data_AVV
#

_chem_comp.id                                   AVV
_chem_comp.name                                 
;[(2R,3S,4R,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl
[(2R,3S,4S)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H22 F N5 O13 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-fluoro-adenosine diphosphate ribose, 2F-ADPRI"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-07-14
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       561.307
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AVV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3I9J
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AVV  PA      PA      P  0  1  N  N  N   2.410   0.874  -19.670  -1.464  -2.810   0.408  PA      AVV   1  
AVV  PN      PN      P  0  1  N  N  N   4.568  -0.892  -20.440  -4.093  -1.460   0.638  PN      AVV   2  
AVV  F1A     F1A     F  0  1  N  N  N   9.182   7.421  -17.793   7.752   2.828  -2.146  F1A     AVV   3  
AVV  N1A     N1A     N  0  1  Y  N  N   9.602   7.292  -20.148   7.246   3.349   0.038  N1A     AVV   4  
AVV  O1A     O1A     O  0  1  N  N  N   1.250   1.008  -18.705  -1.822  -4.265  -0.182  O1A     AVV   5  
AVV  O1N     O1N     O  0  1  N  N  N   4.600  -2.430  -20.589  -5.115  -2.630   0.215  O1N     AVV   6  
AVV  C2A     C2A     C  0  1  Y  N  N   8.779   7.152  -19.060   7.027   2.598  -1.029  C2A     AVV   7  
AVV  O2A     O2A     O  0  1  N  N  N   2.171   1.191  -21.140  -1.337  -2.893   1.881  O2A     AVV   8  
AVV  O2N     O2N     O  0  1  N  N  N   4.597  -0.018  -21.728  -4.006  -1.391   2.114  O2N     AVV   9  
AVV  O3      O3      O  0  1  N  N  N   3.165  -0.569  -19.657  -2.636  -1.774   0.029  O3      AVV  10  
AVV  N3A     N3A     N  0  1  Y  N  N   7.513   6.742  -19.221   6.128   1.634  -1.042  N3A     AVV  11  
AVV  C4A     C4A     C  0  1  Y  N  N   7.061   6.464  -20.454   5.395   1.377   0.037  C4A     AVV  12  
AVV  C5A     C5A     C  0  1  Y  N  N   7.852   6.587  -21.576   5.591   2.147   1.195  C5A     AVV  13  
AVV  C6A     C6A     C  0  1  Y  N  N   9.166   7.018  -21.399   6.561   3.164   1.161  C6A     AVV  14  
AVV  N6A     N6A     N  0  1  N  N  N  10.001   7.169  -22.446   6.797   3.953   2.273  N6A     AVV  15  
AVV  N7A     N7A     N  0  1  Y  N  N   7.067   6.227  -22.629   4.728   1.685   2.133  N7A     AVV  16  
AVV  C8A     C8A     C  0  1  Y  N  N   5.834   5.889  -22.158   4.033   0.704   1.635  C8A     AVV  17  
AVV  N9A     N9A     N  0  1  Y  N  N   5.866   6.060  -20.826   4.407   0.476   0.344  N9A     AVV  18  
AVV  "C1'A"  "C1'A"  C  0  0  N  N  R   4.868   5.831  -19.765   3.856  -0.544  -0.551  "C1'A"  AVV  19  
AVV  "C1'N"  "C1'N"  C  0  0  N  N  N   8.966  -1.608  -17.377  -7.196   2.641  -2.102  "C1'N"  AVV  20  
