data_OFU
# 
_chem_comp.id                                    OFU 
_chem_comp.name                                  "(4S)-2-azanyl-4-methyl-4-[3-[4-[(1S)-1-[(2S)-1-methylpyrrolidin-1-ium-2-yl]ethoxy]pyrimidin-2-yl]-1,2,4-oxadiazol-5-yl]-6,7-dihydro-5H-1-benzothiophene-3-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H28 N7 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2022-09-06 
_chem_comp.pdbx_modified_date                    2023-06-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        466.579 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OFU 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AZZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OFU C4  C1  C 0 1 N N N 27.765 1.392  2.364 -5.617 0.315  -2.172 C4  OFU 1  
OFU C5  C2  C 0 1 N N N 27.253 0.466  1.301 -6.845 1.238  -2.000 C5  OFU 2  
OFU C6  C3  C 0 1 N N N 27.921 -0.825 1.638 -7.876 0.317  -1.300 C6  OFU 3  
OFU C7  C4  C 0 1 N N S 26.470 0.766  4.454 -4.603 -0.797 -0.159 C7  OFU 4  
OFU N12 N1  N 0 1 Y N N 24.165 -0.174 5.534 -2.200 0.117  0.594  N12 OFU 5  
OFU C13 C5  C 0 1 Y N N 25.304 -0.643 6.038 -3.254 0.887  0.830  C13 OFU 6  
OFU C15 C6  C 0 1 N N N 15.861 1.804  5.075 5.997  -1.849 -1.209 C15 OFU 7  
OFU C17 C7  C 0 1 N N N 17.874 1.819  6.538 3.996  -2.722 -0.003 C17 OFU 8  
OFU C20 C8  C 0 1 Y N N 17.370 -0.239 5.150 4.343  -0.269 -0.139 C20 OFU 9  
OFU C21 C9  C 0 1 Y N N 17.516 -1.543 4.545 3.974  1.134  -0.074 C21 OFU 10 
OFU C22 C10 C 0 1 Y N N 16.559 -1.798 3.572 4.767  1.938  -0.845 C22 OFU 11 
OFU C24 C11 C 0 1 N N N 18.116 -0.516 7.528 4.061  -1.353 2.088  C24 OFU 12 
OFU C28 C12 C 0 1 Y N N 21.758 -0.071 5.616 0.174  -0.376 0.661  C28 OFU 13 
OFU C1  C13 C 0 1 N N N 29.046 -1.628 3.718 -7.732 -1.734 -0.018 C1  OFU 14 
OFU C11 C14 C 0 1 Y N N 23.035 -0.602 6.119 -0.983 0.512  0.942  C11 OFU 15 
OFU C14 C15 C 0 1 Y N N 25.376 -1.551 7.094 -3.065 2.122  1.452  C14 OFU 16 
OFU C16 C16 C 0 1 N N N 16.376 2.077  6.473 5.519  -2.819 -0.124 C16 OFU 17 
OFU C18 C17 C 0 1 N N S 18.236 0.336  6.253 3.626  -1.374 0.622  C18 OFU 18 
OFU C19 C18 C 0 1 Y N N 16.318 0.443  4.637 5.388  -0.485 -0.945 C19 OFU 19 
OFU C25 C19 C 0 1 Y N N 19.675 0.295  5.798 2.137  -1.167 0.531  C25 OFU 20 
OFU C3  C20 C 0 1 N N S 27.754 0.550  3.646 -5.796 -0.793 -1.118 C3  OFU 21 
OFU C31 C21 C 0 1 N N N 18.535 -2.502 4.845 2.888  1.626  0.718  C31 OFU 22 
OFU C33 C22 C 0 1 N N N 26.401 2.126  5.109 -4.808 -1.877 0.905  C33 OFU 23 
OFU C9  C23 C 0 1 Y N N 24.148 -1.945 7.588 -1.780 2.497  1.799  C9  OFU 24 
OFU N10 N2  N 0 1 Y N N 22.970 -1.502 7.124 -0.774 1.679  1.533  N10 OFU 25 
OFU N2  N3  N 1 1 N N N 27.896 -0.877 3.137 -7.038 -0.489 -0.375 N2  OFU 26 
OFU N27 N4  N 0 1 Y N N 21.549 0.749  4.622 0.131  -1.547 0.083  N27 OFU 27 
OFU N29 N5  N 0 1 Y N N 20.640 -0.338 6.360 1.470  -0.121 0.951  N29 OFU 28 
OFU N30 N6  N 0 1 N N N 16.424 -2.891 2.799 4.624  3.310  -0.956 N30 OFU 29 
