data_CSV
# 
_chem_comp.id                                    CSV 
_chem_comp.name                                  
"O-[(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-4-hydroxy-2-(hydroxymethyl)tetrahydrofuran-3-yl] O-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl} hydrogen (S)-phosphorothioate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H24 N5 O12 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-03-06 
_chem_comp.pdbx_modified_date                    2012-05-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        565.448 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     CSV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4DW5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
CSV O1   O1   O 0 1 N N N -45.568 28.176 -13.022 -5.309 3.592  1.273  O1   CSV 1  
CSV C2   C2   C 0 1 N N N -45.912 28.367 -11.639 -4.540 3.024  0.212  C2   CSV 2  
CSV C3   C3   C 0 1 N N R -46.293 29.816 -11.400 -3.812 1.777  0.720  C3   CSV 3  
CSV O4   O4   O 0 1 N N N -45.258 30.742 -11.886 -4.766 0.750  1.037  O4   CSV 4  
CSV C5   C5   C 0 1 N N S -47.566 30.269 -12.103 -2.888 1.224  -0.382 C5   CSV 5  
CSV O6   O6   O 0 1 N N N -48.726 29.730 -11.423 -1.529 1.219  0.060  O6   CSV 6  
CSV C7   C7   C 0 1 N N R -47.343 31.799 -12.091 -3.390 -0.223 -0.607 C7   CSV 7  
CSV O8   O8   O 0 1 N N N -47.583 32.484 -10.863 -2.293 -1.122 -0.778 O8   CSV 8  
CSV C9   C9   C 0 1 N N R -45.843 31.900 -12.448 -4.146 -0.514 0.719  C9   CSV 9  
CSV N10  N10  N 0 1 N N N -45.579 31.993 -14.002 -5.161 -1.552 0.521  N10  CSV 10 
CSV C11  C11  C 0 1 N N N -45.762 33.224 -14.639 -6.162 -1.350 -0.356 C11  CSV 11 
CSV N12  N12  N 0 1 N N N -45.626 33.302 -15.986 -7.098 -2.276 -0.555 N12  CSV 12 
CSV C13  C13  C 0 1 N N N -45.355 32.206 -16.704 -7.067 -3.424 0.108  C13  CSV 13 
CSV C14  C14  C 0 1 N N N -45.204 30.922 -16.087 -6.031 -3.667 1.033  C14  CSV 14 
CSV C15  C15  C 0 1 N N N -45.328 30.857 -14.744 -5.084 -2.718 1.221  C15  CSV 15 
CSV O16  O16  O 0 1 N N N -46.013 34.221 -13.940 -6.213 -0.302 -0.978 O16  CSV 16 
CSV N17  N17  N 0 1 N N N -45.258 32.354 -18.027 -8.040 -4.373 -0.106 N17  CSV 17 
CSV P18  P18  P 0 1 N N S -50.178 30.071 -12.040 -0.355 2.012  -0.706 P18  CSV 18 
CSV O19  O19  O 0 1 N N N -50.804 31.377 -11.758 -0.319 1.590  -2.124 O19  CSV 19 
CSV S20  S20  S 0 1 N N N -50.228 29.492 -13.448 -0.723 4.097  -0.598 S20  CSV 20 
CSV O21  O21  O 0 1 N N N -50.868 29.053 -11.028 1.058  1.679  -0.010 O21  CSV 21 
CSV C22  C22  C 0 1 N N N -50.513 27.679 -10.864 2.307  2.148  -0.523 C22  CSV 22 
CSV C23  C23  C 0 1 N N R -50.871 27.251 -9.451  3.444  1.653  0.373  C23  CSV 23 
CSV O24  O24  O 0 1 N N N -49.766 27.512 -8.517  3.607  0.225  0.236  O24  CSV 24 
CSV C25  C25  C 0 1 N N S -52.110 27.920 -8.826  4.792  2.250  -0.089 C25  CSV 25 
CSV O26  O26  O 0 1 N N N -52.853 26.963 -8.080  5.139  3.382  0.712  O26  CSV 26 
CSV C27  C27  C 0 1 N N R -51.483 29.006 -7.948  5.804  1.103  0.127  C27  CSV 27 
CSV O28  O28  O 0 1 N N N -52.268 29.352 -6.799  6.808  1.492  1.068  O28  CSV 28 
CSV C29  C29  C 0 1 N N R -50.224 28.305 -7.440  4.949  -0.051 0.694  C29  CSV 29 
