data_PVT
#

_chem_comp.id                                   PVT
_chem_comp.name                                 "5-[[4-(pyridin-3-ylmethylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino]-1,3-dihydroindol-2-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H15 F3 N6 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-29
_chem_comp.pdbx_modified_date                   2021-02-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       400.357
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PVT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6YVS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PVT  C1   C1   C  0  1  Y  N  N  27.995  -10.524  14.587   4.878  -1.401  -0.236  C1   PVT   1  
PVT  C2   C2   C  0  1  Y  N  N  28.071   -9.475  13.689   5.673  -1.473   0.897  C2   PVT   2  
PVT  C3   C3   C  0  1  Y  N  N  28.743   -9.630  12.494   7.050  -1.444   0.740  C3   PVT   3  
PVT  C7   C4   C  0  1  N  N  N  27.248  -10.402  15.891   3.376  -1.429  -0.118  C7   PVT   4  
PVT  C9   C5   C  0  1  Y  N  N  23.464  -10.601  14.311  -0.648  -0.636   0.260  C9   PVT   5  
PVT  C11  C6   C  0  1  Y  N  N  22.915   -8.503  14.954  -0.346   1.646   0.400  C11  PVT   6  
PVT  C12  C7   C  0  1  Y  N  N  24.173   -8.297  15.486   1.018   1.467   0.278  C12  PVT   7  
PVT  C13  C8   C  0  1  Y  N  N  25.068   -9.390  15.380   1.510   0.166   0.146  C13  PVT   8  
PVT  C15  C9   C  0  1  N  N  N  24.527   -6.979  16.111   1.954   2.648   0.288  C15  PVT   9  
PVT  C19  C10  C  0  1  Y  N  N  25.951  -14.047  13.243  -5.085  -2.126   1.039  C19  PVT  10  
PVT  C20  C11  C  0  1  Y  N  N  25.216  -12.882  13.393  -3.722  -2.332   1.023  C20  PVT  11  
PVT  C21  C12  C  0  1  Y  N  N  23.827  -12.929  13.508  -2.897  -1.506   0.271  C21  PVT  12  
PVT  C22  C13  C  0  1  Y  N  N  23.164  -14.151  13.457  -3.453  -0.468  -0.469  C22  PVT  13  
PVT  C24  C14  C  0  1  Y  N  N  23.892  -15.321  13.309  -4.813  -0.266  -0.451  C24  PVT  14  
PVT  O28  O1   O  0  1  N  N  N  24.975  -18.701  13.130  -8.135   0.936  -0.961  O28  PVT  15  
PVT  N29  N1   N  0  1  N  N  N  23.089  -11.755  13.705  -1.513  -1.717   0.258  N29  PVT  16  
PVT  C4   C15  C  0  1  Y  N  N  29.331  -10.847  12.232   7.581  -1.344  -0.532  C4   PVT  17  
PVT  N5   N2   N  0  1  Y  N  N  29.281  -11.881  13.077   6.794  -1.277  -1.588  N5   PVT  18  
PVT  C6   C16  C  0  1  Y  N  N  28.622  -11.703  14.228   5.480  -1.298  -1.476  C6   PVT  19  
PVT  N8   N3   N  0  1  N  N  N  26.299   -9.305  15.907   2.871  -0.061   0.021  N8   PVT  20  
PVT  N10  N4   N  0  1  Y  N  N  22.536   -9.639  14.366  -1.142   0.587   0.387  N10  PVT  21  
PVT  N14  N5   N  0  1  Y  N  N  24.712  -10.533  14.786   0.654  -0.850   0.141  N14  PVT  22  
PVT  F16  F1   F  0  1  N  N  N  23.563   -6.091  15.997   2.668   2.687  -0.915  F16  PVT  23  
PVT  F17  F2   F  0  1  N  N  N  24.789   -7.081  17.396   1.216   3.827   0.431  F17  PVT  24  
PVT  F18  F3   F  0  1  N  N  N  25.597   -6.441  15.580   2.849   2.525   1.357  F18  PVT  25  
PVT  C23  C17  C  0  1  Y  N  N  25.277  -15.260  13.214  -5.647  -1.091   0.295  C23  PVT  26  
PVT  C25  C18  C  0  1  N  N  N  23.482  -16.758  13.226  -5.710   0.746  -1.126  C25  PVT  27  
PVT  C26  C19  C  0  1  N  N  N  24.805  -17.488  13.160  -7.102   0.377  -0.658  C26  PVT  28  
PVT  N27  N6   N  0  1  N  N  N  25.791  -16.555  13.148  -6.977  -0.688   0.151  N27  PVT  29  
PVT  H1   H1   H  0  1  N  N  N  27.602   -8.531  13.924   5.230  -1.551   1.879  H1   PVT  30  
PVT  H2   H2   H  0  1  N  N  N  28.806   -8.819  11.784   7.700  -1.497   1.601  H2   PVT  31  
PVT  H3   H3   H  0  1  N  N  N  26.701  -11.340  16.069   2.949  -1.885  -1.012  H3   PVT  32  