OFU N32 N7  N 0 1 N N N 19.334 -3.302 5.049 2.026  2.017  1.347  N32 OFU 30 
OFU O26 O1  O 0 1 Y N N 20.129 1.013  4.704 1.248  -2.013 0.002  O26 OFU 31 
OFU O8  O2  O 0 1 N N N 26.493 -0.253 5.496 -4.496 0.480  0.473  O8  OFU 32 
OFU S23 S1  S 0 1 Y N N 15.489 -0.449 3.393 5.954  1.020  -1.649 S23 OFU 33 
OFU H40 H1  H 0 1 N N N 28.786 1.728  2.128 -5.605 -0.114 -3.174 H40 OFU 34 
OFU H39 H2  H 0 1 N N N 27.106 2.267  2.468 -4.697 0.869  -1.987 H39 OFU 35 
OFU H42 H3  H 0 1 N N N 27.545 0.813  0.299 -6.600 2.092  -1.368 H42 OFU 36 
OFU H41 H4  H 0 1 N N N 26.158 0.371  1.352 -7.219 1.569  -2.969 H41 OFU 37 
OFU H44 H5  H 0 1 N N N 27.367 -1.673 1.210 -8.604 0.906  -0.744 H44 OFU 38 
OFU H43 H6  H 0 1 N N N 28.956 -0.837 1.265 -8.373 -0.325 -2.027 H43 OFU 39 
OFU H45 H7  H 0 1 N N N 25.598 0.626  3.799 -3.690 -1.005 -0.716 H45 OFU 40 
OFU H49 H8  H 0 1 N N N 16.254 2.564  4.383 7.084  -1.776 -1.180 H49 OFU 41 
OFU H48 H9  H 0 1 N N N 14.762 1.841  5.074 5.680  -2.210 -2.187 H48 OFU 42 
OFU H53 H10 H 0 1 N N N 18.234 2.083  7.543 3.546  -2.800 -0.993 H53 OFU 43 
OFU H52 H11 H 0 1 N N N 18.374 2.454  5.791 3.628  -3.530 0.629  H52 OFU 44 
OFU H54 H12 H 0 1 N N N 18.750 -0.086 8.318 3.809  -0.388 2.528  H54 OFU 45 
OFU H55 H13 H 0 1 N N N 17.069 -0.528 7.864 3.547  -2.146 2.632  H55 OFU 46 
OFU H56 H14 H 0 1 N N N 18.444 -1.544 7.314 5.138  -1.510 2.150  H56 OFU 47 
OFU H34 H15 H 0 1 N N N 28.968 -1.628 4.815 -7.949 -2.302 -0.923 H34 OFU 48 
OFU H35 H16 H 0 1 N N N 29.031 -2.664 3.349 -7.097 -2.328 0.640  H35 OFU 49 
OFU H36 H17 H 0 1 N N N 29.988 -1.146 3.418 -8.664 -1.497 0.494  H36 OFU 50 
OFU H47 H18 H 0 1 N N N 26.312 -1.915 7.491 -3.904 2.771  1.657  H47 OFU 51 
OFU H50 H19 H 0 1 N N N 16.176 3.126  6.736 5.799  -3.837 -0.397 H50 OFU 52 
OFU H51 H20 H 0 1 N N N 15.862 1.416  7.186 5.979  -2.556 0.828  H51 OFU 53 
OFU H38 H21 H 0 1 N N N 28.626 0.811  4.264 -5.880 -1.763 -1.609 H38 OFU 54 
OFU H61 H22 H 0 1 N N N 25.459 2.216  5.670 -3.959 -1.880 1.588  H61 OFU 55 
OFU H59 H23 H 0 1 N N N 27.251 2.245  5.797 -5.722 -1.670 1.462  H59 OFU 56 
OFU H60 H24 H 0 1 N N N 26.443 2.908  4.336 -4.890 -2.851 0.423  H60 OFU 57 
OFU H46 H25 H 0 1 N N N 24.135 -2.656 8.401 -1.599 3.446  2.281  H46 OFU 58 
OFU H58 H27 H 0 1 N N N 15.656 -2.763 2.171 3.922  3.766  -0.465 H58 OFU 59 
OFU H57 H28 H 0 1 N N N 17.263 -3.034 2.274 5.226  3.816  -1.523 H57 OFU 60 
OFU H37 H37 H 0 1 N N N 27.062 -1.363 3.400 -6.826 0.043  0.455  H37 OFU 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OFU C5  C6  SING N N 1  
OFU C5  C4  SING N N 2  
OFU C6  N2  SING N N 3  
OFU C4  C3  SING N N 4  
OFU N30 C22 SING N N 5  
OFU N2  C3  SING N N 6  
OFU N2  C1  SING N N 7  
OFU S23 C22 SING Y N 8  
OFU S23 C19 SING Y N 9  
OFU C22 C21 DOUB Y N 10 
OFU C3  C7  SING N N 11 
OFU C7  C33 SING N N 12 
OFU C7  O8  SING N N 13 
OFU C21 C31 SING N N 14 
OFU C21 C20 SING Y N 15 
OFU N27 O26 SING Y N 16 
OFU N27 C28 DOUB Y N 17 
OFU C19 C15 SING N N 18 
OFU C19 C20 DOUB Y N 19 
