data_KHT
#

_chem_comp.id                                   KHT
_chem_comp.name                                 "~{N}-(cyclopropen-1-ylmethyl)-2-[[4-[[4-[3,3,3-tris(fluoranyl)propanoyl]piperazin-1-yl]methyl]pyridin-2-yl]amino]-1~{H}-benzimidazole-5-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H26 F3 N7 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-05-22
_chem_comp.pdbx_modified_date                   2019-12-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       513.515
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KHT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RSR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KHT  C1    C1   C  0  1  N  N  N   2.977  -33.084  -21.005  11.721  -3.289  -0.317  C1    KHT   1  
KHT  C10   C2   C  0  1  Y  N  N  -2.001  -30.965  -17.333   5.162  -0.706  -0.970  C10   KHT   2  
KHT  C11   C3   C  0  1  Y  N  N  -0.635  -31.208  -17.588   6.464  -0.741  -0.559  C11   KHT   3  
KHT  C12   C4   C  0  1  Y  N  N  -3.501  -30.101  -14.169   2.556   1.357   0.385  C12   KHT   4  
KHT  C13   C5   C  0  1  Y  N  N  -4.315  -29.682  -11.841   0.285   1.539  -0.377  C13   KHT   5  
KHT  C14   C6   C  0  1  Y  N  N  -2.861  -29.853  -10.043  -0.402   0.257  -2.168  C14   KHT   6  
KHT  C15   C7   C  0  1  Y  N  N  -3.862  -29.527   -9.148  -1.658   0.831  -2.147  C15   KHT   7  
KHT  C16   C8   C  0  1  Y  N  N  -5.183  -29.260   -9.620  -1.946   1.800  -1.196  C16   KHT   8  
KHT  C17   C9   C  0  1  Y  N  N  -5.381  -29.356  -11.023  -0.957   2.158  -0.297  C17   KHT   9  
KHT  C18   C10  C  0  1  N  N  N  -6.326  -28.897   -8.649  -3.306   2.447  -1.143  C18   KHT  10  
KHT  C19   C11  C  0  1  N  N  N  -7.066  -27.091   -9.692  -5.435   2.394   0.011  C19   KHT  11  
KHT  C2    C12  C  0  1  N  N  N   3.624  -32.578  -19.878  11.326  -1.852  -0.095  C2    KHT  12  
KHT  C20   C13  C  0  1  N  N  N  -7.669  -25.715   -9.445  -6.238   1.642   1.078  C20   KHT  13  
KHT  C21   C14  C  0  1  N  N  N  -7.246  -25.724   -7.233  -5.207  -0.500   0.227  C21   KHT  14  
KHT  C22   C15  C  0  1  N  N  N  -7.058  -27.241   -7.350  -4.444   0.336  -0.806  C22   KHT  15  
KHT  C23   C16  C  0  1  N  N  N  -6.221  -23.887   -8.600  -7.622  -0.331   0.621  C23   KHT  16  
KHT  C24   C17  C  0  1  N  N  N  -5.502  -23.168   -7.439  -7.769  -1.761   0.170  C24   KHT  17  
KHT  C25   C18  C  0  1  N  N  N  -4.862  -21.815   -7.963  -9.242  -2.169   0.242  C25   KHT  18  
KHT  C3    C19  C  0  1  N  N  N   4.367  -32.998  -20.978  12.086  -2.079  -1.138  C3    KHT  19  
KHT  C4    C20  C  0  1  N  N  N   3.555  -31.984  -18.475  10.576  -0.850   0.743  C4    KHT  20  
KHT  C5    C21  C  0  1  N  N  N   1.772  -31.391  -16.829   8.311   0.030   0.924  C5    KHT  21  
KHT  C6    C22  C  0  1  Y  N  N   0.305  -31.123  -16.550   6.900   0.079   0.489  C6    KHT  22  
KHT  C7    C23  C  0  1  Y  N  N  -0.123  -30.797  -15.247   6.008   0.939   1.122  C7    KHT  23  
KHT  C8    C24  C  0  1  Y  N  N  -1.501  -30.551  -14.989   4.678   0.978   0.705  C8    KHT  24  
KHT  C9    C25  C  0  1  Y  N  N  -2.431  -30.632  -16.014   4.258   0.147  -0.349  C9    KHT  25  
KHT  F1    F1   F  0  1  N  N  N  -3.807  -21.479   -7.179  -9.379  -3.497  -0.177  F1    KHT  26  
KHT  F2    F2   F  0  1  N  N  N  -4.454  -21.975   -9.239  -9.696  -2.046   1.559  F2    KHT  27  
KHT  F3    F3   F  0  1  N  N  N  -5.799  -20.826   -7.918  -9.997  -1.337  -0.591  F3    KHT  28  
