data_RUT
#

_chem_comp.id                                   RUT
_chem_comp.name                                 RUTIN
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H30 O16"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-(3,4-DIHYDROXYPHENYL)-5,7-DIHYDROXY-4-OXO-4H-CHROMEN-3-YL 6-O-(6-DEOXY-ALPHA-L-MANNOPYRANOSYL)-BETA-D-GLUCOPYRANOSIDE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-01-06
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       610.517
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RUT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1RY8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RUT  O1    O1    O  0  1  Y  N  N  -3.202  -23.826  10.351  -0.939  -2.543   1.156  O1    RUT   1  
RUT  C1    C1    C  0  1  Y  N  N  -3.061  -22.523   9.816  -1.741  -1.546   0.745  C1    RUT   2  
RUT  C2    C2    C  0  1  Y  N  N  -1.856  -22.096   9.261  -1.984  -1.300  -0.573  C2    RUT   3  
RUT  O2    O2    O  0  1  N  N  N  -1.732  -20.822   8.727  -2.804  -0.277  -0.940  O2    RUT   4  
RUT  C3    C3    C  0  1  Y  N  N  -0.686  -23.063   9.219  -1.381  -2.122  -1.559  C3    RUT   5  
RUT  O3    O3    O  0  1  N  N  N   0.424  -22.721   8.705  -1.580  -1.935  -2.749  O3    RUT   6  
RUT  C4    C4    C  0  1  Y  N  N   0.112  -25.533   9.815   0.139  -4.063  -1.997  C4    RUT   7  
RUT  O4    O4    O  0  1  N  N  N   1.340  -25.209   9.254  -0.038  -3.902  -3.333  O4    RUT   8  
RUT  C5    C5    C  0  1  Y  N  N  -0.167  -26.791  10.353   0.952  -5.073  -1.518  C5    RUT   9  
RUT  C6    C6    C  0  1  Y  N  N  -1.516  -27.009  10.911   1.132  -5.235  -0.149  C6    RUT  10  
RUT  O5    O5    O  0  1  N  N  N  -1.832  -28.235  11.450   1.934  -6.231   0.310  O5    RUT  11  
RUT  C7    C7    C  0  1  Y  N  N  -2.608  -26.074  10.967   0.502  -4.392   0.752  C7    RUT  12  
RUT  C8    C8    C  0  1  Y  N  N  -2.180  -24.790  10.359  -0.318  -3.372   0.292  C8    RUT  13  
RUT  C9    C9    C  0  1  Y  N  N  -0.907  -24.430   9.786  -0.502  -3.206  -1.092  C9    RUT  14  
RUT  C10   C10   C  0  1  Y  N  N  -4.418  -21.833   9.957  -2.381  -0.686   1.758  C10   RUT  15  
RUT  C11   C11   C  0  1  Y  N  N  -5.519  -22.637   9.850  -1.624  -0.157   2.807  C11   RUT  16  
RUT  C12   C12   C  0  1  Y  N  N  -6.787  -22.093   9.903  -2.228   0.653   3.750  C12   RUT  17  
RUT  O6    O6    O  0  1  N  N  N  -7.861  -22.881   9.801  -1.493   1.173   4.769  O6    RUT  18  
RUT  C13   C13   C  0  1  Y  N  N  -6.975  -20.724  10.062  -3.591   0.931   3.660  C13   RUT  19  
RUT  O7    O7    O  0  1  N  N  N  -8.245  -20.237  10.088  -4.183   1.722   4.592  O7    RUT  20  
RUT  C14   C14   C  0  1  Y  N  N  -5.904  -19.887  10.178  -4.344   0.401   2.622  C14   RUT  21  
RUT  C15   C15   C  0  1  Y  N  N  -4.544  -20.333  10.141  -3.747  -0.403   1.674  C15   RUT  22  
RUT  C16   C16   C  0  1  N  N  S  -0.972  -19.828   9.514  -1.985   0.694  -1.595  C16   RUT  23  
RUT  C17   C17   C  0  1  N  N  R  -0.089  -19.026   8.520  -2.877   1.743  -2.262  C17   RUT  24  
RUT  O8    O8    O  0  1  N  N  N   0.812  -19.968   7.856  -3.746   1.105  -3.201  O8    RUT  25  
