data_8VT
# 
_chem_comp.id                                    8VT 
_chem_comp.name                                  
"~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-2-acetamido-6-(hydroxymethyl)-5-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-4-[(3-methoxyphenyl)methoxy]-3,5-bis(oxidanyl)oxan-2-yl]oxy-4-oxidanyl-oxan-3-yl]-3-methoxy-benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H40 N2 O13" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-03-13 
_chem_comp.pdbx_modified_date                    2017-06-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        636.644 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8VT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5NFB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8VT O35 O1  O 0 1 N N N 27.053 -12.693 -2.249 -4.682  -3.944 -0.803 O35 8VT 1  
8VT C33 C1  C 0 1 N N N 27.558 -11.594 -1.970 -5.100  -3.371 0.181  C33 8VT 2  
8VT C34 C2  C 0 1 N N N 28.957 -11.220 -2.370 -6.379  -3.828 0.833  C34 8VT 3  
8VT N1  N1  N 0 1 N N N 26.814 -10.567 -1.334 -4.417  -2.329 0.694  N1  8VT 4  
8VT C1, C3  C 0 1 N N R 25.379 -10.819 -1.164 -3.170  -1.888 0.064  C1, 8VT 5  
8VT C2, C4  C 0 1 N N R 24.928 -9.991  0.080  -3.053  -0.366 0.175  C2, 8VT 6  
8VT N2  N2  N 0 1 N N N 25.429 -10.701 1.296  -4.157  0.265  -0.553 N2  8VT 7  
8VT C36 C5  C 0 1 N N N 26.556 -10.238 1.889  -5.348  0.443  0.052  C36 8VT 8  
8VT C38 C6  C 0 1 Y N N 26.872 -10.846 3.202  -6.463  1.079  -0.682 C38 8VT 9  
8VT C39 C7  C 0 1 Y N N 26.391 -12.111 3.686  -6.284  1.496  -2.002 C39 8VT 10 
8VT C40 C8  C 0 1 Y N N 26.753 -12.514 4.997  -7.327  2.089  -2.684 C40 8VT 11 
8VT C41 C9  C 0 1 Y N N 27.518 -11.619 5.783  -8.549  2.273  -2.064 C41 8VT 12 
8VT C42 C10 C 0 1 Y N N 27.974 -10.376 5.252  -8.736  1.861  -0.751 C42 8VT 13 
8VT O44 O2  O 0 1 N N N 28.745 -9.430  5.897  -9.939  2.045  -0.147 O44 8VT 14 
8VT C45 C11 C 0 1 N N N 29.305 -8.230  5.252  -10.966 2.666  -0.922 C45 8VT 15 
8VT C43 C12 C 0 1 Y N N 27.608 -9.994  3.971  -7.698  1.259  -0.059 C43 8VT 16 
8VT O37 O3  O 0 1 N N N 27.218 -9.303  1.471  -5.506  0.080  1.202  O37 8VT 17 
8VT O5, O4  O 0 1 N N N 24.695 -10.222 -2.270 -2.060  -2.499 0.726  O5, 8VT 18 
8VT C5, C13 C 0 1 N N R 23.300 -10.404 -2.249 -0.789  -2.155 0.171  C5, 8VT 19 
8VT C6, C14 C 0 1 N N N 22.728 -9.884  -3.598 0.316   -2.886 0.936  C6, 8VT 20 
8VT O6, O5  O 0 1 N N N 22.989 -8.453  -3.812 0.177   -4.295 0.744  O6, 8VT 21 
8VT C4, C15 C 0 1 N N S 22.750 -9.558  -1.050 -0.576  -0.644 0.285  C4, 8VT 22 
8VT C3, C16 C 0 1 N N R 23.440 -10.017 0.229  -1.719  0.081  -0.432 C3, 8VT 23 
8VT O3, O6  O 0 1 N N N 22.943 -9.235  1.377  -1.568  1.492  -0.268 O3, 8VT 24 
8VT O1  O7  O 0 1 N N N 21.380 -9.793  -0.953 0.669   -0.290 -0.321 O1  8VT 25 
8VT C1  C17 C 0 1 N N S 20.553 -8.713  -1.424 1.739   -0.112 0.610  C1  8VT 26 
