data_4LU
#

_chem_comp.id                                   4LU
_chem_comp.name                                 
;1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y
l)-D-ribitol
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H30 N4 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "prenylated-FMN iminium form"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2015-04-14
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       525.469
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    4LU
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4ZA7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4LU  C9     C1   C  0  1  Y  N  N  21.490   9.039  21.787  -1.760   1.688  -1.596  C9     4LU   1  
4LU  C8     C2   C  0  1  Y  N  N  21.079   9.270  20.440  -2.613   2.769  -1.530  C8     4LU   2  
4LU  C7     C3   C  0  1  Y  N  N  20.619  10.505  19.992  -3.722   2.753  -0.691  C7     4LU   3  
4LU  C10    C4   C  0  1  N  N  N  21.828  10.834  24.901  -1.760  -1.789  -0.571  C10    4LU   4  
4LU  C6     C5   C  0  1  Y  N  N  20.431  11.588  20.915  -3.944   1.691   0.160  C6     4LU   5  
4LU  N3     N1   N  0  1  N  N  N  22.305  12.879  26.594  -2.864  -4.189   0.159  N3     4LU   6  
4LU  C2     C6   C  0  1  N  N  N  22.638  11.649  27.057  -1.722  -4.146  -0.545  C2     4LU   7  
4LU  C13    C7   C  0  1  N  N  N  21.370  13.865  20.553  -4.910   3.075   2.021  C13    4LU   8  
4LU  C5     C8   C  0  1  N  N  N  20.018  12.995  20.668  -4.967   1.741   1.262  C5     4LU   9  
4LU  C1     C9   C  0  1  N  N  N  19.954  13.367  23.063  -4.211  -0.622   1.711  C1     4LU  10  
4LU  O2     O1   O  0  1  N  N  N  23.185  11.459  28.075  -1.159  -5.183  -0.837  O2     4LU  11  
4LU  N1     N2   N  0  1  N  N  N  22.354  10.591  26.144  -1.184  -2.974  -0.939  N1     4LU  12  
4LU  C4     C10  C  0  1  N  N  N  21.706  13.150  25.376  -3.503  -3.053   0.511  C4     4LU  13  
4LU  O4     O2   O  0  1  N  N  N  21.474  14.355  25.122  -4.587  -3.133   1.061  O4     4LU  14  
4LU  C4A    C11  C  0  1  N  N  N  21.412  12.121  24.620  -2.911  -1.805   0.211  C4A    4LU  15  
4LU  N5     N3   N  1  1  N  N  N  20.583  12.266  23.253  -3.431  -0.623   0.682  N5     4LU  16  
4LU  C3     C12  C  0  1  N  N  N  19.352  13.551  21.831  -4.706   0.657   2.312  C3     4LU  17  
4LU  C12    C13  C  0  1  N  N  N  19.255  13.356  19.407  -6.373   1.537   0.692  C12    4LU  18  
4LU  C5A    C14  C  0  1  Y  N  N  20.816  11.260  22.314  -3.146   0.551   0.017  C5A    4LU  19  
4LU  C7M    C15  C  0  1  N  N  N  20.353  10.741  18.523  -4.677   3.911  -0.861  C7M    4LU  20  
4LU  C8M    C16  C  0  1  N  N  N  21.128   8.134  19.549  -2.347   3.989  -2.376  C8M    4LU  21  
4LU  C9A    C17  C  0  1  Y  N  N  21.305  10.068  22.707  -2.046   0.555  -0.856  C9A    4LU  22  