RUT  C18   C18   C  0  1  N  N  S   0.694  -17.915   9.405  -1.992   2.761  -2.990  C18   RUT  26  
RUT  O9    O9    O  0  1  N  N  N   1.526  -17.172   8.538  -2.801   3.827  -3.492  O9    RUT  27  
RUT  C19   C19   C  0  1  N  N  S  -0.320  -17.070  10.052  -0.965   3.315  -1.996  C19   RUT  28  
RUT  O10   O10   O  0  1  N  N  N   0.294  -16.061  10.835  -0.037   4.155  -2.686  O10   RUT  29  
RUT  C20   C20   C  0  1  N  N  R  -1.285  -17.917  11.012  -0.216   2.147  -1.350  C20   RUT  30  
RUT  C21   C21   C  0  1  N  N  N  -2.359  -17.086  11.702   0.836   2.691  -0.382  C21   RUT  31  
RUT  O11   O11   O  0  1  N  N  N  -1.924  -18.965  10.201  -1.135   1.321  -0.637  O11   RUT  32  
RUT  C22   C22   C  0  1  N  N  R  -4.472  -17.407  12.842   2.488   2.162   1.121  C22   RUT  33  
RUT  O12   O12   O  0  1  N  N  N  -3.199  -18.000  12.505   1.607   1.607   0.142  O12   RUT  34  
RUT  C23   C23   C  0  1  N  N  R  -5.343  -18.459  13.625   3.133   1.029   1.922  C23   RUT  35  
RUT  O13   O13   O  0  1  N  N  N  -6.595  -17.819  13.879   4.037   1.578   2.884  O13   RUT  36  
RUT  C24   C24   C  0  1  N  N  R  -4.746  -18.841  15.006   3.898   0.111   0.962  C24   RUT  37  
RUT  O14   O14   O  0  1  N  N  N  -5.575  -19.807  15.677   4.627  -0.865   1.710  O14   RUT  38  
RUT  C25   C25   C  0  1  N  N  R  -4.565  -17.540  15.893   4.870   0.964   0.140  C25   RUT  39  
RUT  O15   O15   O  0  1  N  N  N  -4.026  -17.879  17.155   5.487   0.154  -0.863  O15   RUT  40  
RUT  C26   C26   C  0  1  N  N  S  -3.632  -16.548  15.037   4.093   2.101  -0.528  C26   RUT  41  
RUT  C27   C27   C  0  1  N  N  N  -3.454  -15.202  15.870   5.048   2.938  -1.381  C27   RUT  42  
RUT  O16   O16   O  0  1  N  N  N  -4.272  -16.235  13.721   3.498   2.929   0.469  O16   RUT  43  
RUT  HO4   HO4   H  0  1  N  N  N   1.530  -24.353   8.888  -0.801  -4.442  -3.581  HO4   RUT  44  
RUT  H5    H5    H  0  1  N  N  N   0.624  -27.560  10.338   1.450  -5.737  -2.210  H5    RUT  45  
RUT  HO5   HO5   H  0  1  N  N  N  -2.700  -28.375  11.809   1.372  -7.008   0.432  HO5   RUT  46  
RUT  H7    H7    H  0  1  N  N  N  -3.597  -26.301  11.399   0.649  -4.528   1.813  H7    RUT  47  
RUT  H11   H11   H  0  1  N  N  N  -5.384  -23.724   9.721  -0.568  -0.373   2.875  H11   RUT  48  
RUT  HO6   HO6   H  0  1  N  N  N  -8.733  -22.507   9.838  -1.462   0.501   5.463  HO6   RUT  49  
RUT  HO7   HO7   H  0  1  N  N  N  -8.373  -19.302  10.197  -4.421   1.150   5.335  HO7   RUT  50  
RUT  H2    H2    H  0  1  N  N  N  -6.145  -18.818  10.306  -5.399   0.619   2.556  H2    RUT  51  
RUT  H1    H1    H  0  1  N  N  N  -3.709  -19.620  10.241  -4.336  -0.813   0.867  H1    RUT  52  
RUT  H16   H16   H  0  1  N  N  N  -0.317  -20.305  10.280  -1.375   0.202  -2.353  H16   RUT  53  
RUT  H17   H17   H  0  1  N  N  N  -0.668  -18.507   7.721  -3.471   2.252  -1.504  H17   RUT  54  
RUT  HO8   HO8   H  0  1  N  N  N   1.352  -19.477   7.248  -4.278   0.470  -2.702  HO8   RUT  55  
RUT  H18   H18   H  0  1  N  N  N   1.335  -18.372  10.195  -1.476   2.273  -3.817  H18   RUT  56  
RUT  HO9   HO9   H  0  1  N  N  N   1.985  -16.521   9.056  -3.438   3.431  -4.102  HO9   RUT  57  
