data_4RT
# 
_chem_comp.id                                    4RT 
_chem_comp.name                                  "(1R,2S,5R)-8'-(3-chloro-4-fluorobenzyl)-6'-hydroxy-1-(hydroxymethyl)-2'-methyl-9',10'-dihydro-2'H-spiro[bicyclo[3.1.0]hexane-2,3'-imidazo[5,1-a][2,6]naphthyridine]-1',5',7'(8'H)-trione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H23 Cl F N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-05-15 
_chem_comp.pdbx_modified_date                    2015-10-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        487.908 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4RT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4ZTJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4RT N1  N1  N  0 1 N N N 28.764 -36.562 19.850 -2.699 -0.108 -0.540 N1  4RT 1  
4RT C4  C1  C  0 1 N N N 31.564 -36.660 22.487 -0.117 2.618  -0.244 C4  4RT 2  
4RT C5  C2  C  0 1 N N N 29.486 -36.687 21.037 -2.085 1.091  -0.250 C5  4RT 3  
4RT C6  C3  C  0 1 N N N 29.443 -36.353 18.652 -2.023 -1.114 -1.128 C6  4RT 4  
4RT C7  C4  C  0 1 N N N 30.890 -36.279 18.754 -0.594 -0.946 -1.435 C7  4RT 5  
4RT C8  C5  C  0 1 N N S 27.289 -36.621 20.064 -4.088 0.010  -0.102 C8  4RT 6  
4RT C10 C6  C  0 1 N N N 26.167 -37.658 22.183 -5.508 1.896  1.002  C10 4RT 7  
4RT C13 C7  C  0 1 N N R 25.774 -36.702 18.132 -5.881 -1.509 0.637  C13 4RT 8  
4RT C15 C8  C  0 1 N N N 27.023 -38.846 18.599 -3.351 -2.100 1.260  C15 4RT 9  
4RT C17 C9  C  0 1 N N N 35.112 -36.174 21.372 3.413  1.908  -1.205 C17 4RT 10 
4RT C20 C10 C  0 1 Y N N 36.815 -39.184 22.964 5.691  1.198  1.720  C20 4RT 11 
4RT C21 C11 C  0 1 Y N N 37.302 -39.823 21.846 6.154  -0.069 1.410  C21 4RT 12 
4RT C22 C12 C  0 1 Y N N 37.115 -39.301 20.587 5.729  -0.695 0.249  C22 4RT 13 
4RT F   F1  F  0 1 N N N 37.964 -41.000 21.983 7.019  -0.694 2.238  F   4RT 14 
4RT C19 C13 C  0 1 Y N N 36.110 -38.000 22.805 4.801  1.835  0.875  C19 4RT 15 
4RT CL  CL1 CL 0 0 N N N 37.694 -40.159 19.202 6.307  -2.285 -0.141 CL  4RT 16 
4RT C23 C14 C  0 1 Y N N 36.428 -38.110 20.430 4.843  -0.054 -0.597 C23 4RT 17 
4RT C18 C15 C  0 1 Y N N 35.903 -37.449 21.541 4.378  1.209  -0.282 C18 4RT 18 
4RT N   N2  N  0 1 N N N 33.672 -36.403 21.210 2.040  1.573  -0.820 N   4RT 19 
4RT C1  C16 C  0 1 N N N 33.109 -36.280 19.983 1.442  0.497  -1.369 C1  4RT 20 
4RT O4  O1  O  0 1 N N N 33.771 -36.081 18.968 2.076  -0.267 -2.070 O4  4RT 21 
4RT C2  C17 C  0 1 N N N 31.651 -36.394 19.958 0.007  0.257  -1.107 C2  4RT 22 
4RT O   O2  O  0 1 N N N 31.496 -36.080 17.565 0.114  -1.940 -2.020 O   4RT 23 
4RT O1  O3  O  0 1 N N N 28.864 -36.227 17.575 -2.591 -2.156 -1.404 O1  4RT 24 
4RT C14 C18 C  0 1 N N R 26.427 -37.564 19.147 -4.434 -1.071 0.932  C14 4RT 25 
4RT O3  O4  O  0 1 N N N 27.646 -39.501 19.695 -3.660 -2.739 2.501  O3  4RT 26 
4RT C16 C19 C  0 1 N N N 24.948 -37.482 19.152 -5.546 -0.789 1.945  C16 4RT 27 
4RT C12 C20 C  0 1 N N N 26.090 -35.228 18.439 -6.362 -0.660 -0.559 C12 4RT 28 
4RT C11 C21 C  0 1 N N N 26.615 -35.246 19.886 -5.055 -0.236 -1.276 C11 4RT 29 