4LU  N10    N4   N  0  1  N  N  N  21.671   9.798  24.084  -1.242  -0.582  -0.958  N10    4LU  23  
4LU  "C1'"  C18  C  0  1  N  N  N  21.712   8.450  24.624   0.120  -0.492  -1.489  "C1'"  4LU  24  
4LU  "C2'"  C19  C  0  1  N  N  S  23.217   7.997  24.911   1.098  -0.225  -0.343  "C2'"  4LU  25  
4LU  "O2'"  O3   O  0  1  N  N  N  23.938   8.077  23.628   0.755   1.005   0.299  "O2'"  4LU  26  
4LU  "C3'"  C20  C  0  1  N  N  S  23.178   6.540  25.305   2.520  -0.132  -0.898  "C3'"  4LU  27  
4LU  "O3'"  O4   O  0  1  N  N  N  22.500   6.514  26.582   2.863  -1.362  -1.540  "O3'"  4LU  28  
4LU  "C4'"  C21  C  0  1  N  N  R  24.555   5.969  25.478   3.498   0.135   0.248  "C4'"  4LU  29  
4LU  "O4'"  O5   O  0  1  N  N  N  24.448   4.694  26.147   3.155   1.365   0.890  "O4'"  4LU  30  
4LU  "C5'"  C22  C  0  1  N  N  N  25.521   6.871  26.200   4.921   0.229  -0.307  "C5'"  4LU  31  
4LU  "O5'"  O6   O  0  1  N  N  N  26.879   6.281  26.117   5.846   0.362   0.774  "O5'"  4LU  32  
4LU  P      P1   P  0  1  N  N  N  27.622   5.795  27.439   7.437   0.487   0.557  P      4LU  33  
4LU  O2P    O7   O  0  1  N  N  N  29.051   5.588  26.962   7.722   1.614  -0.358  O2P    4LU  34  
4LU  O3P    O8   O  0  1  N  N  N  26.927   4.467  27.761   8.153   0.752   1.975  O3P    4LU  35  
4LU  O1P    O9   O  0  1  N  N  N  27.406   6.861  28.513   8.000  -0.880  -0.082  O1P    4LU  36  
4LU  H1     H1   H  0  1  N  N  N  21.930   8.098  22.083  -0.900   1.740  -2.246  H1     4LU  37  
4LU  H2     H2   H  0  1  N  N  N  22.510  13.659  27.185  -3.236  -5.046   0.420  H2     4LU  38  
4LU  H3     H3   H  0  1  N  N  N  22.005  13.675  21.431  -5.238   3.881   1.365  H3     4LU  39  
4LU  H4     H4   H  0  1  N  N  N  21.913  13.580  19.640  -5.564   3.026   2.892  H4     4LU  40  
4LU  H5     H5   H  0  1  N  N  N  21.115  14.934  20.510  -3.886   3.265   2.346  H5     4LU  41  
4LU  H6     H6   H  0  1  N  N  N  19.896  14.121  23.834  -4.483  -1.551   2.189  H6     4LU  42  
4LU  H9     H9   H  0  1  N  N  N  19.258  14.635  21.669  -3.964   1.031   3.023  H9     4LU  43  
4LU  H10    H10  H  0  1  N  N  N  18.350  13.100  21.884  -5.635   0.464   2.853  H10    4LU  44  
4LU  H11    H11  H  0  1  N  N  N  18.301  12.808  19.385  -6.610   2.353   0.010  H11    4LU  45  
4LU  H12    H12  H  0  1  N  N  N  19.057  14.438  19.396  -6.413   0.590   0.153  H12    4LU  46  
4LU  H13    H13  H  0  1  N  N  N  19.854  13.084  18.526  -7.096   1.522   1.507  H13    4LU  47  
4LU  H14    H14  H  0  1  N  N  N  19.305  10.497  18.296  -5.030   3.943  -1.892  H14    4LU  48  
4LU  H15    H15  H  0  1  N  N  N  20.544  11.797  18.281  -5.526   3.782  -0.190  H15    4LU  49  
4LU  H16    H16  H  0  1  N  N  N  21.017  10.101  17.923  -4.164   4.843  -0.623  H16    4LU  50  
4LU  H17    H17  H  0  1  N  N  N  22.111   8.095  19.057  -2.921   3.922  -3.300  H17    4LU  51  
