data_PRT
#

_chem_comp.id                                   PRT
_chem_comp.name                                 " PHOSPHORIBOSYL ATP "
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H25 N5 O20 P4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "[[(2~{R},3~{S},4~{R},5~{R})-5-[6-azanylidene-1-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-08-15
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       719.276
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PRT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5UBG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PRT  O1G    O1   O  0  1  N  N  N  11.425  -22.638  -21.914    9.466   2.979  -1.893  O1G    PRT   1  
PRT  PG     P1   P  0  1  N  N  N  12.006  -22.004  -23.359    9.486   2.895  -0.285  PG     PRT   2  
PRT  O2G    O2   O  0  1  N  N  N  11.769  -23.013  -24.561   10.803   2.393   0.166  O2G    PRT   3  
PRT  O3G    O3   O  0  1  N  N  N  11.500  -20.651  -23.684    9.229   4.360   0.332  O3G    PRT   4  
PRT  O3B    O4   O  0  1  N  N  N  13.627  -22.025  -23.241    8.330   1.892   0.214  O3B    PRT   5  
PRT  PB     P2   P  0  1  N  N  N  14.674  -20.987  -23.901    8.206   0.290   0.315  PB     PRT   6  
PRT  O1B    O5   O  0  1  N  N  N  15.210  -21.527  -25.316    8.819  -0.329  -0.881  O1B    PRT   7  
PRT  O2B    O6   O  0  1  N  N  N  14.427  -19.537  -23.913    8.968  -0.225   1.636  O2B    PRT   8  
PRT  O3A    O7   O  0  1  N  N  N  15.738  -21.140  -22.749    6.652  -0.124   0.396  O3A    PRT   9  
PRT  PA     P3   P  0  1  N  N  N  17.060  -21.896  -22.788    5.852  -1.509   0.208  PA     PRT  10  
PRT  O1A    O8   O  0  1  N  N  N  16.748  -23.345  -22.308    5.775  -1.875  -1.358  O1A    PRT  11  
PRT  O2A    O9   O  0  1  N  N  N  17.848  -21.845  -24.049    6.558  -2.589   0.933  O2A    PRT  12  
PRT  "O5'"  O10  O  0  1  N  N  N  17.814  -21.214  -21.522    4.362  -1.352   0.797  "O5'"  PRT  13  
PRT  "C5'"  C1   C  0  1  N  N  N  17.213  -21.159  -20.234    3.437  -2.438   0.872  "C5'"  PRT  14  
PRT  "C4'"  C2   C  0  1  N  N  R  18.111  -20.289  -19.359    2.121  -1.946   1.479  "C4'"  PRT  15  
PRT  "O4'"  O11  O  0  1  N  N  N  19.391  -20.954  -19.159    1.489  -1.015   0.585  "O4'"  PRT  16  
PRT  "C3'"  C3   C  0  1  N  N  S  18.520  -18.943  -19.937    1.154  -3.132   1.664  "C3'"  PRT  17  
PRT  "O3'"  O12  O  0  1  N  N  N  17.493  -18.005  -19.763    0.806  -3.283   3.042  "O3'"  PRT  18  
PRT  "C2'"  C4   C  0  1  N  N  R  19.722  -18.630  -19.011   -0.090  -2.740   0.830  "C2'"  PRT  19  
PRT  "O2'"  O13  O  0  1  N  N  N  19.257  -18.124  -17.769   -1.294  -3.084   1.519  "O2'"  PRT  20  
PRT  "C1'"  C5   C  0  1  N  N  R  20.370  -19.970  -18.810    0.064  -1.202   0.720  "C1'"  PRT  21  
PRT  N9     N1   N  0  1  Y  N  N  21.572  -20.211  -19.705   -0.637  -0.697  -0.463  N9     PRT  22  
PRT  C8     C6   C  0  1  Y  N  N  22.782  -20.543  -19.241   -0.107  -0.544  -1.714  C8     PRT  23  
PRT  C4     C7   C  0  1  Y  N  N  21.674  -20.137  -21.021   -1.933  -0.301  -0.520  C4     PRT  24  
