data_YNT
# 
_chem_comp.id                                    YNT 
_chem_comp.name                                  Radafaxine 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H18 Cl N O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(2~{S},3~{S})-2-(3-chlorophenyl)-3,5,5-trimethyl-morpholin-2-ol" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-07 
_chem_comp.pdbx_modified_date                    2024-11-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        255.741 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YNT 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8XB2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YNT C10  C1  C  0 1 N N N N N N 130.968 137.861 139.911 4.865  -0.493 0.192  C10  YNT 1  
YNT C13  C2  C  0 1 Y N N N N N 132.584 144.330 140.211 -1.830 -0.400 0.237  C13  YNT 2  
YNT C15  C3  C  0 1 Y N N N N N 132.920 145.430 140.938 -3.098 0.097  -0.006 C15  YNT 3  
YNT C17  C4  C  0 1 Y N N N N N 133.241 145.320 142.268 -3.266 1.431  -0.332 C17  YNT 4  
YNT C05  C5  C  0 1 N N N N N N 131.588 139.129 140.441 3.453  0.021  -0.091 C05  YNT 5  
YNT C06  C6  C  0 1 N N S N N N 133.365 140.890 140.070 1.259  -0.614 -0.890 C06  YNT 6  
YNT C07  C7  C  0 1 N N S N N N 132.196 141.849 140.121 0.649  -0.106 0.420  C07  YNT 7  
YNT C08  C8  C  0 1 N N N N N N 130.572 140.167 140.361 2.821  0.523  1.210  C08  YNT 8  
YNT C09  C9  C  0 1 N N N N N N 131.997 138.925 141.875 3.520  1.168  -1.102 C09  YNT 9  
YNT C11  C10 C  0 1 N N N N N N 134.361 141.355 139.123 0.423  -1.779 -1.426 C11  YNT 10 
YNT C12  C11 C  0 1 Y N N N N N 132.582 143.120 140.846 -0.732 0.435  0.155  C12  YNT 11 
YNT C14  C12 C  0 1 Y N N N N N 132.886 143.001 142.174 -0.901 1.768  -0.172 C14  YNT 12 
YNT C16  C13 C  0 1 Y N N N N N 133.223 144.107 142.896 -2.168 2.266  -0.414 C16  YNT 13 
YNT N04  N1  N  0 1 N N N N N N 132.838 139.515 139.577 2.634  -1.070 -0.640 N04  YNT 14 
YNT O02  O1  O  0 1 N N N N N N 131.117 141.326 140.883 1.475  0.933  0.953  O02  YNT 15 
YNT O03  O2  O  0 1 N N N N N N 131.696 142.165 138.880 0.568  -1.182 1.357  O03  YNT 16 
YNT CL01 CL1 CL 0 0 N N N N N N 132.944 147.029 140.183 -4.477 -0.953 0.097  CL01 YNT 17 
YNT H103 H1  H  0 0 N N N N N N 130.092 137.597 140.522 5.472  0.316  0.600  H103 YNT 18 
YNT H102 H2  H  0 0 N N N N N N 130.654 138.015 138.868 4.817  -1.310 0.913  H102 YNT 19 
YNT H101 H3  H  0 0 N N N N N N 131.705 137.046 139.956 5.314  -0.852 -0.734 H101 YNT 20 
YNT H131 H4  H  0 0 N N N N N N 132.327 144.411 139.165 -1.698 -1.441 0.496  H131 YNT 21 
YNT H171 H5  H  0 0 N N N N N N 133.511 146.205 142.826 -4.256 1.819  -0.522 H171 YNT 22 
YNT H061 H6  H  0 0 N N N N N N 133.802 140.776 141.073 1.271  0.193  -1.623 H061 YNT 23 
YNT H081 H7  H  0 0 N N N N N N 130.282 140.328 139.312 2.823  -0.279 1.948  H081 YNT 24 
YNT H082 H8  H  0 0 N N N N N N 129.688 139.872 140.945 3.393  1.370  1.589  H082 YNT 25 
YNT H093 H9  H  0 0 N N N N N N 131.115 138.655 142.474 3.968  0.809  -2.029 H093 YNT 26 
YNT H091 H10 H  0 0 N N N N N N 132.741 138.117 141.933 2.513  1.533  -1.304 H091 YNT 27 
YNT H092 H11 H  0 0 N N N N N N 132.435 139.855 142.267 4.126  1.977  -0.694 H092 YNT 28 