4LU  H18    H18  H  0  1  N  N  N  20.970   7.210  20.124  -2.644   4.883  -1.828  H18    4LU  52  
4LU  H19    H19  H  0  1  N  N  N  20.340   8.231  18.787  -1.284   4.043  -2.612  H19    4LU  53  
4LU  H20    H20  H  0  1  N  N  N  21.142   8.421  25.564   0.382  -1.430  -1.979  H20    4LU  54  
4LU  H21    H21  H  0  1  N  N  N  21.259   7.758  23.899   0.176   0.322  -2.211  H21    4LU  55  
4LU  H22    H22  H  0  1  N  N  N  23.672   8.624  25.692   1.042  -1.040   0.379  H22    4LU  56  
4LU  H23    H23  H  0  1  N  N  N  24.842   7.814  23.755   0.783   1.774  -0.286  H23    4LU  57  
4LU  H24    H24  H  0  1  N  N  N  22.621   5.962  24.553   2.576   0.683  -1.620  H24    4LU  58  
4LU  H25    H25  H  0  1  N  N  N  22.440   5.618  26.891   2.835  -2.131  -0.956  H25    4LU  59  
4LU  H26    H26  H  0  1  N  N  N  24.964   5.792  24.472   3.443  -0.679   0.970  H26    4LU  60  
4LU  H27    H27  H  0  1  N  N  N  25.315   4.323  26.262   3.184   2.135   0.306  H27    4LU  61  
4LU  H28    H28  H  0  1  N  N  N  25.521   7.865  25.730   5.151  -0.674  -0.873  H28    4LU  62  
4LU  H29    H29  H  0  1  N  N  N  25.222   6.964  27.255   5.000   1.097  -0.961  H29    4LU  63  
4LU  H30    H30  H  0  1  N  N  N  27.527   3.748  27.601   9.114   0.837   1.920  H30    4LU  64  
4LU  H31    H31  H  0  1  N  N  N  28.239   7.259  28.737   7.847  -1.662   0.466  H31    4LU  65  
4LU  H7     H7   H  0  1  N  N  N  22.543   9.648  26.417  -0.389  -3.003  -1.493  H7     4LU  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4LU  C7M    C7     SING  N  N   1  
4LU  C12    C5     SING  N  N   2  
4LU  C8M    C8     SING  N  N   3  
4LU  C7     C8     DOUB  Y  N   4  
4LU  C7     C6     SING  Y  N   5  
4LU  C8     C9     SING  Y  N   6  
4LU  C13    C5     SING  N  N   7  
4LU  C5     C6     SING  N  N   8  
4LU  C5     C3     SING  N  N   9  
4LU  C6     C5A    DOUB  Y  N  10  
4LU  C9     C9A    DOUB  Y  N  11  
4LU  C3     C1     SING  N  N  12  
4LU  C5A    C9A    SING  Y  N  13  
4LU  C5A    N5     SING  N  N  14  
4LU  C9A    N10    SING  N  N  15  
4LU  C1     N5     DOUB  N  N  16  
4LU  N5     C4A    SING  N  N  17  
4LU  "O2'"  "C2'"  SING  N  N  18  
4LU  N10    "C1'"  SING  N  N  19  
4LU  N10    C10    SING  N  N  20  
4LU  C4A    C10    DOUB  N  N  21  
4LU  C4A    C4     SING  N  N  22  
4LU  "C1'"  "C2'"  SING  N  N  23  
4LU  C10    N1     SING  N  N  24  
4LU  "C2'"  "C3'"  SING  N  N  25  
4LU  O4     C4     DOUB  N  N  26  
4LU  "C3'"  "C4'"  SING  N  N  27  
4LU  "C3'"  "O3'"  SING  N  N  28  
4LU  C4     N3     SING  N  N  29  
4LU  "C4'"  "O4'"  SING  N  N  30  
4LU  "C4'"  "C5'"  SING  N  N  31  
4LU  "O5'"  "C5'"  SING  N  N  32  
4LU  "O5'"  P      SING  N  N  33  
4LU  N1     C2     SING  N  N  34  
4LU  N3     C2     SING  N  N  35  