AVV  "C2'A"  "C2'A"  C  0  0  N  N  R   3.437   5.614  -20.243   4.683  -1.845  -0.458  "C2'A"  AVV  21  
AVV  "O2'A"  "O2'A"  O  0  0  N  N  N   2.618   6.667  -19.710   5.618  -1.923  -1.536  "O2'A"  AVV  22  
AVV  "C2'N"  "C2'N"  C  0  0  N  N  S   8.236  -1.748  -16.060  -8.203   2.774  -0.932  "C2'N"  AVV  23  
AVV  "O2'N"  "O2'N"  O  0  0  N  N  N   9.086  -2.382  -15.110  -8.821   4.063  -0.934  "O2'N"  AVV  24  
AVV  "C3'A"  "C3'A"  C  0  0  N  N  S   3.061   4.224  -19.719   3.629  -2.969  -0.573  "C3'A"  AVV  25  
AVV  "O3'A"  "O3'A"  O  0  0  N  N  N   2.031   4.188  -18.702   3.881  -3.775  -1.726  "O3'A"  AVV  26  
AVV  "C3'N"  "C3'N"  C  0  0  N  N  S   6.975  -2.523  -16.473  -7.288   2.602   0.305  "C3'N"  AVV  27  
AVV  "O3'N"  "O3'N"  O  0  0  N  N  N   7.273  -3.912  -16.608  -6.932   3.877   0.845  "O3'N"  AVV  28  
AVV  "C4'A"  "C4'A"  C  0  0  N  N  R   4.320   3.671  -19.080   2.290  -2.214  -0.723  "C4'A"  AVV  29  
AVV  "O4'A"  "O4'A"  O  0  0  N  N  N   5.361   4.632  -19.152   2.527  -0.920  -0.127  "O4'A"  AVV  30  
AVV  "C4'N"  "C4'N"  C  0  0  N  N  R   6.658  -1.984  -17.872  -6.043   1.879  -0.244  "C4'N"  AVV  31  
AVV  "O4'N"  "O4'N"  O  0  0  N  N  N   7.899  -1.492  -18.352  -6.275   1.629  -1.640  "O4'N"  AVV  32  
AVV  "C5'A"  "C5'A"  C  0  0  N  N  N   4.653   2.366  -19.750   1.176  -2.951   0.024  "C5'A"  AVV  33  
AVV  "O5'A"  "O5'A"  O  0  0  N  N  N   3.695   1.616  -19.030  -0.073  -2.302  -0.222  "O5'A"  AVV  34  
AVV  "C5'N"  "C5'N"  C  0  0  N  N  N   5.754  -0.772  -17.970  -5.842   0.556   0.498  "C5'N"  AVV  35  
AVV  "O5'N"  "O5'N"  O  0  0  N  N  N   5.702  -0.408  -19.344  -4.623  -0.052   0.065  "O5'N"  AVV  36  
AVV  HAO1    HAO1    H  0  0  N  N  N   0.476   1.291  -19.177  -1.920  -4.285  -1.144  HAO1    AVV  37  
AVV  HNO1    HNO1    H  0  0  N  N  N   4.636  -2.659  -21.510  -5.221  -2.733  -0.741  HNO1    AVV  38  
AVV  HAN6    HAN6    H  0  0  N  N  N  10.891   7.487  -22.120   6.291   3.808   3.087  HAN6    AVV  39  
AVV  HANA    HANA    H  0  0  N  N  N  10.111   6.292  -22.914   7.470   4.652   2.237  HANA    AVV  40  
AVV  HC8     HC8     H  0  1  N  N  N   4.992   5.549  -22.743   3.272   0.152   2.166  HC8     AVV  41  
AVV  "HC1'"  "HC1'"  H  0  0  N  N  N   4.780   6.714  -19.115   3.837  -0.177  -1.578  "HC1'"  AVV  42  
AVV  HC1A    HC1A    H  0  0  N  N  N   9.602  -2.483  -17.579  -7.703   2.313  -3.009  HC1A    AVV  43  
AVV  HC1B    HC1B    H  0  0  N  N  N   9.615  -0.720  -17.384  -6.679   3.585  -2.272  HC1B    AVV  44  
AVV  "HC2'"  "HC2'"  H  0  0  N  N  N   3.306   5.648  -21.335   5.198  -1.902   0.501  "HC2'"  AVV  45  
AVV  "HO2'"  "HO2'"  H  0  0  N  N  N   1.721   6.548  -19.998   6.164  -2.721  -1.526  "HO2'"  AVV  46  