RUT  H19   H19   H  0  1  N  N  N  -0.922  -16.618   9.230  -1.477   3.892  -1.226  H19   RUT  58  
RUT  H10   H10   H  0  1  N  N  N  -0.361  -15.515  11.253  -0.550   4.871  -3.083  H10   RUT  59  
RUT  H20   H20   H  0  1  N  N  N  -0.655  -18.341  11.829   0.274   1.558  -2.125  H20   RUT  60  
RUT  H211  1H21  H  0  0  N  N  N  -2.953  -16.470  10.987   0.342   3.213   0.436  H211  RUT  61  
RUT  H212  2H21  H  0  0  N  N  N  -1.936  -16.249  12.304   1.493   3.381  -0.910  H212  RUT  62  
RUT  H22   H22   H  0  1  N  N  N  -4.980  -17.093  11.901   1.922   2.805   1.794  H22   RUT  63  
RUT  H23   H23   H  0  1  N  N  N  -5.409  -19.390  13.015   2.359   0.457   2.434  H23   RUT  64  
RUT  H13   H13   H  0  1  N  N  N  -7.121  -18.454  14.352   3.515   2.152   3.461  H13   RUT  65  
RUT  H24   H24   H  0  1  N  N  N  -3.746  -19.308  14.845   3.195  -0.389   0.296  H24   RUT  66  
RUT  H14   H14   H  0  1  N  N  N  -5.210  -20.041  16.522   3.978  -1.368   2.221  H14   RUT  67  
RUT  H25   H25   H  0  1  N  N  N  -5.532  -17.033  16.120   5.635   1.380   0.795  H25   RUT  68  
RUT  H15   H15   H  0  1  N  N  N  -3.917  -17.099  17.687   6.089   0.729  -1.355  H15   RUT  69  
RUT  H26   H26   H  0  1  N  N  N  -2.645  -17.030  14.844   3.313   1.682  -1.164  H26   RUT  70  
RUT  H271  1H27  H  0  0  N  N  N  -3.065  -15.380  16.900   5.829   3.358  -0.746  H271  RUT  71  
RUT  H272  2H27  H  0  0  N  N  N  -2.807  -14.514  15.277   5.502   2.307  -2.145  H272  RUT  72  
RUT  H273  3H27  H  0  0  N  N  N  -4.427  -14.740  16.157   4.495   3.747  -1.859  H273  RUT  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RUT  O1   C1    SING  Y  N   1  
RUT  O1   C8    SING  Y  N   2  
RUT  C1   C2    DOUB  Y  N   3  
RUT  C1   C10   SING  Y  N   4  
RUT  C2   O2    SING  N  N   5  
RUT  C2   C3    SING  Y  N   6  
RUT  O2   C16   SING  N  N   7  
RUT  C3   O3    DOUB  N  N   8  
RUT  C3   C9    SING  Y  N   9  
RUT  C4   O4    SING  N  N  10  
RUT  C4   C5    DOUB  Y  N  11  
RUT  C4   C9    SING  Y  N  12  
RUT  O4   HO4   SING  N  N  13  
RUT  C5   C6    SING  Y  N  14  
RUT  C5   H5    SING  N  N  15  
RUT  C6   O5    SING  N  N  16  
RUT  C6   C7    DOUB  Y  N  17  
RUT  O5   HO5   SING  N  N  18  
RUT  C7   C8    SING  Y  N  19  
RUT  C7   H7    SING  N  N  20  
RUT  C8   C9    DOUB  Y  N  21  
RUT  C10  C11   DOUB  Y  N  22  
RUT  C10  C15   SING  Y  N  23  
RUT  C11  C12   SING  Y  N  24  
RUT  C11  H11   SING  N  N  25  
RUT  C12  O6    SING  N  N  26  
RUT  C12  C13   DOUB  Y  N  27  
RUT  O6   HO6   SING  N  N  28  
RUT  C13  O7    SING  N  N  29  
RUT  C13  C14   SING  Y  N  30  
RUT  O7   HO7   SING  N  N  31  
RUT  C14  C15   DOUB  Y  N  32  
RUT  C14  H2    SING  N  N  33  
RUT  C15  H1    SING  N  N  34  
RUT  C16  C17   SING  N  N  35  
RUT  C16  O11   SING  N  N  36  
RUT  C16  H16   SING  N  N  37  
RUT  C17  O8    SING  N  N  38  
RUT  C17  C18   SING  N  N  39  
RUT  C17  H17   SING  N  N  40  
RUT  O8   HO8   SING  N  N  41  
RUT  C18  O9    SING  N  N  42  
RUT  C18  C19   SING  N  N  43  
RUT  C18  H18   SING  N  N  44  
RUT  O9   HO9   SING  N  N  45  
