data_APV
#

_chem_comp.id                                   APV
_chem_comp.name                                 "6-(5-AMINO-5-CARBOXY-PENTANOYLAMINO)-3-HYDROXYMETHYL-7-OXO-4-THIA-1-AZA-BICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H19 N3 O7 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "ALPHA-HYDROXYMETHYL-BETA-DEMETHYL-ISOPENICILLIN N"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-02-19
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       361.371
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    APV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1ODN
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
APV  C1    C1    C  0  1  N  N  N  17.373  36.329  5.522   0.390  -0.861   7.168  C1    APV   1  
APV  C2    C2    C  0  1  N  N  S  15.893  36.454  5.892  -0.262  -0.041   6.086  C2    APV   2  
APV  C3    C3    C  0  1  N  N  N  15.258  37.672  5.227   0.279  -0.472   4.721  C3    APV   3  
APV  C4    C4    C  0  1  N  N  N  13.762  37.775  5.602  -0.383   0.360   3.622  C4    APV   4  
APV  C7    C7    C  0  1  N  N  N  13.053  38.990  4.988   0.158  -0.071   2.258  C7    APV   5  
APV  C10   C10   C  0  1  N  N  N  11.672  39.141  5.576  -0.494   0.749   1.176  C10   APV   6  
APV  N11   N11   N  0  1  N  N  N  10.661  39.278  4.687  -0.169   0.542  -0.115  N11   APV   7  
APV  C12   C12   C  0  1  N  N  R   9.340  39.705  5.082  -0.804   1.340  -1.167  C12   APV   8  
APV  C13   C13   C  0  1  N  N  N   8.494  38.782  5.994  -1.745   0.546  -2.049  C13   APV   9  
APV  N14   N14   N  0  1  N  N  N  15.728  36.360  7.340   0.034   1.381   6.303  N14   APV  10  
APV  O15   O15   O  0  1  N  N  N  11.498  39.135  6.796  -1.312   1.595   1.467  O15   APV  11  
APV  C16   C16   C  0  1  N  N  R   8.189  39.482  4.064   0.063   1.515  -2.415  C16   APV  12  
APV  S17   S17   S  0  1  N  N  N   8.364  38.395  2.647   1.669   0.624  -2.345  S17   APV  13  
APV  O18   O18   O  0  1  N  N  N   8.582  38.343  7.117  -2.841   0.053  -1.886  O18   APV  14  
APV  O19   O19   O  0  1  N  N  N  18.298  36.491  6.257   1.415  -0.479   7.680  O19   APV  15  
APV  O20   O20   O  0  1  N  N  N  17.523  36.015  4.242  -0.167  -2.017   7.563  O20   APV  16  
APV  N29   N29   N  0  1  N  N  N   7.483  38.627  5.039  -0.853   0.568  -3.093  N29   APV  17  
APV  C30   C30   C  0  1  N  N  S   6.725  37.467  4.544  -0.234  -0.741  -3.441  C30   APV  18  
APV  C31   C31   C  0  1  N  N  N   5.411  37.345  5.166  -0.875  -1.247  -4.708  C31   APV  19  
APV  C32   C32   C  0  1  N  N  S   6.715  37.592  2.972   1.298  -0.618  -3.663  C32   APV  20  
APV  C33   C33   C  0  1  N  N  N   5.537  38.425  2.433   1.624  -0.075  -5.056  C33   APV  21  
APV  O42   O42   O  0  1  N  N  N   4.506  36.612  4.807  -1.692  -0.568  -5.284  O42   APV  22  
APV  O32   O32   O  0  1  N  N  N   5.834  39.651  1.794   3.019   0.223  -5.136  O32   APV  23  
APV  O43   O43   O  0  1  N  N  N   5.350  38.087  6.320  -0.538  -2.451  -5.196  O43   APV  24  
APV  H2    H2    H  0  1  N  N  N  15.324  35.606  5.484  -1.341  -0.195   6.113  H2    APV  25  
APV  H3C1  1H3C  H  0  0  N  N  N  15.779  38.581  5.563   1.358  -0.318   4.693  H3C1  APV  26  
APV  H3C2  2H3C  H  0  0  N  N  N  15.345  37.567  4.135   0.059  -1.527   4.560  H3C2  APV  27  
APV  H4C1  1H4C  H  0  0  N  N  N  13.253  36.864  5.254  -1.462   0.206   3.650  H4C1  APV  28  
APV  H4C2  2H4C  H  0  0  N  N  N  13.712  37.893  6.695  -0.163   1.415   3.784  H4C2  APV  29  
APV  H7C1  1H7C  H  0  0  N  N  N  13.639  39.897  5.199   1.237   0.083   2.230  H7C1  APV  30  
APV  H7C2  2H7C  H  0  0  N  N  N  12.966  38.843  3.901  -0.062  -1.126   2.097  H7C2  APV  31  
APV  H11   H11   H  0  1  N  N  N  10.834  39.077  3.728   0.485  -0.134  -0.347  H11   APV  32  
APV  H12   H12   H  0  1  N  N  N   9.696  40.694  5.407  -1.231   2.271  -0.795  H12   APV  33  
APV  H141  1H14  H  0  0  N  N  N  15.696  35.369  7.619   1.038   1.476   6.269  H141  APV  34  