4LU  O2P    P      DOUB  N  N  36  
4LU  C2     O2     DOUB  N  N  37  
4LU  P      O3P    SING  N  N  38  
4LU  P      O1P    SING  N  N  39  
4LU  C9     H1     SING  N  N  40  
4LU  N3     H2     SING  N  N  41  
4LU  C13    H3     SING  N  N  42  
4LU  C13    H4     SING  N  N  43  
4LU  C13    H5     SING  N  N  44  
4LU  C1     H6     SING  N  N  45  
4LU  C3     H9     SING  N  N  46  
4LU  C3     H10    SING  N  N  47  
4LU  C12    H11    SING  N  N  48  
4LU  C12    H12    SING  N  N  49  
4LU  C12    H13    SING  N  N  50  
4LU  C7M    H14    SING  N  N  51  
4LU  C7M    H15    SING  N  N  52  
4LU  C7M    H16    SING  N  N  53  
4LU  C8M    H17    SING  N  N  54  
4LU  C8M    H18    SING  N  N  55  
4LU  C8M    H19    SING  N  N  56  
4LU  "C1'"  H20    SING  N  N  57  
4LU  "C1'"  H21    SING  N  N  58  
4LU  "C2'"  H22    SING  N  N  59  
4LU  "O2'"  H23    SING  N  N  60  
4LU  "C3'"  H24    SING  N  N  61  
4LU  "O3'"  H25    SING  N  N  62  
4LU  "C4'"  H26    SING  N  N  63  
4LU  "O4'"  H27    SING  N  N  64  
4LU  "C5'"  H28    SING  N  N  65  
4LU  "C5'"  H29    SING  N  N  66  
4LU  O3P    H30    SING  N  N  67  
4LU  O1P    H31    SING  N  N  68  
4LU  N1     H7     SING  N  N  69  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4LU  SMILES            ACDLabs               12.01  "c1c3c4c(c(c1C)C)C(C)(CC=[N+]4C2=C(NC(NC2=O)=O)N3CC(C(C(O)COP(O)(O)=O)O)O)C"  
4LU  InChI             InChI                 1.03   "InChI=1S/C22H29N4O9P/c1-10-7-12-16-15(11(10)2)22(3,4)5-6-25(16)17-19(23-21(31)24-20(17)30)26(12)8-13(27)18(29)14(28)9-35-36(32,33)34/h6-7,13-14,18,27-29H,5,8-9H2,1-4H3,(H3-,23,24,30,31,32,33,34)/p+1/t13-,14+,18-/m0/s1"  
4LU  InChIKey          InChI                 1.03   KOUJZPGFPGLHCZ-IYOUNJFTSA-O  
4LU  SMILES_CANONICAL  CACTVS                3.385  "Cc1cc2N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)C3=C(C(=O)NC(=O)N3)[N+]4=CCC(C)(C)c(c1C)c24"  
4LU  SMILES            CACTVS                3.385  "Cc1cc2N(C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)C3=C(C(=O)NC(=O)N3)[N+]4=CCC(C)(C)c(c1C)c24"  
4LU  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "Cc1cc2c3c(c1C)C(CC=[N+]3C4=C(N2C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O)NC(=O)NC4=O)(C)C"  
4LU  SMILES            "OpenEye OEToolkits"  1.9.2  "Cc1cc2c3c(c1C)C(CC=[N+]3C4=C(N2CC(C(C(COP(=O)(O)O)O)O)O)NC(=O)NC4=O)(C)C"  
#
_pdbx_chem_comp_identifier.comp_id          4LU
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-yl)-D-ribitol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4LU  "Create component"  2015-04-14  EBI   
4LU  "Initial release"   2015-06-17  RCSB  
4LU  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     4LU
_pdbx_chem_comp_synonyms.name        "prenylated-FMN iminium form"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