KHT  N1    N1   N  0  1  N  N  N   2.172  -31.711  -18.154   9.176  -0.802   0.312  N1    KHT  29  
KHT  N2    N2   N  0  1  Y  N  N  -3.662  -30.343  -15.459   2.914   0.410  -0.532  N2    KHT  30  
KHT  N3    N3   N  0  1  Y  N  N  -2.203  -30.218  -13.865   3.594   1.691   1.110  N3    KHT  31  
KHT  N4    N4   N  0  1  N  N  N  -4.539  -29.772  -13.275   1.288   1.886   0.525  N4    KHT  32  
KHT  N5    N5   N  0  1  Y  N  N  -3.100  -29.925  -11.351   0.522   0.619  -1.298  N5    KHT  33  
KHT  N6    N6   N  0  1  N  N  N  -6.470  -27.644   -8.560  -4.183   1.672  -0.254  N6    KHT  34  
KHT  N7    N7   N  0  1  N  N  N  -7.038  -25.100   -8.410  -6.404   0.248   0.641  N7    KHT  35  
KHT  O1    O1   O  0  1  N  N  N   2.599  -31.340  -15.937   8.691   0.741   1.834  O1    KHT  36  
KHT  O2    O2   O  0  1  N  N  N  -6.105  -23.426   -9.713  -8.598   0.300   0.966  O2    KHT  37  
KHT  H1    H1   H  0  1  N  N  N   2.397  -32.412  -21.654  12.482  -3.724   0.332  H1    KHT  38  
KHT  H11   H2   H  0  1  N  N  N   2.486  -34.067  -20.962  10.974  -3.978  -0.712  H11   KHT  39  
KHT  H101  H3   H  0  0  N  N  N  -2.721  -31.031  -18.136   4.836  -1.338  -1.782  H101  KHT  40  
KHT  H111  H4   H  0  0  N  N  N  -0.311  -31.461  -18.587   7.162  -1.406  -1.046  H111  KHT  41  
KHT  H141  H5   H  0  0  N  N  N  -1.866  -30.053   -9.675  -0.173  -0.497  -2.906  H141  KHT  42  
KHT  H151  H6   H  0  0  N  N  N  -3.645  -29.474   -8.091  -2.407   0.529  -2.863  H151  KHT  43  
KHT  H171  H7   H  0  0  N  N  N  -6.357  -29.176  -11.448  -1.148   2.909   0.456  H171  KHT  44  
KHT  H181  H8   H  0  0  N  N  N  -7.263  -29.341   -9.016  -3.211   3.464  -0.762  H181  KHT  45  
KHT  H182  H9   H  0  0  N  N  N  -6.094  -29.303   -7.653  -3.736   2.472  -2.144  H182  KHT  46  
KHT  H192  H10  H  0  0  N  N  N  -7.865  -27.767  -10.031  -6.019   2.457  -0.907  H192  KHT  47  
KHT  H191  H11  H  0  0  N  N  N  -6.303  -27.001  -10.479  -5.207   3.398   0.367  H191  KHT  48  
KHT  H201  H12  H  0  0  N  N  N  -7.559  -25.103  -10.352  -5.701   1.667   2.026  H201  KHT  49  
KHT  H202  H13  H  0  0  N  N  N  -8.737  -25.825   -9.205  -7.216   2.108   1.195  H202  KHT  50  
KHT  H212  H14  H  0  0  N  N  N  -6.533  -25.333   -6.492  -5.503  -1.450  -0.217  H212  KHT  51  
KHT  H211  H15  H  0  0  N  N  N  -8.273  -25.518   -6.898  -4.569  -0.683   1.092  H211  KHT  52  
KHT  H222  H16  H  0  0  N  N  N  -8.044  -27.721   -7.266  -3.498  -0.151  -1.042  H222  KHT  53  
KHT  H221  H17  H  0  0  N  N  N  -6.415  -27.576   -6.523  -5.042   0.428  -1.713  H221  KHT  54  
KHT  H241  H18  H  0  0  N  N  N  -6.227  -22.945   -6.642  -7.415  -1.857  -0.857  H241  KHT  55  
KHT  H242  H19  H  0  0  N  N  N  -4.709  -23.818   -7.042  -7.180  -2.409   0.819  H242  KHT  56  
KHT  H31   H20  H  0  1  N  N  N   5.322  -33.148  -21.459  12.610  -1.678  -1.992  H31   KHT  57  
KHT  H42   H21  H  0  1  N  N  N   3.969  -32.700  -17.749  10.623  -1.145   1.792  H42   KHT  58  
KHT  H41   H22  H  0  1  N  N  N   4.134  -31.050  -18.440  11.027   0.135   0.623  H41   KHT  59  
KHT  H71   H23  H  0  1  N  N  N   0.596  -30.734  -14.443   6.343   1.571   1.931  H71   KHT  60  
KHT  H12   H24  H  0  1  N  N  N   1.484  -31.748  -18.879   8.873  -1.369  -0.414  H12   KHT  61  
KHT  H2    H25  H  0  1  N  N  N  -4.532  -30.320  -15.952   2.332  -0.002  -1.189  H2    KHT  62  
KHT  H43   H27  H  0  1  N  N  N  -5.455  -29.596  -13.636   1.096   2.500   1.252  H43   KHT  63  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KHT  C1   C3    SING  N  N   1  