8VT C2  C18 C 0 1 N N R 19.153 -9.180  -1.321 3.057   0.047  -0.152 C2  8VT 27 
8VT O2  O8  O 0 1 N N N 18.937 -10.217 -2.363 3.327   -1.145 -0.893 O2  8VT 28 
8VT C3  C19 C 0 1 N N S 18.164 -8.089  -1.623 4.189   0.296  0.849  C3  8VT 29 
8VT C4  C20 C 0 1 N N S 18.512 -6.862  -0.789 3.851   1.531  1.689  C4  8VT 30 
8VT O4  O9  O 0 1 N N N 18.070 -7.141  0.569  3.774   2.679  0.841  O4  8VT 31 
8VT C5  C21 C 0 1 N N R 19.970 -6.502  -0.920 2.502   1.315  2.380  C5  8VT 32 
8VT C6  C22 C 0 1 N N N 20.310 -5.328  -0.050 2.128   2.569  3.173  C6  8VT 33 
8VT O6  O10 O 0 1 N N N 21.684 -5.061  -0.084 0.928   2.326  3.910  O6  8VT 34 
8VT O5  O11 O 0 1 N N N 20.705 -7.665  -0.489 1.499   1.058  1.394  O5  8VT 35 
8VT O3  O12 O 0 1 N N N 16.892 -8.589  -1.421 5.411   0.518  0.142  O3  8VT 36 
8VT C24 C23 C 0 1 N N N 15.906 -7.871  -2.176 6.161   -0.671 -0.112 C24 8VT 37 
8VT C25 C24 C 0 1 Y N N 14.532 -8.483  -2.139 7.423   -0.321 -0.857 C25 8VT 38 
8VT C26 C25 C 0 1 Y N N 13.475 -7.845  -2.767 7.424   -0.295 -2.240 C26 8VT 39 
8VT C27 C26 C 0 1 Y N N 12.256 -8.488  -2.668 8.580   0.026  -2.927 C27 8VT 40 
8VT C28 C27 C 0 1 Y N N 12.059 -9.727  -2.028 9.737   0.322  -2.233 C28 8VT 41 
8VT C29 C28 C 0 1 Y N N 13.084 -10.371 -1.438 9.739   0.297  -0.846 C29 8VT 42 
8VT C30 C29 C 0 1 Y N N 14.328 -9.725  -1.549 8.576   -0.020 -0.159 C30 8VT 43 
8VT O31 O13 O 0 1 N N N 12.910 -11.629 -0.774 10.876  0.588  -0.162 O31 8VT 44 
8VT C32 C30 C 0 1 N N N 13.963 -12.435 -0.126 12.034  0.911  -0.935 C32 8VT 45 
8VT H1  H1  H 0 1 N N N 29.416 -12.054 -2.921 -6.153  -4.579 1.590  H1  8VT 46 
8VT H2  H2  H 0 1 N N N 28.928 -10.327 -3.012 -6.873  -2.977 1.301  H2  8VT 47 
8VT H3  H3  H 0 1 N N N 29.551 -11.005 -1.469 -7.037  -4.260 0.078  H3  8VT 48 
8VT H4  H4  H 0 1 N N N 27.243 -9.720  -1.020 -4.752  -1.870 1.481  H4  8VT 49 
8VT H5  H5  H 0 1 N N N 25.149 -11.887 -1.036 -3.172  -2.177 -0.986 H5  8VT 50 
8VT H6  H6  H 0 1 N N N 25.313 -8.962  0.023  -3.092  -0.072 1.224  H6  8VT 51 
8VT H7  H7  H 0 1 N N N 24.946 -11.496 1.662  -4.031  0.554  -1.470 H7  8VT 52 
8VT H8  H8  H 0 1 N N N 25.769 -12.740 3.066  -5.331  1.354  -2.489 H8  8VT 53 
8VT H9  H9  H 0 1 N N N 26.453 -13.477 5.385  -7.187  2.412  -3.705 H9  8VT 54 
8VT H10 H10 H 0 1 N N N 27.761 -11.882 6.802  -9.361  2.737  -2.603 H10 8VT 55 
8VT H11 H11 H 0 1 N N N 29.876 -7.649  5.991  -10.639 3.659  -1.229 H11 8VT 56 
8VT H12 H12 H 0 1 N N N 29.970 -8.532  4.430  -11.171 2.062  -1.805 H12 8VT 57 
8VT H13 H13 H 0 1 N N N 28.487 -7.612  4.853  -11.872 2.752  -0.322 H13 8VT 58 
8VT H14 H14 H 0 1 N N N 27.903 -9.029  3.585  -7.844  0.934  0.960  H14 8VT 59 
8VT H15 H15 H 0 1 N N N 23.026 -11.460 -2.111 -0.759  -2.448 -0.879 H15 8VT 60 
8VT H16 H16 H 0 1 N N N 21.640 -10.048 -3.605 1.289   -2.563 0.566  H16 8VT 61 