4RT N2  N3  N  0 1 N N N 27.314 -37.066 21.490 -4.267 1.347  0.451  N2  4RT 30 
4RT C9  C22 C  0 1 N N N 28.500 -36.840 22.094 -3.085 1.989  0.364  C9  4RT 31 
4RT O2  O5  O  0 1 N N N 28.631 -36.780 23.315 -2.874 3.128  0.733  O2  4RT 32 
4RT C3  C23 C  0 1 N N N 30.871 -36.612 21.149 -0.767 1.288  -0.530 C3  4RT 33 
4RT C   C24 C  0 1 N N N 33.002 -37.104 22.314 1.343  2.411  0.153  C   4RT 34 
4RT H1  H1  H  0 1 N N N 31.545 -35.659 22.943 -0.164 3.243  -1.136 H1  4RT 35 
4RT H2  H2  H  0 1 N N N 31.040 -37.371 23.143 -0.645 3.111  0.571  H2  4RT 36 
4RT H3  H3  H  0 1 N N N 26.447 -37.896 23.220 -6.319 1.182  0.851  H3  4RT 37 
4RT H4  H4  H  0 1 N N N 25.331 -36.943 22.185 -5.381 2.082  2.068  H4  4RT 38 
4RT H5  H5  H  0 1 N N N 25.861 -38.579 21.665 -5.749 2.830  0.495  H5  4RT 39 
4RT H6  H6  H  0 1 N N N 25.753 -37.024 17.080 -6.171 -2.559 0.656  H6  4RT 40 
4RT H7  H7  H  0 1 N N N 26.232 -39.482 18.176 -3.308 -2.847 0.468  H7  4RT 41 
4RT H8  H8  H  0 1 N N N 27.766 -38.618 17.821 -2.386 -1.599 1.340  H8  4RT 42 
4RT H9  H9  H  0 1 N N N 35.484 -35.647 20.481 3.557  2.986  -1.134 H9  4RT 43 
4RT H10 H10 H  0 1 N N N 35.268 -35.546 22.261 3.592  1.584  -2.231 H10 4RT 44 
4RT H11 H11 H  0 1 N N N 36.979 -39.598 23.948 6.021  1.688  2.625  H11 4RT 45 
4RT H12 H12 H  0 1 N N N 35.715 -37.496 23.675 4.437  2.822  1.120  H12 4RT 46 
4RT H13 H13 H  0 1 N N N 36.298 -37.690 19.443 4.512  -0.541 -1.502 H13 4RT 47 
4RT H14 H14 H  0 1 N N N 30.840 -36.021 16.881 -0.404 -2.735 -2.205 H14 4RT 48 
4RT H15 H15 H  0 1 N N N 28.036 -40.315 19.398 -3.014 -3.405 2.772  H15 4RT 49 
4RT H16 H16 H  0 1 N N N 24.427 -36.952 19.963 -5.880 0.244  2.049  H16 4RT 50 
4RT H17 H17 H  0 1 N N N 24.346 -38.345 18.832 -5.554 -1.380 2.860  H17 4RT 51 
4RT H18 H18 H  0 1 N N N 26.857 -34.842 17.751 -6.985 -1.257 -1.224 H18 4RT 52 
4RT H19 H19 H  0 1 N N N 25.183 -34.610 18.361 -6.907 0.217  -0.209 H19 4RT 53 
4RT H20 H20 H  0 1 N N N 27.345 -34.438 20.040 -5.208 0.679  -1.849 H20 4RT 54 
4RT H21 H21 H  0 1 N N N 25.784 -35.130 20.598 -4.688 -1.038 -1.918 H21 4RT 55 
4RT H22 H22 H  0 1 N N N 33.016 -38.184 22.108 1.839  3.380  0.209  H22 4RT 56 
4RT H23 H23 H  0 1 N N N 33.550 -36.901 23.246 1.383  1.932  1.131  H23 4RT 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4RT O   C7  SING N N 1  
4RT O1  C6  DOUB N N 2  
4RT C13 C12 SING N N 3  
4RT C13 C14 SING N N 4  
4RT C13 C16 SING N N 5  
4RT C12 C11 SING N N 6  
4RT C15 C14 SING N N 7  
4RT C15 O3  SING N N 8  
4RT C6  C7  SING N N 9  
4RT C6  N1  SING N N 10 
4RT C7  C2  DOUB N N 11 
4RT O4  C1  DOUB N N 12 
4RT C14 C16 SING N N 13 
4RT C14 C8  SING N N 14 
4RT CL  C22 SING N N 15 
4RT N1  C8  SING N N 16 
4RT N1  C5  SING N N 17 
4RT C11 C8  SING N N 18 
4RT C2  C1  SING N N 19 
4RT C2  C3  SING N N 20 
4RT C1  N   SING N N 21 
4RT C8  N2  SING N N 22 
4RT C23 C22 DOUB Y N 23 
4RT C23 C18 SING Y N 24 
4RT C22 C21 SING Y N 25 
4RT C5  C3  DOUB N N 26 
4RT C5  C9  SING N N 27 
4RT C3  C4  SING N N 28 
4RT N   C17 SING N N 29 
4RT N   C   SING N N 30 
4RT C17 C18 SING N N 31 