OFU O26 C25 SING Y N 20 
OFU C31 N32 TRIP N N 21 
OFU C15 C16 SING N N 22 
OFU C20 C18 SING N N 23 
OFU O8  C13 SING N N 24 
OFU N12 C13 DOUB Y N 25 
OFU N12 C11 SING Y N 26 
OFU C28 C11 SING N N 27 
OFU C28 N29 SING Y N 28 
OFU C25 C18 SING N N 29 
OFU C25 N29 DOUB Y N 30 
OFU C13 C14 SING Y N 31 
OFU C11 N10 DOUB Y N 32 
OFU C18 C17 SING N N 33 
OFU C18 C24 SING N N 34 
OFU C16 C17 SING N N 35 
OFU C14 C9  DOUB Y N 36 
OFU N10 C9  SING Y N 37 
OFU C4  H40 SING N N 38 
OFU C4  H39 SING N N 39 
OFU C5  H42 SING N N 40 
OFU C5  H41 SING N N 41 
OFU C6  H44 SING N N 42 
OFU C6  H43 SING N N 43 
OFU C7  H45 SING N N 44 
OFU C15 H49 SING N N 45 
OFU C15 H48 SING N N 46 
OFU C17 H53 SING N N 47 
OFU C17 H52 SING N N 48 
OFU C24 H54 SING N N 49 
OFU C24 H55 SING N N 50 
OFU C24 H56 SING N N 51 
OFU C1  H34 SING N N 52 
OFU C1  H35 SING N N 53 
OFU C1  H36 SING N N 54 
OFU C14 H47 SING N N 55 
OFU C16 H50 SING N N 56 
OFU C16 H51 SING N N 57 
OFU C3  H38 SING N N 58 
OFU C33 H61 SING N N 59 
OFU C33 H59 SING N N 60 
OFU C33 H60 SING N N 61 
OFU C9  H46 SING N N 62 
OFU N30 H58 SING N N 63 
OFU N30 H57 SING N N 64 
OFU N2  H37 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OFU InChI            InChI                1.06  "InChI=1S/C23H27N7O2S/c1-13(15-6-5-11-30(15)3)31-17-8-10-26-20(27-17)21-28-22(32-29-21)23(2)9-4-7-16-18(23)14(12-24)19(25)33-16/h8,10,13,15H,4-7,9,11,25H2,1-3H3/p+1/t13-,15-,23-/m0/s1" 
OFU InChIKey         InChI                1.06  MIUFORKWYHBPRW-HMFCALDFSA-O                                                                                                                                                              
OFU SMILES_CANONICAL CACTVS               3.385 "C[C@H](Oc1ccnc(n1)c2noc(n2)[C@@]3(C)CCCc4sc(N)c(C#N)c34)[C@@H]5CCC[NH+]5C"                                                                                                              
OFU SMILES           CACTVS               3.385 "C[CH](Oc1ccnc(n1)c2noc(n2)[C]3(C)CCCc4sc(N)c(C#N)c34)[CH]5CCC[NH+]5C"                                                                                                                   
OFU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]([C@@H]1CCC[NH+]1C)Oc2ccnc(n2)c3nc(on3)[C@]4(CCCc5c4c(c(s5)N)C#N)C"                                                                                                              
OFU SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C1CCC[NH+]1C)Oc2ccnc(n2)c3nc(on3)C4(CCCc5c4c(c(s5)N)C#N)C"                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           OFU 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(4~{S})-2-azanyl-4-methyl-4-[3-[4-[(1~{S})-1-[(2~{S})-1-methylpyrrolidin-1-ium-2-yl]ethoxy]pyrimidin-2-yl]-1,2,4-oxadiazol-5-yl]-6,7-dihydro-5~{H}-1-benzothiophene-3-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OFU "Create component" 2022-09-06 PDBE 
OFU "Modify charge"    2023-06-01 PDBE 
OFU "Initial release"  2023-06-07 RCSB 
# 