CSV N30  N30  N 0 1 N N N -49.095 29.254 -6.901  5.413  -1.337 0.168  N30  CSV 30 
CSV C31  C31  C 0 1 N N N -48.474 28.934 -5.707  5.883  -2.272 1.013  C31  CSV 31 
CSV N32  N32  N 0 1 N N N -47.497 29.835 -5.297  6.316  -3.462 0.556  N32  CSV 32 
CSV C33  C33  C 0 1 N N N -47.091 30.963 -5.973  6.285  -3.736 -0.764 C33  CSV 33 
CSV C34  C34  C 0 1 N N N -47.788 31.207 -7.224  5.793  -2.760 -1.664 C34  CSV 34 
CSV C35  C35  C 0 1 N N N -48.758 30.369 -7.645  5.360  -1.577 -1.178 C35  CSV 35 
CSV O36  O36  O 0 1 N N N -48.780 27.941 -5.061  5.917  -2.040 2.206  O36  CSV 36 
CSV O37  O37  O 0 1 N N N -46.194 31.677 -5.519  6.677  -4.812 -1.178 O37  CSV 37 
CSV HO1  HO1  H 0 1 N N N -45.330 27.268 -13.167 -5.799 4.387  1.022  HO1  CSV 38 
CSV H2   H2   H 0 1 N N N -46.762 27.718 -11.381 -5.201 2.749  -0.610 H2   CSV 39 
CSV H2A  H2A  H 0 1 N N N -45.049 28.108 -11.009 -3.810 3.753  -0.139 H2A  CSV 40 
CSV H3   H3   H 0 1 N N N -46.425 29.965 -10.318 -3.226 2.025  1.605  H3   CSV 41 
CSV H5   H5   H 0 1 N N N -47.544 29.918 -13.145 -2.991 1.810  -1.296 H5   CSV 42 
CSV H7   H7   H 0 1 N N N -47.932 32.249 -12.904 -4.067 -0.272 -1.460 H7   CSV 43 
CSV HO8  HO8  H 0 1 N N N -47.414 33.412 -10.979 -2.556 -2.042 -0.922 HO8  CSV 44 
CSV H9   H9   H 0 1 N N N -45.431 32.804 -11.976 -3.445 -0.806 1.502  H9   CSV 45 
CSV H14  H14  H 0 1 N N N -44.999 30.039 -16.674 -5.992 -4.597 1.581  H14  CSV 46 
CSV H15  H15  H 0 1 N N N -45.230 29.904 -14.245 -4.280 -2.881 1.924  H15  CSV 47 
CSV HN17 HN17 H 0 0 N N N -45.387 33.256 -18.440 -8.751 -4.203 -0.743 HN17 CSV 48 
CSV HN1A HN1A H 0 0 N N N -45.057 31.563 -18.605 -8.014 -5.212 0.380  HN1A CSV 49 
CSV HS20 HS20 H 0 0 N N N -50.884 30.410 -14.095 -0.730 4.335  0.726  HS20 CSV 50 
CSV H22  H22  H 0 1 N N N -51.067 27.064 -11.589 2.450  1.768  -1.534 H22  CSV 51 
CSV H22A H22A H 0 0 N N N -49.432 27.554 -11.027 2.306  3.238  -0.541 H22A CSV 52 
CSV H23  H23  H 0 1 N N N -51.057 26.167 -9.469  3.249  1.917  1.413  H23  CSV 53 
CSV H25  H25  H 0 1 N N N -52.722 28.382 -9.614  4.745  2.528  -1.142 H25  CSV 54 
CSV HO26 HO26 H 0 0 N N N -53.615 27.382 -7.697  5.977  3.796  0.465  HO26 CSV 55 
CSV H27  H27  H 0 1 N N N -51.220 29.888 -8.551  6.259  0.812  -0.820 H27  CSV 56 
CSV HO28 HO28 H 0 0 N N N -51.822 30.028 -6.302  7.336  2.252  0.788  HO28 CSV 57 
CSV H29  H29  H 0 1 N N N -50.520 27.648 -6.609  4.985  -0.051 1.784  H29  CSV 58 
CSV H34  H34  H 0 1 N N N -47.527 32.067 -7.823  5.760  -2.961 -2.725 H34  CSV 59 
CSV H35  H35  H 0 1 N N N -49.275 30.571 -8.571  4.977  -0.822 -1.849 H35  CSV 60 
CSV HN32 HN32 H 0 0 N N N -47.045 29.645 -4.425  6.653  -4.125 1.179  HN32 CSV 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CSV O1  C2   SING N N 1  
CSV O1  HO1  SING N N 2  
CSV C2  C3   SING N N 3  
CSV C2  H2   SING N N 4  
CSV C2  H2A  SING N N 5  
CSV C5  C3   SING N N 6  
CSV O4  C3   SING N N 7  
CSV C3  H3   SING N N 8  
CSV C9  O4   SING N N 9  
CSV C5  C7   SING N N 10 
CSV C5  O6   SING N N 11 
CSV C5  H5   SING N N 12 
CSV P18 O6   SING N N 13 
CSV C9  C7   SING N N 14 
CSV C7  O8   SING N N 15 
CSV C7  H7   SING N N 16 