8VT H17 H17 H 0 1 N N N 23.190 -10.452 -4.419 0.237   -2.654 1.998  H17 8VT 62 
8VT H18 H18 H 0 1 N N N 22.621 -8.185  -4.646 0.846   -4.822 1.202  H18 8VT 63 
8VT H19 H19 H 0 1 N N N 22.968 -8.495  -1.228 -0.564  -0.356 1.337  H19 8VT 64 
8VT H20 H20 H 0 1 N N N 23.147 -11.065 0.392  -1.699  -0.168 -1.493 H20 8VT 65 
8VT H21 H21 H 0 1 N N N 23.377 -9.526  2.171  -2.263  2.015  -0.692 H21 8VT 66 
8VT H22 H22 H 0 1 N N N 20.806 -8.409  -2.450 1.800   -0.983 1.264  H22 8VT 67 
8VT H23 H23 H 0 1 N N N 18.961 -9.597  -0.322 2.983   0.892  -0.836 H23 8VT 68 
8VT H24 H24 H 0 1 N N N 19.539 -10.938 -2.222 2.647   -1.366 -1.544 H24 8VT 69 
8VT H25 H25 H 0 1 N N N 18.283 -7.813  -2.681 4.298   -0.571 1.500  H25 8VT 70 
8VT H26 H26 H 0 1 N N N 17.923 -6.019  -1.179 4.625   1.684  2.440  H26 8VT 71 
8VT H27 H27 H 0 1 N N N 18.269 -6.398  1.126  3.563   3.499  1.307  H27 8VT 72 
8VT H28 H28 H 0 1 N N N 20.200 -6.266  -1.969 2.573   0.464  3.057  H28 8VT 73 
8VT H29 H29 H 0 1 N N N 19.763 -4.444  -0.408 2.935   2.816  3.863  H29 8VT 74 
8VT H30 H30 H 0 1 N N N 20.012 -5.549  0.985  1.970   3.400  2.486  H30 8VT 75 
8VT H31 H31 H 0 1 N N N 21.876 -4.316  0.473  0.631   3.080  4.438  H31 8VT 76 
8VT H32 H32 H 0 1 N N N 16.237 -7.830  -3.224 6.419   -1.147 0.835  H32 8VT 77 
8VT H33 H33 H 0 1 N N N 15.839 -6.850  -1.773 5.563   -1.357 -0.712 H33 8VT 78 
8VT H34 H34 H 0 1 N N N 13.595 -6.911  -3.296 6.520   -0.527 -2.784 H34 8VT 79 
8VT H35 H35 H 0 1 N N N 11.396 -8.008  -3.111 8.578   0.046  -4.007 H35 8VT 80 
8VT H36 H36 H 0 1 N N N 11.073 -10.167 -2.010 10.640  0.573  -2.770 H36 8VT 81 
8VT H37 H37 H 0 1 N N N 15.191 -10.233 -1.145 8.573   -0.035 0.921  H37 8VT 82 
8VT H38 H38 H 0 1 N N N 13.519 -13.349 0.296  12.287  0.069  -1.579 H38 8VT 83 
8VT H39 H39 H 0 1 N N N 14.726 -12.708 -0.870 11.828  1.789  -1.548 H39 8VT 84 
8VT H40 H40 H 0 1 N N N 14.430 -11.849 0.680  12.869  1.122  -0.267 H40 8VT 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8VT O6, C6, SING N N 1  
8VT C6, C5, SING N N 2  
8VT C26 C27 DOUB Y N 3  
8VT C26 C25 SING Y N 4  
8VT C27 C28 SING Y N 5  
8VT C34 C33 SING N N 6  
8VT O2  C2  SING N N 7  
8VT O5, C5, SING N N 8  
8VT O5, C1, SING N N 9  
8VT C5, C4, SING N N 10 
8VT O35 C33 DOUB N N 11 
8VT C24 C25 SING N N 12 
8VT C24 O3  SING N N 13 
8VT C25 C30 DOUB Y N 14 
8VT C28 C29 DOUB Y N 15 
8VT C33 N1  SING N N 16 
8VT C3  O3  SING N N 17 
8VT C3  C2  SING N N 18 
8VT C3  C4  SING N N 19 
8VT C30 C29 SING Y N 20 
8VT C29 O31 SING N N 21 
8VT C1  C2  SING N N 22 
8VT C1  O1  SING N N 23 
8VT C1  O5  SING N N 24 
8VT N1  C1, SING N N 25 
8VT C1, C2, SING N N 26 
8VT C4, O1  SING N N 27 
8VT C4, C3, SING N N 28 
8VT C5  C4  SING N N 29 
8VT C5  O5  SING N N 30 
8VT C5  C6  SING N N 31 
8VT C4  O4  SING N N 32 
8VT O31 C32 SING N N 33 
8VT O6  C6  SING N N 34 
8VT C2, C3, SING N N 35 
8VT C2, N2  SING N N 36 