KHT  C1   C2    SING  N  N   2  
KHT  C3   C2    DOUB  N  N   3  
KHT  C2   C4    SING  N  N   4  
KHT  C4   N1    SING  N  N   5  
KHT  N1   C5    SING  N  N   6  
KHT  C11  C10   DOUB  Y  N   7  
KHT  C11  C6    SING  Y  N   8  
KHT  C10  C9    SING  Y  N   9  
KHT  C5   C6    SING  N  N  10  
KHT  C5   O1    DOUB  N  N  11  
KHT  C6   C7    DOUB  Y  N  12  
KHT  C9   N2    SING  Y  N  13  
KHT  C9   C8    DOUB  Y  N  14  
KHT  N2   C12   SING  Y  N  15  
KHT  C7   C8    SING  Y  N  16  
KHT  C8   N3    SING  Y  N  17  
KHT  C12  N3    DOUB  Y  N  18  
KHT  C12  N4    SING  N  N  19  
KHT  N4   C13   SING  N  N  20  
KHT  C13  N5    DOUB  Y  N  21  
KHT  C13  C17   SING  Y  N  22  
KHT  N5   C14   SING  Y  N  23  
KHT  C17  C16   DOUB  Y  N  24  
KHT  C14  C15   DOUB  Y  N  25  
KHT  O2   C23   DOUB  N  N  26  
KHT  C19  C20   SING  N  N  27  
KHT  C19  N6    SING  N  N  28  
KHT  C16  C15   SING  Y  N  29  
KHT  C16  C18   SING  N  N  30  
KHT  C20  N7    SING  N  N  31  
KHT  F2   C25   SING  N  N  32  
KHT  C18  N6    SING  N  N  33  
KHT  C23  N7    SING  N  N  34  
KHT  C23  C24   SING  N  N  35  
KHT  N6   C22   SING  N  N  36  
KHT  N7   C21   SING  N  N  37  
KHT  C25  F3    SING  N  N  38  
KHT  C25  C24   SING  N  N  39  
KHT  C25  F1    SING  N  N  40  
KHT  C22  C21   SING  N  N  41  
KHT  C1   H1    SING  N  N  42  
KHT  C1   H11   SING  N  N  43  
KHT  C10  H101  SING  N  N  44  
KHT  C11  H111  SING  N  N  45  
KHT  C14  H141  SING  N  N  46  
KHT  C15  H151  SING  N  N  47  
KHT  C17  H171  SING  N  N  48  
KHT  C18  H181  SING  N  N  49  
KHT  C18  H182  SING  N  N  50  
KHT  C19  H192  SING  N  N  51  
KHT  C19  H191  SING  N  N  52  
KHT  C20  H201  SING  N  N  53  
KHT  C20  H202  SING  N  N  54  
KHT  C21  H212  SING  N  N  55  
KHT  C21  H211  SING  N  N  56  
KHT  C22  H222  SING  N  N  57  
KHT  C22  H221  SING  N  N  58  
KHT  C24  H241  SING  N  N  59  
KHT  C24  H242  SING  N  N  60  
KHT  C3   H31   SING  N  N  61  
KHT  C4   H42   SING  N  N  62  
KHT  C4   H41   SING  N  N  63  
KHT  C7   H71   SING  N  N  64  
KHT  N1   H12   SING  N  N  65  
KHT  N2   H2    SING  N  N  66  
KHT  N4   H43   SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KHT  InChI             InChI                 1.03   "InChI=1S/C25H26F3N7O2/c26-25(27,28)13-22(36)35-9-7-34(8-10-35)15-17-5-6-29-21(11-17)33-24-31-19-4-3-18(12-20(19)32-24)23(37)30-14-16-1-2-16/h1,3-6,11-12H,2,7-10,13-15H2,(H,30,37)(H2,29,31,32,33)"  
KHT  InChIKey          InChI                 1.03   FPRFVGAHHDDSJS-UHFFFAOYSA-N  
KHT  SMILES_CANONICAL  CACTVS                3.385  "FC(F)(F)CC(=O)N1CCN(CC1)Cc2ccnc(Nc3[nH]c4ccc(cc4n3)C(=O)NCC5=CC5)c2"  
KHT  SMILES            CACTVS                3.385  "FC(F)(F)CC(=O)N1CCN(CC1)Cc2ccnc(Nc3[nH]c4ccc(cc4n3)C(=O)NCC5=CC5)c2"  
KHT  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc2c(cc1C(=O)NCC3=CC3)nc([nH]2)Nc4cc(ccn4)CN5CCN(CC5)C(=O)CC(F)(F)F"  
KHT  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc2c(cc1C(=O)NCC3=CC3)nc([nH]2)Nc4cc(ccn4)CN5CCN(CC5)C(=O)CC(F)(F)F"  
#
_pdbx_chem_comp_identifier.comp_id          KHT
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-(cyclopropen-1-ylmethyl)-2-[[4-[[4-[3,3,3-tris(fluoranyl)propanoyl]piperazin-1-yl]methyl]pyridin-2-yl]amino]-1~{H}-benzimidazole-5-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KHT  "Create component"  2019-05-22  PDBE  
KHT  "Initial release"   2020-01-01  RCSB  
##