4RT N2  C9  SING N N 32 
4RT N2  C10 SING N N 33 
4RT C18 C19 DOUB Y N 34 
4RT C21 F   SING N N 35 
4RT C21 C20 DOUB Y N 36 
4RT C9  O2  DOUB N N 37 
4RT C   C4  SING N N 38 
4RT C19 C20 SING Y N 39 
4RT C4  H1  SING N N 40 
4RT C4  H2  SING N N 41 
4RT C10 H3  SING N N 42 
4RT C10 H4  SING N N 43 
4RT C10 H5  SING N N 44 
4RT C13 H6  SING N N 45 
4RT C15 H7  SING N N 46 
4RT C15 H8  SING N N 47 
4RT C17 H9  SING N N 48 
4RT C17 H10 SING N N 49 
4RT C20 H11 SING N N 50 
4RT C19 H12 SING N N 51 
4RT C23 H13 SING N N 52 
4RT O   H14 SING N N 53 
4RT O3  H15 SING N N 54 
4RT C16 H16 SING N N 55 
4RT C16 H17 SING N N 56 
4RT C12 H18 SING N N 57 
4RT C12 H19 SING N N 58 
4RT C11 H20 SING N N 59 
4RT C11 H21 SING N N 60 
4RT C   H22 SING N N 61 
4RT C   H23 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4RT SMILES           ACDLabs              12.01 "N13C5(N(C)C(C1=C4CCN(Cc2ccc(F)c(Cl)c2)C(=O)C4=C(C3=O)O)=O)C6(C(CC5)C6)CO"                                                                                                                  
4RT InChI            InChI                1.03  "InChI=1S/C24H23ClFN3O5/c1-27-21(33)18-14-5-7-28(10-12-2-3-16(26)15(25)8-12)20(32)17(14)19(31)22(34)29(18)24(27)6-4-13-9-23(13,24)11-30/h2-3,8,13,30-31H,4-7,9-11H2,1H3/t13-,23-,24+/m1/s1" 
4RT InChIKey         InChI                1.03  CMKPKOVJKYIZNW-DHTHFVMWSA-N                                                                                                                                                                 
4RT SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)C2=C3CCN(Cc4ccc(F)c(Cl)c4)C(=O)C3=C(O)C(=O)N2[C@]15CC[C@@H]6C[C@]56CO"                                                                                                             
4RT SMILES           CACTVS               3.385 "CN1C(=O)C2=C3CCN(Cc4ccc(F)c(Cl)c4)C(=O)C3=C(O)C(=O)N2[C]15CC[CH]6C[C]56CO"                                                                                                                 
4RT SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CN1C(=O)C2=C3CCN(C(=O)C3=C(C(=O)N2[C@]14CC[C@H]5[C@@]4(C5)CO)O)Cc6ccc(c(c6)Cl)F"                                                                                                           
4RT SMILES           "OpenEye OEToolkits" 1.9.2 "CN1C(=O)C2=C3CCN(C(=O)C3=C(C(=O)N2C14CCC5C4(C5)CO)O)Cc6ccc(c(c6)Cl)F"                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4RT "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,5R)-8'-(3-chloro-4-fluorobenzyl)-6'-hydroxy-1-(hydroxymethyl)-2'-methyl-9',10'-dihydro-2'H-spiro[bicyclo[3.1.0]hexane-2,3'-imidazo[5,1-a][2,6]naphthyridine]-1',5',7'(8'H)-trione"  
4RT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(1'R,3S,5'R)-8-[(3-chloranyl-4-fluoranyl-phenyl)methyl]-1'-(hydroxymethyl)-2-methyl-6-oxidanyl-spiro[9,10-dihydroimidazo[5,1-a][2,6]naphthyridine-3,2'-bicyclo[3.1.0]hexane]-1,5,7-trione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4RT "Create component" 2015-05-15 RCSB 
4RT "Initial release"  2015-10-07 RCSB 
# 
