data_0AV
# 
_chem_comp.id                                    0AV 
_chem_comp.name                                  
;2'-O-methyladenosine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H16 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               DA 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2007-11-11 
_chem_comp.pdbx_modified_date                    2009-01-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      A2M 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        361.248 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     0AV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1M5K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0AV P      P      P 0 1 N N N 82.684 18.544 31.133 4.877  1.015  0.024  P      0AV 1  
0AV OP1    OP1    O 0 1 N N N 82.093 17.190 31.277 5.886  -0.021 -0.291 OP1    0AV 2  
0AV OP2    OP2    O 0 1 N N N 82.971 19.077 29.777 4.576  1.890  -1.293 OP2    0AV 3  
0AV "O5'"  "O5'"  O 0 1 N N N 81.752 19.582 31.902 3.518  0.307  0.520  "O5'"  0AV 4  
0AV "C5'"  "C5'"  C 0 1 N N N 81.418 19.369 33.266 2.831  -0.683 -0.248 "C5'"  0AV 5  
0AV "C4'"  "C4'"  C 0 1 N N R 80.565 20.498 33.789 1.585  -1.143 0.511  "C4'"  0AV 6  
0AV "O4'"  "O4'"  O 0 1 N N N 81.269 21.749 33.578 0.642  -0.062 0.604  "O4'"  0AV 7  
0AV "C3'"  "C3'"  C 0 1 N N R 79.248 20.628 33.030 0.896  -2.287 -0.258 "C3'"  0AV 8  
0AV "O3'"  "O3'"  O 0 1 N N N 78.101 20.638 33.877 0.842  -3.468 0.544  "O3'"  0AV 9  
0AV "C2'"  "C2'"  C 0 1 N N R 79.452 21.734 31.997 -0.531 -1.754 -0.533 "C2'"  0AV 10 
0AV "O2'"  "O2'"  O 0 1 N N N 78.367 22.628 31.867 -1.505 -2.782 -0.342 "O2'"  0AV 11 
0AV "C1'"  "C1'"  C 0 1 N N R 80.590 22.530 32.623 -0.677 -0.647 0.541  "C1'"  0AV 12 
0AV N9     N9     N 0 1 Y N N 81.535 23.148 31.703 -1.664 0.352  0.123  N9     0AV 13 
0AV C8     C8     C 0 1 Y N N 82.343 22.592 30.748 -1.412 1.486  -0.589 C8     0AV 14 
0AV N7     N7     N 0 1 Y N N 83.039 23.475 30.072 -2.518 2.143  -0.785 N7     0AV 15 
0AV C5     C5     C 0 1 Y N N 82.667 24.691 30.631 -3.547 1.473  -0.213 C5     0AV 16 
0AV C6     C6     C 0 1 Y N N 83.045 26.015 30.358 -4.931 1.694  -0.105 C6     0AV 17 
0AV N6     N6     N 0 1 N N N 83.923 26.354 29.411 -5.516 2.815  -0.666 N6     0AV 18 
0AV N1     N1     N 0 1 Y N N 82.482 26.995 31.101 -5.665 0.799  0.549  N1     0AV 19 
0AV C2     C2     C 0 1 Y N N 81.603 26.655 32.047 -5.116 -0.275 1.087  C2     0AV 20 
0AV N3     N3     N 0 1 Y N N 81.170 25.448 32.395 -3.826 -0.522 1.011  N3     0AV 21 
0AV C4     C4     C 0 1 Y N N 81.749 24.501 31.638 -3.013 0.313  0.372  C4     0AV 22 
0AV CM     CM     C 0 1 N N N 77.958 22.628 30.475 -1.812 -3.520 -1.526 CM     0AV 23 
0AV OXT    OXT    O 0 1 N N N 84.061 18.556 31.961 5.438  1.974  1.189  OXT    0AV 24 
0AV "H5'1" "H5'1" H 0 0 N N N 80.860 18.426 33.356 2.536  -0.259 -1.208 "H5'1" 0AV 25 
0AV HA2    HA2    H 0 1 N N N 82.346 19.324 33.855 3.490  -1.535 -0.415 HA2    0AV 26 
0AV HA     HA     H 0 1 N N N 80.364 20.285 34.849 1.863  -1.480 1.510  HA     0AV 27 
0AV HB     HB     H 0 1 N N N 78.981 19.730 32.453 1.418  -2.487 -1.194 HB     0AV 28 
0AV HC     HC     H 0 1 N N N 80.087 23.384 33.100 -0.950 -1.079 1.504  HC     0AV 29 
0AV "H3'"  "H3'"  H 0 1 N N N 78.378 20.640 34.786 1.711  -3.813 0.796  "H3'"  0AV 30 
0AV HD     HD     H 0 1 N N N 79.608 21.301 30.998 -0.603 -1.335 -1.537 HD     0AV 31 
0AV HMC1   HMC1   H 0 0 N N N 76.860 22.628 30.415 -2.203 -2.843 -2.285 HMC1   0AV 32 
0AV HMC2   HMC2   H 0 0 N N N 78.352 23.526 29.977 -0.907 -4.000 -1.899 HMC2   0AV 33 
0AV HMC3   HMC3   H 0 0 N N N 78.352 21.730 29.977 -2.558 -4.281 -1.297 HMC3   0AV 34 