PVT  H4   H4   H  0  1  N  N  N  27.978  -10.244  16.698   3.091  -2.012   0.758  H4   PVT  33  
PVT  H5   H5   H  0  1  N  N  N  22.197   -7.699  15.018  -0.759   2.638   0.504  H5   PVT  34  
PVT  H6   H6   H  0  1  N  N  N  27.026  -14.012  13.151  -5.720  -2.773   1.627  H6   PVT  35  
PVT  H7   H7   H  0  1  N  N  N  25.723  -11.929  13.421  -3.293  -3.139   1.599  H7   PVT  36  
PVT  H8   H8   H  0  1  N  N  N  22.087  -14.188  13.532  -2.817   0.179  -1.056  H8   PVT  37  
PVT  H9   H9   H  0  1  N  N  N  22.155  -11.770  13.349  -1.160  -2.620   0.247  H9   PVT  38  
PVT  H10  H10  H  0  1  N  N  N  29.858  -10.972  11.298   8.653  -1.320  -0.662  H10  PVT  39  
PVT  H11  H11  H  0  1  N  N  N  28.577  -12.532  14.919   4.868  -1.241  -2.364  H11  PVT  40  
PVT  H12  H12  H  0  1  N  N  N  26.748   -8.547  15.435   3.490   0.686   0.024  H12  PVT  41  
PVT  H13  H13  H  0  1  N  N  N  22.882  -16.946  12.324  -5.455   1.757  -0.805  H13  PVT  42  
PVT  H14  H14  H  0  1  N  N  N  22.910  -17.058  14.116  -5.634   0.660  -2.210  H14  PVT  43  
PVT  H15  H15  H  0  1  N  N  N  26.766  -16.770  13.098  -7.726  -1.128   0.585  H15  PVT  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PVT  C4   C3   DOUB  Y  N   1  
PVT  C4   N5   SING  Y  N   2  
PVT  C3   C2   SING  Y  N   3  
PVT  N5   C6   DOUB  Y  N   4  
PVT  O28  C26  DOUB  N  N   5  
PVT  N27  C26  SING  N  N   6  
PVT  N27  C23  SING  N  N   7  
PVT  C26  C25  SING  N  N   8  
PVT  C23  C19  DOUB  Y  N   9  
PVT  C23  C24  SING  Y  N  10  
PVT  C25  C24  SING  N  N  11  
PVT  C19  C20  SING  Y  N  12  
PVT  C24  C22  DOUB  Y  N  13  
PVT  C20  C21  DOUB  Y  N  14  
PVT  C22  C21  SING  Y  N  15  
PVT  C21  N29  SING  N  N  16  
PVT  C2   C1   DOUB  Y  N  17  
PVT  N29  C9   SING  N  N  18  
PVT  C6   C1   SING  Y  N  19  
PVT  C9   N10  DOUB  Y  N  20  
PVT  C9   N14  SING  Y  N  21  
PVT  N10  C11  SING  Y  N  22  
PVT  C1   C7   SING  N  N  23  
PVT  N14  C13  DOUB  Y  N  24  
PVT  C11  C12  DOUB  Y  N  25  
PVT  C13  C12  SING  Y  N  26  
PVT  C13  N8   SING  N  N  27  
PVT  C12  C15  SING  N  N  28  
PVT  F18  C15  SING  N  N  29  
PVT  C7   N8   SING  N  N  30  
PVT  F16  C15  SING  N  N  31  
PVT  C15  F17  SING  N  N  32  
PVT  C2   H1   SING  N  N  33  
PVT  C3   H2   SING  N  N  34  
PVT  C7   H3   SING  N  N  35  
PVT  C7   H4   SING  N  N  36  
PVT  C11  H5   SING  N  N  37  
PVT  C19  H6   SING  N  N  38  
PVT  C20  H7   SING  N  N  39  
PVT  C22  H8   SING  N  N  40  
PVT  N29  H9   SING  N  N  41  
PVT  C4   H10  SING  N  N  42  
PVT  C6   H11  SING  N  N  43  
PVT  N8   H12  SING  N  N  44  
PVT  C25  H13  SING  N  N  45  
PVT  C25  H14  SING  N  N  46  
PVT  N27  H15  SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PVT  InChI             InChI                 1.03   "InChI=1S/C19H15F3N6O/c20-19(21,22)14-10-25-18(28-17(14)24-9-11-2-1-5-23-8-11)26-13-3-4-15-12(6-13)7-16(29)27-15/h1-6,8,10H,7,9H2,(H,27,29)(H2,24,25,26,28)"  
PVT  InChIKey          InChI                 1.03   HOEAQQRLTIBABU-UHFFFAOYSA-N  
PVT  SMILES_CANONICAL  CACTVS                3.385  "FC(F)(F)c1cnc(Nc2ccc3NC(=O)Cc3c2)nc1NCc4cccnc4"  
PVT  SMILES            CACTVS                3.385  "FC(F)(F)c1cnc(Nc2ccc3NC(=O)Cc3c2)nc1NCc4cccnc4"  
PVT  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(cnc1)CNc2c(cnc(n2)Nc3ccc4c(c3)CC(=O)N4)C(F)(F)F"  
PVT  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(cnc1)CNc2c(cnc(n2)Nc3ccc4c(c3)CC(=O)N4)C(F)(F)F"  
#
_pdbx_chem_comp_identifier.comp_id          PVT
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "5-[[4-(pyridin-3-ylmethylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino]-1,3-dihydroindol-2-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PVT  "Create component"  2020-04-29  PDBE  
PVT  "Initial release"   2021-02-10  RCSB  
##