YNT H112 H12 H  0 0 N N N N N N 134.751 142.330 139.450 -0.597 -1.440 -1.607 H112 YNT 29 
YNT H111 H13 H  0 0 N N N N N N 135.185 140.629 139.072 0.858  -2.140 -2.358 H111 YNT 30 
YNT H113 H14 H  0 0 N N N N N N 133.901 141.459 138.129 0.413  -2.586 -0.693 H113 YNT 31 
YNT H141 H15 H  0 0 N N N N N N 132.859 142.032 142.650 -0.043 2.421  -0.236 H141 YNT 32 
YNT H161 H16 H  0 0 N N N N N N 133.471 144.026 143.944 -2.299 3.307  -0.669 H161 YNT 33 
YNT H1   H17 H  0 1 N N N N N N 132.577 139.578 138.614 2.643  -1.872 -0.027 H1   YNT 34 
YNT H031 H19 H  0 0 N N N N N N 130.968 142.767 138.976 0.190  -0.931 2.211  H031 YNT 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YNT O03  C07  SING N N 1  
YNT C11  C06  SING N N 2  
YNT N04  C06  SING N N 3  
YNT N04  C05  SING N N 4  
YNT C10  C05  SING N N 5  
YNT C06  C07  SING N N 6  
YNT C07  C12  SING N N 7  
YNT C07  O02  SING N N 8  
YNT CL01 C15  SING N N 9  
YNT C13  C12  DOUB Y N 10 
YNT C13  C15  SING Y N 11 
YNT C08  C05  SING N N 12 
YNT C08  O02  SING N N 13 
YNT C05  C09  SING N N 14 
YNT C12  C14  SING Y N 15 
YNT C15  C17  DOUB Y N 16 
YNT C14  C16  DOUB Y N 17 
YNT C17  C16  SING Y N 18 
YNT C10  H103 SING N N 19 
YNT C10  H102 SING N N 20 
YNT C10  H101 SING N N 21 
YNT C13  H131 SING N N 22 
YNT C17  H171 SING N N 23 
YNT C06  H061 SING N N 24 
YNT C08  H081 SING N N 25 
YNT C08  H082 SING N N 26 
YNT C09  H093 SING N N 27 
YNT C09  H091 SING N N 28 
YNT C09  H092 SING N N 29 
YNT C11  H112 SING N N 30 
YNT C11  H111 SING N N 31 
YNT C11  H113 SING N N 32 
YNT C14  H141 SING N N 33 
YNT C16  H161 SING N N 34 
YNT N04  H1   SING N N 35 
YNT O03  H031 SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YNT InChI            InChI                1.06  "InChI=1S/C13H18ClNO2/c1-9-13(16,17-8-12(2,3)15-9)10-5-4-6-11(14)7-10/h4-7,9,15-16H,8H2,1-3H3/t9-,13+/m0/s1" 
YNT InChIKey         InChI                1.06  RCOBKSKAZMVBHT-TVQRCGJNSA-N                                                                                  
YNT SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1NC(C)(C)CO[C@@]1(O)c2cccc(Cl)c2"                                                                    
YNT SMILES           CACTVS               3.385 "C[CH]1NC(C)(C)CO[C]1(O)c2cccc(Cl)c2"                                                                        
YNT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@@](OCC(N1)(C)C)(c2cccc(c2)Cl)O"                                                                   
YNT SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C(OCC(N1)(C)C)(c2cccc(c2)Cl)O"                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           YNT 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{S})-2-(3-chlorophenyl)-3,5,5-trimethyl-morpholin-2-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YNT "Create component"   2023-12-07 PDBJ 
YNT "Modify coordinates" 2024-05-19 PDBJ 
YNT "Initial release"    2024-07-10 RCSB 
YNT "Modify synonyms"    2024-11-11 PDBJ 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      YNT 
_pdbx_chem_comp_synonyms.name         "(2~{S},3~{S})-2-(3-chlorophenyl)-3,5,5-trimethyl-morpholin-2-ol" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