AVV  HC2A    HC2A    H  0  0  N  N  N   7.954  -0.817  -15.547  -8.954   1.985  -0.973  HC2A    AVV  47  
AVV  HO2A    HO2A    H  0  0  N  N  N   8.627  -2.470  -14.283  -9.333   4.252  -1.733  HO2A    AVV  48  
AVV  "HC3'"  "HC3'"  H  0  0  N  N  N   2.663   3.658  -20.574   3.623  -3.582   0.328  "HC3'"  AVV  49  
AVV  "HO3'"  "HO3'"  H  0  0  N  N  N   1.871   3.288  -18.445   4.737  -4.225  -1.712  "HO3'"  AVV  50  
AVV  HC3A    HC3A    H  0  0  N  N  N   6.161  -2.407  -15.742  -7.781   1.992   1.063  HC3A    AVV  51  
AVV  HO3A    HO3A    H  0  0  N  N  N   6.488  -4.381  -16.863  -7.686   4.398   1.152  HO3A    AVV  52  
AVV  "HC4'"  "HC4'"  H  0  0  N  N  N   4.174   3.467  -18.009   2.031  -2.105  -1.776  "HC4'"  AVV  53  
AVV  HC4A    HC4A    H  0  0  N  N  N   6.155  -2.808  -18.400  -5.164   2.510  -0.121  HC4A    AVV  54  
AVV  "HC5'"  "HC5'"  H  0  0  N  N  N   4.515   2.361  -20.841   1.125  -3.982  -0.325  "HC5'"  AVV  55  
AVV  HC5A    HC5A    H  0  0  N  N  N   5.693   2.033  -19.616   1.387  -2.939   1.094  HC5A    AVV  56  
AVV  HC5B    HC5B    H  0  0  N  N  N   4.747  -1.014  -17.600  -5.793   0.744   1.570  HC5B    AVV  57  
AVV  HC5C    HC5C    H  0  0  N  N  N   6.158   0.056  -17.369  -6.676  -0.112   0.284  HC5C    AVV  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AVV  O2A     PA      DOUB  N  N   1  
AVV  PA      O3      SING  N  N   2  
AVV  PA      "O5'A"  SING  N  N   3  
AVV  PA      O1A     SING  N  N   4  
AVV  O2N     PN      DOUB  N  N   5  
AVV  O1N     PN      SING  N  N   6  
AVV  PN      O3      SING  N  N   7  
AVV  PN      "O5'N"  SING  N  N   8  
AVV  C2A     F1A     SING  N  N   9  
AVV  C6A     N1A     DOUB  Y  N  10  
AVV  N1A     C2A     SING  Y  N  11  
AVV  O1A     HAO1    SING  N  N  12  
AVV  O1N     HNO1    SING  N  N  13  
AVV  N3A     C2A     DOUB  Y  N  14  
AVV  C4A     N3A     SING  Y  N  15  
AVV  C5A     C4A     DOUB  Y  N  16  
AVV  N9A     C4A     SING  Y  N  17  
AVV  N7A     C5A     SING  Y  N  18  
AVV  C5A     C6A     SING  Y  N  19  
AVV  N6A     C6A     SING  N  N  20  
AVV  N6A     HAN6    SING  N  N  21  
AVV  N6A     HANA    SING  N  N  22  
AVV  N7A     C8A     DOUB  Y  N  23  
AVV  C8A     N9A     SING  Y  N  24  
AVV  C8A     HC8     SING  N  N  25  
AVV  N9A     "C1'A"  SING  N  N  26  
AVV  "C2'A"  "C1'A"  SING  N  N  27  
AVV  "C1'A"  "O4'A"  SING  N  N  28  
AVV  "C1'A"  "HC1'"  SING  N  N  29  
AVV  "O4'N"  "C1'N"  SING  N  N  30  
AVV  "C1'N"  "C2'N"  SING  N  N  31  
AVV  "C1'N"  HC1A    SING  N  N  32  
AVV  "C1'N"  HC1B    SING  N  N  33  
AVV  "C2'A"  "C3'A"  SING  N  N  34  
AVV  "C2'A"  "O2'A"  SING  N  N  35  
AVV  "C2'A"  "HC2'"  SING  N  N  36  
AVV  "O2'A"  "HO2'"  SING  N  N  37  
AVV  "C3'N"  "C2'N"  SING  N  N  38  