0AV H8     H8     H 0 1 N N N 82.402 21.529 30.568 -0.438 1.795  -0.939 H8     0AV 35 
0AV H6N1   H6N1   H 0 0 N N N 83.451 26.439 28.533 -4.969 3.461  -1.141 H6N1   0AV 36 
0AV H6N2   H6N2   H 0 0 N N N 84.347 27.228 29.647 -6.472 2.956  -0.584 H6N2   0AV 37 
0AV H2     H2     H 0 1 N N N 81.185 27.477 32.609 -5.750 -0.976 1.610  H2     0AV 38 
0AV H15    H15    H 0 1 N N N 83.032 20.024 29.815 3.922  2.590  -1.160 H15    0AV 39 
0AV H16    H16    H 0 1 N N N 84.794 18.558 31.357 6.257  2.434  0.959  H16    0AV 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0AV P     OP1    DOUB N N 1  
0AV P     OP2    SING N N 2  
0AV P     "O5'"  SING N N 3  
0AV P     OXT    SING N N 4  
0AV "O5'" "C5'"  SING N N 5  
0AV "C5'" "C4'"  SING N N 6  
0AV "C5'" "H5'1" SING N N 7  
0AV "C5'" HA2    SING N N 8  
0AV "C4'" "O4'"  SING N N 9  
0AV "C4'" "C3'"  SING N N 10 
0AV "C4'" HA     SING N N 11 
0AV "O4'" "C1'"  SING N N 12 
0AV "C3'" "O3'"  SING N N 13 
0AV "C3'" "C2'"  SING N N 14 
0AV "C3'" HB     SING N N 15 
0AV "O3'" "H3'"  SING N N 16 
0AV "C2'" "O2'"  SING N N 17 
0AV "C2'" "C1'"  SING N N 18 
0AV "C2'" HD     SING N N 19 
0AV "O2'" CM     SING N N 20 
0AV "C1'" N9     SING N N 21 
0AV "C1'" HC     SING N N 22 
0AV N9    C8     SING N N 23 
0AV N9    C4     SING Y N 24 
0AV C8    N7     DOUB Y N 25 
0AV C8    H8     SING Y N 26 
0AV N7    C5     SING N N 27 
0AV C5    C6     SING Y N 28 
0AV C5    C4     DOUB Y N 29 
0AV C6    N6     SING Y N 30 
0AV C6    N1     DOUB N N 31 
0AV N6    H6N1   SING Y N 32 
0AV N6    H6N2   SING N N 33 
0AV N1    C2     SING N N 34 
0AV C2    N3     DOUB Y N 35 
0AV C2    H2     SING Y N 36 
0AV N3    C4     SING N N 37 
0AV CM    HMC1   SING Y N 38 
0AV CM    HMC2   SING N N 39 
0AV CM    HMC3   SING N N 40 
0AV OP2   H15    SING N N 41 
0AV OXT   H16    SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0AV SMILES           ACDLabs              10.04 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(OC)C3O"                                                                                                                                        
0AV InChI            InChI                1.02b "InChI=1/C11H16N5O7P/c1-21-8-7(17)5(2-22-24(18,19)20)23-11(8)16-4-15-6-9(12)13-3-14-10(6)16/h3-5,7-8,11,17H,2H2,1H3,(H2,12,13,14)(H2,18,19,20)/t5-,7-,8-,11-/m1/s1/f/h18-19H,12H2" 
0AV InChIKey         InChI                1.02b TVGFEBXIZUYVFR-XNALEWAGDG                                                                                                                                                          
0AV SMILES_CANONICAL CACTVS               3.341 "CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1n2cnc3c(N)ncnc23"                                                                                                                    
0AV SMILES           CACTVS               3.341 "CO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1n2cnc3c(N)ncnc23"                                                                                                                          
0AV SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CO[C@@H]1[C@@H]([C@H](O[C@H]1n2cnc3c2ncnc3N)COP(=O)(O)O)O"                                                                                                                        
0AV SMILES           "OpenEye OEToolkits" 1.5.0 "COC1C(C(OC1n2cnc3c2ncnc3N)COP(=O)(O)O)O"                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0AV "SYSTEMATIC NAME" ACDLabs              10.04 
;2'-O-methyladenosine 5'-(dihydrogen phosphate)
;
0AV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-methoxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0AV "Create component" 2007-11-11 RCSB 
# 