PRT  C5     C8   C  0  1  Y  N  N  22.940  -20.424  -21.389   -2.156   0.098  -1.851  C5     PRT  25  
PRT  N7     N2   N  0  1  Y  N  N  23.618  -20.682  -20.273   -1.017  -0.067  -2.524  N7     PRT  26  
PRT  C6     C9   C  0  1  N  N  N  23.292  -20.414  -22.693   -3.492   0.596  -2.225  C6     PRT  27  
PRT  N6     N3   N  0  1  N  N  N  24.559  -20.702  -22.991   -3.729   1.301  -3.306  N6     PRT  28  
PRT  N3     N4   N  0  1  N  N  N  20.744  -19.847  -21.939   -2.918  -0.230   0.393  N3     PRT  29  
PRT  C2     C10  C  0  1  N  N  N  21.072  -19.828  -23.264   -4.133   0.065   0.002  C2     PRT  30  
PRT  N1     N5   N  0  1  N  N  N  22.381  -20.113  -23.649   -4.480   0.235  -1.305  N1     PRT  31  
PRT  C11    C11  C  0  1  N  N  R  22.633  -20.143  -25.107   -5.867   0.043  -1.738  C11    PRT  32  
PRT  C12    C12  C  0  1  N  N  R  23.617  -19.226  -25.719   -6.313  -1.423  -1.505  C12    PRT  33  
PRT  O12    O14  O  0  1  N  N  N  22.930  -18.021  -26.063   -5.955  -2.248  -2.615  O12    PRT  34  
PRT  C13    C13  C  0  1  N  N  S  23.934  -20.013  -26.988   -7.851  -1.280  -1.395  C13    PRT  35  
PRT  O13    O15  O  0  1  N  N  N  22.880  -19.856  -27.954   -8.475  -1.589  -2.642  O13    PRT  36  
PRT  O14    O16  O  0  1  N  N  N  23.184  -21.484  -25.304   -6.768   0.809  -0.911  O14    PRT  37  
PRT  C14    C14  C  0  1  N  N  R  23.913  -21.465  -26.548   -8.067   0.203  -1.036  C14    PRT  38  
PRT  C15    C15  C  0  1  N  N  N  25.317  -22.036  -26.312   -8.824   0.313   0.290  C15    PRT  39  
PRT  O15    O17  O  0  1  N  N  N  26.088  -21.152  -25.489   -9.122   1.685   0.556  O15    PRT  40  
PRT  P      P4   P  0  1  N  N  N  27.692  -21.208  -25.543   -9.913   2.171   1.871  P      PRT  41  
PRT  O3P    O18  O  0  1  N  N  N  28.131  -22.450  -24.654  -10.185   3.755   1.779  O3P    PRT  42  
PRT  O1P    O19  O  0  1  N  N  N  28.129  -21.563  -27.024  -11.204   1.453   1.964  O1P    PRT  43  
PRT  O2P    O20  O  0  1  N  N  N  28.294  -19.984  -24.961   -9.028   1.854   3.178  O2P    PRT  44  
PRT  H1     H1   H  0  1  N  N  N  11.053  -23.498  -22.072    8.631   3.301  -2.259  H1     PRT  45  
PRT  H2     H2   H  0  1  N  N  N  11.129  -20.653  -24.558    9.889   5.017   0.073  H2     PRT  46  
PRT  H3     H3   H  0  1  N  N  N  14.635  -19.187  -24.771    8.618   0.141   2.460  H3     PRT  47  
PRT  H4     H4   H  0  1  N  N  N  17.124  -23.969  -22.918    5.324  -1.210  -1.896  H4     PRT  48  
PRT  H5     H5   H  0  1  N  N  N  16.209  -20.715  -20.304    3.252  -2.829  -0.128  H5     PRT  49  
PRT  H6     H6   H  0  1  N  N  N  17.137  -22.171  -19.809    3.853  -3.227   1.499  H6     PRT  50  
PRT  H7     H7   H  0  1  N  N  N  17.617  -20.128  -18.389    2.312  -1.467   2.439  H7     PRT  51  
PRT  H8     H8   H  0  1  N  N  N  18.846  -19.040  -20.983    1.599  -4.050   1.281  H8     PRT  52  
PRT  H9     H9   H  0  1  N  N  N  17.761  -17.170  -20.128    0.199  -4.015   3.216  H9     PRT  53  