AVV  "C2'N"  "O2'N"  SING  N  N  39  
AVV  "C2'N"  HC2A    SING  N  N  40  
AVV  "O2'N"  HO2A    SING  N  N  41  
AVV  "C3'A"  "C4'A"  SING  N  N  42  
AVV  "C3'A"  "O3'A"  SING  N  N  43  
AVV  "C3'A"  "HC3'"  SING  N  N  44  
AVV  "O3'A"  "HO3'"  SING  N  N  45  
AVV  "C4'N"  "C3'N"  SING  N  N  46  
AVV  "O3'N"  "C3'N"  SING  N  N  47  
AVV  "C3'N"  HC3A    SING  N  N  48  
AVV  "O3'N"  HO3A    SING  N  N  49  
AVV  "C5'A"  "C4'A"  SING  N  N  50  
AVV  "O4'A"  "C4'A"  SING  N  N  51  
AVV  "C4'A"  "HC4'"  SING  N  N  52  
AVV  "O4'N"  "C4'N"  SING  N  N  53  
AVV  "C5'N"  "C4'N"  SING  N  N  54  
AVV  "C4'N"  HC4A    SING  N  N  55  
AVV  "C5'A"  "O5'A"  SING  N  N  56  
AVV  "C5'A"  "HC5'"  SING  N  N  57  
AVV  "C5'A"  HC5A    SING  N  N  58  
AVV  "O5'N"  "C5'N"  SING  N  N  59  
AVV  "C5'N"  HC5B    SING  N  N  60  
AVV  "C5'N"  HC5C    SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AVV  SMILES            ACDLabs               11.02  "O=P(OCC1OCC(O)C1O)(O)OP(=O)(O)OCC4OC(n3cnc2c(nc(F)nc23)N)C(O)C4O"  
AVV  SMILES_CANONICAL  CACTVS                3.352  "Nc1nc(F)nc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4OC[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O"  
AVV  SMILES            CACTVS                3.352  "Nc1nc(F)nc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4OC[CH](O)[CH]4O)[CH](O)[CH]3O"  
AVV  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@H](CO4)O)O)O)O)F)N"  
AVV  SMILES            "OpenEye OEToolkits"  1.7.0  "c1nc2c(nc(nc2n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(CO4)O)O)O)O)F)N"  
AVV  InChI             InChI                 1.03   "InChI=1S/C15H22FN5O13P2/c16-15-19-12(17)8-13(20-15)21(4-18-8)14-11(25)10(24)7(33-14)3-32-36(28,29)34-35(26,27)31-2-6-9(23)5(22)1-30-6/h4-7,9-11,14,22-25H,1-3H2,(H,26,27)(H,28,29)(H2,17,19,20)/t5-,6+,7+,9-,10+,11+,14+/m0/s1"  
AVV  InChIKey          InChI                 1.03   INVLSELIWGCOEO-ZVIMGNLFSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AVV  "SYSTEMATIC NAME"  ACDLabs               11.02  "[(2R,3S,4R,5R)-5-(6-amino-2-fluoro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4S)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)"  
AVV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "[[(2R,3S,4R,5R)-5-(6-azanyl-2-fluoro-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3S,4S)-3,4-dihydroxyoxolan-2-yl]methyl hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AVV  "Create component"      2009-07-14  PDBJ  
AVV  "Modify aromatic_flag"  2011-06-04  RCSB  
AVV  "Modify descriptor"     2011-06-04  RCSB  
AVV  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     AVV
_pdbx_chem_comp_synonyms.name        "2-fluoro-adenosine diphosphate ribose, 2F-ADPRI"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