APV  H142  2H14  H  0  0  N  N  N  16.521  36.822  7.807  -0.330   1.878   5.505  H142  APV  35  
APV  H16   H16   H  0  1  N  N  N   7.864  40.420  3.590   0.113   2.524  -2.823  H16   APV  36  
APV  H20   H20   H  0  1  N  N  N  18.441  35.937  4.012   0.251  -2.543   8.257  H20   APV  37  
APV  H30   H30   H  0  1  N  N  N   7.200  36.516  4.828  -0.421  -1.455  -2.639  H30   APV  38  
APV  H32   H32   H  0  1  N  N  N   6.578  36.627  2.461   1.807  -1.564  -3.477  H32   APV  39  
APV  H331  1H33  H  0  0  N  N  N   4.998  37.799  1.707   1.369  -0.823  -5.807  H331  APV  40  
APV  H332  2H33  H  0  0  N  N  N   4.967  38.711  3.329   1.047   0.831  -5.236  H332  APV  41  
APV  HA    HA    H  0  1  N  N  N   4.991  40.111  1.554   3.182   0.562  -6.027  HA    APV  42  
APV  H43   H43   H  0  1  N  N  N   4.494  38.007  6.725  -0.950  -2.775  -6.009  H43   APV  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
APV  C1   C2    SING  N  N   1  
APV  C1   O19   DOUB  N  N   2  
APV  C1   O20   SING  N  N   3  
APV  C2   C3    SING  N  N   4  
APV  C2   N14   SING  N  N   5  
APV  C2   H2    SING  N  N   6  
APV  C3   C4    SING  N  N   7  
APV  C3   H3C1  SING  N  N   8  
APV  C3   H3C2  SING  N  N   9  
APV  C4   C7    SING  N  N  10  
APV  C4   H4C1  SING  N  N  11  
APV  C4   H4C2  SING  N  N  12  
APV  C7   C10   SING  N  N  13  
APV  C7   H7C1  SING  N  N  14  
APV  C7   H7C2  SING  N  N  15  
APV  C10  N11   SING  N  N  16  
APV  C10  O15   DOUB  N  N  17  
APV  N11  C12   SING  N  N  18  
APV  N11  H11   SING  N  N  19  
APV  C12  C13   SING  N  N  20  
APV  C12  C16   SING  N  N  21  
APV  C12  H12   SING  N  N  22  
APV  C13  O18   DOUB  N  N  23  
APV  C13  N29   SING  N  N  24  
APV  N14  H141  SING  N  N  25  
APV  N14  H142  SING  N  N  26  
APV  C16  S17   SING  N  N  27  
APV  C16  N29   SING  N  N  28  
APV  C16  H16   SING  N  N  29  
APV  S17  C32   SING  N  N  30  
APV  O20  H20   SING  N  N  31  
APV  N29  C30   SING  N  N  32  
APV  C30  C31   SING  N  N  33  
APV  C30  C32   SING  N  N  34  
APV  C30  H30   SING  N  N  35  
APV  C31  O42   DOUB  N  N  36  
APV  C31  O43   SING  N  N  37  
APV  C32  C33   SING  N  N  38  
APV  C32  H32   SING  N  N  39  
APV  C33  O32   SING  N  N  40  
APV  C33  H331  SING  N  N  41  
APV  C33  H332  SING  N  N  42  
APV  O32  HA    SING  N  N  43  
APV  O43  H43   SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
APV  SMILES            ACDLabs               10.04  "O=C2N1C(C(=O)O)C(SC1C2NC(=O)CCCC(C(=O)O)N)CO"  
APV  SMILES_CANONICAL  CACTVS                3.341  "N[C@@H](CCCC(=O)N[C@H]1[C@H]2S[C@H](CO)[C@@H](N2C1=O)C(O)=O)C(O)=O"  
APV  SMILES            CACTVS                3.341  "N[CH](CCCC(=O)N[CH]1[CH]2S[CH](CO)[CH](N2C1=O)C(O)=O)C(O)=O"  
APV  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C(C[C@@H](C(=O)O)N)CC(=O)N[C@H]1[C@@H]2N(C1=O)[C@H]([C@H](S2)CO)C(=O)O"  
APV  SMILES            "OpenEye OEToolkits"  1.5.0  "C(CC(C(=O)O)N)CC(=O)NC1C2N(C1=O)C(C(S2)CO)C(=O)O"  
APV  InChI             InChI                 1.03   "InChI=1S/C13H19N3O7S/c14-5(12(20)21)2-1-3-7(18)15-8-10(19)16-9(13(22)23)6(4-17)24-11(8)16/h5-6,8-9,11,17H,1-4,14H2,(H,15,18)(H,20,21)(H,22,23)/t5-,6+,8+,9+,11+/m0/s1"  
APV  InChIKey          InChI                 1.03   ONQGMOJLKCORAC-DANLAGSESA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
APV  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2S,3S,5R,6R)-6-{[(5S)-5-amino-5-carboxypentanoyl]amino}-3-(hydroxymethyl)-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid"  
APV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S,3S,5R,6R)-6-[[(5S)-5-amino-6-hydroxy-6-oxo-hexanoyl]amino]-3-(hydroxymethyl)-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
APV  "Create component"   2003-02-19  EBI   
APV  "Modify descriptor"  2011-06-04  RCSB  
APV  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     APV
_pdbx_chem_comp_synonyms.name        "ALPHA-HYDROXYMETHYL-BETA-DEMETHYL-ISOPENICILLIN N"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