PRT  H10    H10  H  0  1  N  N  N  20.412  -17.933  -19.509   -0.061  -3.206  -0.155  H10    PRT  54  
PRT  H11    H11  H  0  1  N  N  N  19.999  -17.934  -17.206   -1.392  -4.031   1.692  H11    PRT  55  
PRT  H12    H12  H  0  1  N  N  N  20.671  -20.080  -17.758   -0.304  -0.714   1.622  H12    PRT  56  
PRT  H13    H13  H  0  1  N  N  N  23.041  -20.677  -18.201    0.910  -0.781  -1.991  H13    PRT  57  
PRT  H14    H14  H  0  1  N  N  N  25.102  -20.895  -22.173   -3.002   1.522  -3.910  H14    PRT  58  
PRT  H16    H16  H  0  1  N  N  N  20.324  -19.594  -24.007   -4.899   0.179   0.754  H16    PRT  59  
PRT  H17    H17  H  0  1  N  N  N  21.676  -20.058  -25.642   -5.981   0.317  -2.787  H17    PRT  60  
PRT  H18    H18  H  0  1  N  N  N  24.507  -19.068  -25.092   -5.892  -1.815  -0.579  H18    PRT  61  
PRT  H19    H19  H  0  1  N  N  N  22.733  -17.532  -25.273   -6.214  -3.175  -2.516  H19    PRT  62  
PRT  H20    H20  H  0  1  N  N  N  24.918  -19.733  -27.391   -8.236  -1.924  -0.604  H20    PRT  63  
PRT  H21    H21  H  0  1  N  N  N  22.859  -18.956  -28.257   -8.370  -2.510  -2.917  H21    PRT  64  
PRT  H22    H22  H  0  1  N  N  N  23.397  -22.071  -27.307   -8.632   0.697  -1.827  H22    PRT  65  
PRT  H23    H23  H  0  1  N  N  N  25.231  -23.012  -25.813   -9.752  -0.255   0.226  H23    PRT  66  
PRT  H24    H24  H  0  1  N  N  N  25.823  -22.163  -27.280   -8.207  -0.088   1.094  H24    PRT  67  
PRT  H25    H25  H  0  1  N  N  N  28.545  -23.104  -25.205  -10.660   4.118   2.540  H25    PRT  68  
PRT  H26    H26  H  0  1  N  N  N  28.876  -19.584  -25.596   -8.166   2.292   3.185  H26    PRT  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PRT  O13    C13    SING  N  N   1  
PRT  O1P    P      DOUB  N  N   2  
PRT  C13    C14    SING  N  N   3  
PRT  C13    C12    SING  N  N   4  
PRT  C14    C15    SING  N  N   5  
PRT  C14    O14    SING  N  N   6  
PRT  C15    O15    SING  N  N   7  
PRT  O12    C12    SING  N  N   8  
PRT  C12    C11    SING  N  N   9  
PRT  P      O15    SING  N  N  10  
PRT  P      O2P    SING  N  N  11  
PRT  P      O3P    SING  N  N  12  
PRT  O1B    PB     DOUB  N  N  13  
PRT  O14    C11    SING  N  N  14  
PRT  C11    N1     SING  N  N  15  
PRT  O2G    PG     DOUB  N  N  16  
PRT  O2A    PA     DOUB  N  N  17  
PRT  O2B    PB     SING  N  N  18  
PRT  PB     O3B    SING  N  N  19  
PRT  PB     O3A    SING  N  N  20  
PRT  O3G    PG     SING  N  N  21  
PRT  N1     C2     SING  N  N  22  
PRT  N1     C6     SING  N  N  23  
PRT  PG     O3B    SING  N  N  24  
PRT  PG     O1G    SING  N  N  25  
PRT  C2     N3     DOUB  N  N  26  
PRT  N6     C6     DOUB  N  N  27  
PRT  PA     O3A    SING  N  N  28  
PRT  PA     O1A    SING  N  N  29  
PRT  PA     "O5'"  SING  N  N  30  
PRT  C6     C5     SING  N  N  31  
PRT  N3     C4     SING  N  N  32  
PRT  "O5'"  "C5'"  SING  N  N  33  
PRT  C5     C4     DOUB  Y  N  34  
PRT  C5     N7     SING  Y  N  35  
PRT  C4     N9     SING  Y  N  36  
PRT  N7     C8     DOUB  Y  N  37  
PRT  "C5'"  "C4'"  SING  N  N  38  