8VT C3, O3, SING N N 37 
8VT N2  C36 SING N N 38 
8VT O37 C36 DOUB N N 39 
8VT C36 C38 SING N N 40 
8VT C38 C39 DOUB Y N 41 
8VT C38 C43 SING Y N 42 
8VT C39 C40 SING Y N 43 
8VT C43 C42 DOUB Y N 44 
8VT C40 C41 DOUB Y N 45 
8VT C45 O44 SING N N 46 
8VT C42 C41 SING Y N 47 
8VT C42 O44 SING N N 48 
8VT C34 H1  SING N N 49 
8VT C34 H2  SING N N 50 
8VT C34 H3  SING N N 51 
8VT N1  H4  SING N N 52 
8VT C1, H5  SING N N 53 
8VT C2, H6  SING N N 54 
8VT N2  H7  SING N N 55 
8VT C39 H8  SING N N 56 
8VT C40 H9  SING N N 57 
8VT C41 H10 SING N N 58 
8VT C45 H11 SING N N 59 
8VT C45 H12 SING N N 60 
8VT C45 H13 SING N N 61 
8VT C43 H14 SING N N 62 
8VT C5, H15 SING N N 63 
8VT C6, H16 SING N N 64 
8VT C6, H17 SING N N 65 
8VT O6, H18 SING N N 66 
8VT C4, H19 SING N N 67 
8VT C3, H20 SING N N 68 
8VT O3, H21 SING N N 69 
8VT C1  H22 SING N N 70 
8VT C2  H23 SING N N 71 
8VT O2  H24 SING N N 72 
8VT C3  H25 SING N N 73 
8VT C4  H26 SING N N 74 
8VT O4  H27 SING N N 75 
8VT C5  H28 SING N N 76 
8VT C6  H29 SING N N 77 
8VT C6  H30 SING N N 78 
8VT O6  H31 SING N N 79 
8VT C24 H32 SING N N 80 
8VT C24 H33 SING N N 81 
8VT C26 H34 SING N N 82 
8VT C27 H35 SING N N 83 
8VT C28 H36 SING N N 84 
8VT C30 H37 SING N N 85 
8VT C32 H38 SING N N 86 
8VT C32 H39 SING N N 87 
8VT C32 H40 SING N N 88 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8VT InChI            InChI                1.03  
;InChI=1S/C30H40N2O13/c1-15(35)31-29-22(32-28(39)17-7-5-9-19(11-17)41-3)24(37)26(21(13-34)43-29)45-30-25(38)27(23(36)20(12-33)44-30)42-14-16-6-4-8-18(10-16)40-2/h4-11,20-27,29-30,33-34,36-38H,12-14H2,1-3H3,(H,31,35)(H,32,39)/t20-,21-,22-,23+,24-,25-,26-,27+,29-,30+/m1/s1
;
8VT InChIKey         InChI                1.03  VTZBJCHPYLXRLF-QDEUOWLDSA-N 
8VT SMILES_CANONICAL CACTVS               3.385 "COc1cccc(CO[C@H]2[C@@H](O)[C@@H](CO)O[C@@H](O[C@H]3[C@H](O)[C@@H](NC(=O)c4cccc(OC)c4)[C@H](NC(C)=O)O[C@@H]3CO)[C@@H]2O)c1" 
8VT SMILES           CACTVS               3.385 "COc1cccc(CO[CH]2[CH](O)[CH](CO)O[CH](O[CH]3[CH](O)[CH](NC(=O)c4cccc(OC)c4)[CH](NC(C)=O)O[CH]3CO)[CH]2O)c1" 
8VT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)N[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)OCc3cccc(c3)OC)O)O)NC(=O)c4cccc(c4)OC" 
8VT SMILES           "OpenEye OEToolkits" 2.0.6 "CC(=O)NC1C(C(C(C(O1)CO)OC2C(C(C(C(O2)CO)O)OCc3cccc(c3)OC)O)O)NC(=O)c4cccc(c4)OC" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8VT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 
"~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-2-acetamido-6-(hydroxymethyl)-5-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-4-[(3-methoxyphenyl)methoxy]-3,5-bis(oxidanyl)oxan-2-yl]oxy-4-oxidanyl-oxan-3-yl]-3-methoxy-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8VT "Create component" 2017-03-13 EBI  
8VT "Initial release"  2017-06-21 RCSB 
# 