RUT  C19  O10   SING  N  N  46  
RUT  C19  C20   SING  N  N  47  
RUT  C19  H19   SING  N  N  48  
RUT  O10  H10   SING  N  N  49  
RUT  C20  C21   SING  N  N  50  
RUT  C20  O11   SING  N  N  51  
RUT  C20  H20   SING  N  N  52  
RUT  C21  O12   SING  N  N  53  
RUT  C21  H211  SING  N  N  54  
RUT  C21  H212  SING  N  N  55  
RUT  C22  O12   SING  N  N  56  
RUT  C22  C23   SING  N  N  57  
RUT  C22  O16   SING  N  N  58  
RUT  C22  H22   SING  N  N  59  
RUT  C23  O13   SING  N  N  60  
RUT  C23  C24   SING  N  N  61  
RUT  C23  H23   SING  N  N  62  
RUT  O13  H13   SING  N  N  63  
RUT  C24  O14   SING  N  N  64  
RUT  C24  C25   SING  N  N  65  
RUT  C24  H24   SING  N  N  66  
RUT  O14  H14   SING  N  N  67  
RUT  C25  O15   SING  N  N  68  
RUT  C25  C26   SING  N  N  69  
RUT  C25  H25   SING  N  N  70  
RUT  O15  H15   SING  N  N  71  
RUT  C26  C27   SING  N  N  72  
RUT  C26  O16   SING  N  N  73  
RUT  C26  H26   SING  N  N  74  
RUT  C27  H271  SING  N  N  75  
RUT  C27  H272  SING  N  N  76  
RUT  C27  H273  SING  N  N  77  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RUT  SMILES            ACDLabs               10.04  "O=C3C(OC1OC(C(O)C(O)C1O)COC2OC(C)C(O)C(O)C2O)=C(Oc4cc(O)cc(O)c34)c5ccc(O)c(O)c5"  
RUT  SMILES_CANONICAL  CACTVS                3.341  "C[C@@H]1O[C@@H](OC[C@H]2O[C@@H](OC3=C(Oc4cc(O)cc(O)c4C3=O)c5ccc(O)c(O)c5)[C@H](O)[C@@H](O)[C@@H]2O)[C@H](O)[C@H](O)[C@H]1O"  
RUT  SMILES            CACTVS                3.341  "C[CH]1O[CH](OC[CH]2O[CH](OC3=C(Oc4cc(O)cc(O)c4C3=O)c5ccc(O)c(O)c5)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O"  
RUT  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)OC3=C(Oc4cc(cc(c4C3=O)O)O)c5ccc(c(c5)O)O)O)O)O)O)O)O"  
RUT  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(C(C(C(O1)OCC2C(C(C(C(O2)OC3=C(Oc4cc(cc(c4C3=O)O)O)c5ccc(c(c5)O)O)O)O)O)O)O)O"  
RUT  InChI             InChI                 1.03   "InChI=1S/C27H30O16/c1-8-17(32)20(35)22(37)26(40-8)39-7-15-18(33)21(36)23(38)27(42-15)43-25-19(34)16-13(31)5-10(28)6-14(16)41-24(25)9-2-3-11(29)12(30)4-9/h2-6,8,15,17-18,20-23,26-33,35-38H,7H2,1H3/t8-,15+,17-,18+,20+,21-,22+,23+,26+,27-/m0/s1"  
RUT  InChIKey          InChI                 1.03   IKGXIBQEEMLURG-NVPNHPEKSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RUT  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4-oxo-4H-chromen-3-yl 6-O-(6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranoside"  
RUT  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-[[(2R,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyl-oxan-2-yl]oxymethyl]oxan-2-yl]oxy-chromen-4-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RUT  "Create component"      2004-01-06  RCSB  
RUT  "Modify aromatic_flag"  2011-06-04  RCSB  
RUT  "Modify descriptor"     2011-06-04  RCSB  
RUT  "Modify synonyms"       2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     RUT
_pdbx_chem_comp_synonyms.name        "2-(3,4-DIHYDROXYPHENYL)-5,7-DIHYDROXY-4-OXO-4H-CHROMEN-3-YL 6-O-(6-DEOXY-ALPHA-L-MANNOPYRANOSYL)-BETA-D-GLUCOPYRANOSIDE"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
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