PRT  "C3'"  "O3'"  SING  N  N  39  
PRT  "C3'"  "C4'"  SING  N  N  40  
PRT  "C3'"  "C2'"  SING  N  N  41  
PRT  N9     C8     SING  Y  N  42  
PRT  N9     "C1'"  SING  N  N  43  
PRT  "C4'"  "O4'"  SING  N  N  44  
PRT  "O4'"  "C1'"  SING  N  N  45  
PRT  "C2'"  "C1'"  SING  N  N  46  
PRT  "C2'"  "O2'"  SING  N  N  47  
PRT  O1G    H1     SING  N  N  48  
PRT  O3G    H2     SING  N  N  49  
PRT  O2B    H3     SING  N  N  50  
PRT  O1A    H4     SING  N  N  51  
PRT  "C5'"  H5     SING  N  N  52  
PRT  "C5'"  H6     SING  N  N  53  
PRT  "C4'"  H7     SING  N  N  54  
PRT  "C3'"  H8     SING  N  N  55  
PRT  "O3'"  H9     SING  N  N  56  
PRT  "C2'"  H10    SING  N  N  57  
PRT  "O2'"  H11    SING  N  N  58  
PRT  "C1'"  H12    SING  N  N  59  
PRT  C8     H13    SING  N  N  60  
PRT  N6     H14    SING  N  N  61  
PRT  C2     H16    SING  N  N  62  
PRT  C11    H17    SING  N  N  63  
PRT  C12    H18    SING  N  N  64  
PRT  O12    H19    SING  N  N  65  
PRT  C13    H20    SING  N  N  66  
PRT  O13    H21    SING  N  N  67  
PRT  C14    H22    SING  N  N  68  
PRT  C15    H23    SING  N  N  69  
PRT  C15    H24    SING  N  N  70  
PRT  O3P    H25    SING  N  N  71  
PRT  O2P    H26    SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PRT  InChI             InChI                 1.03   "InChI=1S/C15H25N5O20P4/c16-12-7-13(18-4-19(12)14-10(23)8(21)5(37-14)1-35-41(25,26)27)20(3-17-7)15-11(24)9(22)6(38-15)2-36-43(31,32)40-44(33,34)39-42(28,29)30/h3-6,8-11,14-16,21-24H,1-2H2,(H,31,32)(H,33,34)(H2,25,26,27)(H2,28,29,30)/b16-12-/t5-,6-,8-,9-,10-,11-,14-,15-/m1/s1"  
PRT  InChIKey          InChI                 1.03   RKNHJBVBFHDXGR-DNVSJNHSSA-N  
PRT  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=Nc3n(cnc3C2=N)[C@@H]4O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]4O"  
PRT  SMILES            CACTVS                3.385  "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=Nc3n(cnc3C2=N)[CH]4O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]4O"  
PRT  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "[H]/N=C\1/c2c(n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N=CN1[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(O)O)O)O"  
PRT  SMILES            "OpenEye OEToolkits"  2.0.6  "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N=CN(C2=N)C4C(C(C(O4)COP(=O)(O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          PRT
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "[[(2~{R},3~{S},4~{R},5~{R})-5-[6-azanylidene-1-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PRT  "Create component"    2003-08-15  RCSB  
PRT  "Modify descriptor"   2011-06-04  RCSB  
PRT  "Modify name"         2011-06-07  RCSB  
PRT  "Modify descriptor"   2011-06-07  RCSB  
PRT  "Modify identifier"   2011-06-07  RCSB  
PRT  "Other modification"  2017-03-31  RCSB  
PRT  "Modify synonyms"     2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PRT
_pdbx_chem_comp_synonyms.name        "[[(2~{R},3~{S},4~{R},5~{R})-5-[6-azanylidene-1-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