CSV O8  HO8  SING N N 17 
CSV N10 C9   SING N N 18 
CSV C9  H9   SING N N 19 
CSV C15 N10  SING N N 20 
CSV C11 N10  SING N N 21 
CSV N12 C11  SING N N 22 
CSV C11 O16  DOUB N N 23 
CSV C13 N12  DOUB N N 24 
CSV N17 C13  SING N N 25 
CSV C13 C14  SING N N 26 
CSV C14 C15  DOUB N N 27 
CSV C14 H14  SING N N 28 
CSV C15 H15  SING N N 29 
CSV N17 HN17 SING N N 30 
CSV N17 HN1A SING N N 31 
CSV S20 P18  SING N N 32 
CSV P18 O19  DOUB N N 33 
CSV P18 O21  SING N N 34 
CSV S20 HS20 SING N N 35 
CSV O21 C22  SING N N 36 
CSV C22 C23  SING N N 37 
CSV C22 H22  SING N N 38 
CSV C22 H22A SING N N 39 
CSV C23 C25  SING N N 40 
CSV C23 O24  SING N N 41 
CSV C23 H23  SING N N 42 
CSV O24 C29  SING N N 43 
CSV C25 O26  SING N N 44 
CSV C25 C27  SING N N 45 
CSV C25 H25  SING N N 46 
CSV O26 HO26 SING N N 47 
CSV C27 C29  SING N N 48 
CSV C27 O28  SING N N 49 
CSV C27 H27  SING N N 50 
CSV O28 HO28 SING N N 51 
CSV C29 N30  SING N N 52 
CSV C29 H29  SING N N 53 
CSV C35 N30  SING N N 54 
CSV N30 C31  SING N N 55 
CSV C31 N32  SING N N 56 
CSV C31 O36  DOUB N N 57 
CSV C33 N32  SING N N 58 
CSV C34 C33  SING N N 59 
CSV C33 O37  DOUB N N 60 
CSV C35 C34  DOUB N N 61 
CSV C34 H34  SING N N 62 
CSV C35 H35  SING N N 63 
CSV N32 HN32 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
CSV SMILES           ACDLabs              12.01 "O=C1C=CN(C(=O)N1)C2OC(C(O)C2O)COP(=O)(S)OC4C(OC(N3C(=O)N=C(N)C=C3)C4O)CO" 
CSV InChI            InChI                1.03  
"InChI=1S/C18H24N5O12PS/c19-9-1-3-22(17(29)20-9)16-13(28)14(7(5-24)33-16)35-36(31,37)32-6-8-11(26)12(27)15(34-8)23-4-2-10(25)21-18(23)30/h1-4,7-8,11-16,24,26-28H,5-6H2,(H,31,37)(H2,19,20,29)(H,21,25,30)/t7-,8-,11-,12-,13-,14-,15-,16-,36+/m1/s1" 
CSV InChIKey         InChI                1.03  VZQLNJPTHATNOF-OXIRAOGTSA-N 
CSV SMILES_CANONICAL CACTVS               3.370 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO)[C@@H](O[P@](S)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)N4C=CC(=O)NC4=O)[C@H]2O" 
CSV SMILES           CACTVS               3.370 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO)[CH](O[P](S)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)N4C=CC(=O)NC4=O)[CH]2O" 
CSV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O[P@](=O)(OC[C@@H]3[C@H]([C@H]([C@@H](O3)N4C=CC(=O)NC4=O)O)O)S)O" 
CSV SMILES           "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)CO)OP(=O)(OCC3C(C(C(O3)N4C=CC(=O)NC4=O)O)O)S)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
CSV "SYSTEMATIC NAME" ACDLabs              12.01 
"O-[(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-4-hydroxy-2-(hydroxymethyl)tetrahydrofuran-3-yl] O-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl} hydrogen (S)-phosphorothioate" 
CSV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 
"1-[(2R,3R,4S,5R)-5-[[[(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-2-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]oxy-sulfanyl-phosphoryl]oxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]pyrimidine-2,4-dione"                               
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
CSV "Create component" 2012-03-06 RCSB 
# 
