 19 
3VT C4  C15 C 0 1 Y N N N N N -4.077  -13.483 19.357 -0.482 -1.165 -0.993 C4  3VT 20 
3VT O3  O5  O 0 1 N N N N N N -7.657  -14.318 19.853 2.794  0.418  -1.187 O3  3VT 21 
3VT N1  N1  N 0 1 Y N N N N N -9.680  -15.205 19.178 3.065  -0.065 1.070  N1  3VT 22 
3VT N   N2  N 0 1 Y N N N N N -9.073  -14.558 16.511 5.757  0.024  0.784  N   3VT 23 
3VT H1  H1  H 0 1 N N N N N N -7.574  -11.801 19.171 1.100  2.334  -0.617 H1  3VT 24 
3VT H2  H2  H 0 1 N N N N N N -4.827  -9.866  16.383 -2.599 4.015  0.200  H2  3VT 25 
3VT H3  H3  H 0 1 N N N N N N -3.474  -11.643 16.429 -2.707 -0.421 1.668  H3  3VT 26 
3VT H4  H4  H 0 1 N N N N N N -2.034  -12.447 17.141 -2.843 -1.840 0.602  H4  3VT 27 
3VT H5  H5  H 0 1 N N N N N N -2.306  -14.003 20.460 -1.300 -2.733 -2.187 H5  3VT 28 
3VT H6  H6  H 0 1 N N N N N N -2.803  -15.210 19.226 -0.400 -3.284 -0.753 H6  3VT 29 
3VT H7  H7  H 0 1 N N N N N N -2.033  -13.669 18.716 -2.024 -2.578 -0.568 H7  3VT 30 
3VT H8  H8  H 0 1 N N N N N N -5.028  -15.650 21.234 2.099  -2.645 -0.560 H8  3VT 31 
3VT H9  H9  H 0 1 N N N N N N -6.031  -16.190 19.845 1.168  -2.913 -2.053 H9  3VT 32 
3VT H10 H10 H 0 1 N N N N N N -4.244  -16.103 19.683 2.603  -1.860 -2.076 H10 3VT 33 
3VT H11 H11 H 0 1 N N N N N N -7.298  -13.763 17.295 5.416  0.457  -1.224 H11 3VT 34 
3VT H12 H12 H 0 1 N N N N N N -10.918 -15.424 16.068 5.862  -0.414 2.818  H12 3VT 35 
3VT H13 H13 H 0 1 N N N N N N -11.426 -16.030 18.368 3.417  -0.486 3.080  H13 3VT 36 
3VT H14 H14 H 0 1 N N N N N N -0.454  -9.199  16.673 -6.224 -1.418 1.959  H14 3VT 37 
3VT H15 H15 H 0 1 N N N N N N -2.285  -11.225 19.212 -3.296 -0.285 -1.322 H15 3VT 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3VT O2  C8  DOUB N N 1  
3VT N   C13 DOUB Y N 2  
3VT N   C12 SING Y N 3  
3VT C8  C7  SING N N 4  
3VT C8  O1  SING N N 5  
3VT C13 C14 SING Y N 6  
3VT O4  B   SING N N 7  
3VT C7  C6  SING N N 8  
3VT C12 C11 DOUB Y N 9  
3VT C14 N1  DOUB Y N 10 
3VT B   O   SING N N 11 
3VT B   C   SING N N 12 
3VT C6  O   SING N N 13 
3VT C6  C5  SING N N 14 
3VT C11 N1  SING Y N 15 
3VT C11 O3  SING N N 16 
3VT C   C5  DOUB Y N 17 
3VT C   C1  SING Y N 18 
3VT C5  C4  SING Y N 19 
3VT C1  C2  DOUB Y N 20 
3VT C4  C9  SING N N 21 
3VT C4  C3  DOUB Y N 22 
3VT C2  C3  SING Y N 23 
3VT C2  O3  SING N N 24 
3VT C3  C10 SING N N 25 
3VT C1  H1  SING N N 26 
3VT O4  H2  SING N N 27 
3VT C7  H3  SING N N 28 
3VT C7  H4  SING N N 29 
3VT C9  H5  SING N N 30 
3VT C9  H6  SING N N 31 
3VT C9  H7  SING N N 32 
3VT C10 H8  SING N N 33 
3VT C10 H9  SING N N 34 
3VT C10 H10 SING N N 35 
3VT C12 H11 SING N N 36 
3VT C13 H12 SING N N 37 
3VT C14 H13 SING N N 38 
3VT O1  H14 SING N N 39 
3VT C6  H15 SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3VT SMILES           ACDLabs              12.01 "O=C(O)CC3OB(O)c2cc(Oc1nccnc1)c(c(c23)C)C"                                                                                               
3VT InChI            InChI                1.03  "InChI=1S/C15H15BN2O5/c1-8-9(2)15-10(16(21)23-12(15)6-14(19)20)5-11(8)22-13-7-17-3-4-18-13/h3-5,7,12,21H,6H2,1-2H3,(H,19,20)/t12-/m1/s1" 
3VT InChIKey         InChI                1.03  MTHDAYXINWUJNY-GFCCVEGCSA-N                                                                                                              
3VT SMILES_CANONICAL CACTVS               3.385 "Cc1c(C)c2[C@@H](CC(O)=O)OB(O)c2cc1Oc3cnccn3"                                                                                            
3VT SMILES           CACTVS               3.385 "Cc1c(C)c2[CH](CC(O)=O)OB(O)c2cc1Oc3cnccn3"                                                                                              
3VT SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "B1(c2cc(c(c(c2[C@H](O1)CC(=O)O)C)C)Oc3cnccn3)O"                                                                                         
3VT SMILES           "OpenEye OEToolkits" 1.9.2 "B1(c2cc(c(c(c2C(O1)CC(=O)O)C)C)Oc3cnccn3)O"                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3VT "SYSTEMATIC NAME" ACDLabs              12.01 "[(3R)-1-hydroxy-4,5-dimethyl-6-(pyrazin-2-yloxy)-1,3-dihydro-2,1-benzoxaborol-3-yl]acetic acid" 
3VT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[(3R)-4,5-dimethyl-1-oxidanyl-6-pyrazin-2-yloxy-3H-2,1-benzoxaborol-3-yl]ethanoic acid"       
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3VT "Create component" 2014-11-19 RCSB 
3VT "Initial release"  2015-08-05 RCSB 
3VT "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            3VT 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
