data_P9V
#

_chem_comp.id                                   P9V
_chem_comp.name                                 "(2R,3S,4S,5R)-2-[2-(methylsulfanyl)ethyl]piperidine-3,4,5-triol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H17 N O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-08-06
_chem_comp.pdbx_modified_date                   2020-08-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       207.290
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    P9V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6Q1N
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P9V  C1   C1   C  0  1  N  N  N  -44.802  39.647  -3.524  -5.031   0.912   0.035  C1   P9V   1  
P9V  C3   C2   C  0  1  N  N  R  -42.271  40.665  -5.384   0.210   0.030  -0.438  C3   P9V   2  
P9V  C4   C3   C  0  1  N  N  S  -41.996  41.697  -6.506   1.317  -1.019  -0.557  C4   P9V   3  
P9V  C5   C4   C  0  1  N  N  S  -41.015  40.929  -7.422   2.660  -0.315  -0.774  C5   P9V   4  
P9V  C6   C5   C  0  1  N  N  R  -39.762  40.539  -6.622   2.917   0.647   0.389  C6   P9V   5  
P9V  C7   C6   C  0  1  N  N  N  -40.171  39.665  -5.464   1.763   1.648   0.480  C7   P9V   6  
P9V  C16  C7   C  0  1  N  N  N  -42.877  39.364  -5.987  -1.130  -0.668  -0.200  C16  P9V   7  
P9V  C17  C8   C  0  1  N  N  N  -44.337  39.290  -6.432  -2.255   0.370  -0.206  C17  P9V   8  
P9V  N2   N1   N  0  1  N  N  N  -41.108  40.339  -4.555   0.502   0.926   0.689  N2   P9V   9  
P9V  O10  O1   O  0  1  N  N  N  -38.941  39.721  -7.461   3.006  -0.091   1.609  O10  P9V  10  
P9V  O12  O2   O  0  1  N  N  N  -43.173  42.075  -7.227   1.373  -1.793   0.643  O12  P9V  11  
P9V  O8   O3   O  0  1  N  N  N  -40.638  41.699  -8.570   2.621   0.417  -2.001  O8   P9V  12  
P9V  S18  S1   S  0  1  N  N  N  -45.513  38.949  -5.048  -3.844  -0.458   0.076  S18  P9V  13  
P9V  H1   H1   H  0  1  N  N  N  -45.483  39.458  -2.681  -6.038   0.526   0.196  H1   P9V  14  
P9V  H2   H2   H  0  1  N  N  N  -43.830  39.174  -3.323  -4.787   1.628   0.819  H2   P9V  15  
P9V  H3   H3   H  0  1  N  N  N  -44.663  40.731  -3.647  -4.983   1.406  -0.936  H3   P9V  16  
P9V  H4   H4   H  0  1  N  N  N  -43.041  41.101  -4.730   0.159   0.610  -1.359  H4   P9V  17  
P9V  H5   H5   H  0  1  N  N  N  -41.491  42.576  -6.081   1.109  -1.674  -1.403  H5   P9V  18  
P9V  H6   H6   H  0  1  N  N  N  -41.512  40.004  -7.750   3.457  -1.057  -0.817  H6   P9V  19  
P9V  H7   H7   H  0  1  N  N  N  -39.232  41.437  -6.271   3.850   1.183   0.218  H7   P9V  20  
P9V  H8   H8   H  0  1  N  N  N  -40.653  38.758  -5.859   1.936   2.326   1.316  H8   P9V  21  
P9V  H9   H9   H  0  1  N  N  N  -39.270  39.385  -4.898   1.704   2.221  -0.445  H9   P9V  22  
P9V  H10  H10  H  0  1  N  N  N  -42.745  38.580  -5.227  -1.305  -1.398  -0.990  H10  P9V  23  
P9V  H11  H11  H  0  1  N  N  N  -42.271  39.122  -6.872  -1.110  -1.176   0.765  H11  P9V  24  
P9V  H12  H12  H  0  1  N  N  N  -44.610  40.251  -6.892  -2.080   1.099   0.585  H12  P9V  25  
P9V  H13  H13  H  0  1  N  N  N  -44.434  38.486  -7.177  -2.275   0.877  -1.171  H13  P9V  26  
P9V  H14  H14  H  0  1  N  N  N  -41.370  39.731  -3.806   0.516   0.418   1.561  H14  P9V  27  
P9V  H16  H16  H  0  1  N  N  N  -38.158  39.466  -6.987   3.168   0.456   2.389  H16  P9V  28  
P9V  H17  H17  H  0  1  N  N  N  -43.762  42.545  -6.648   2.054  -2.479   0.638  H17  P9V  29  
P9V  H18  H18  H  0  1  N  N  N  -41.415  41.938  -9.061   3.439   0.893  -2.200  H18  P9V  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P9V  O8   C5   SING  N  N   1  
P9V  O10  C6   SING  N  N   2  
P9V  C5   C6   SING  N  N   3  
P9V  C5   C4   SING  N  N   4  
P9V  O12  C4   SING  N  N   5  
P9V  C6   C7   SING  N  N   6  
P9V  C4   C3   SING  N  N   7  
P9V  C17  C16  SING  N  N   8  
P9V  C17  S18  SING  N  N   9  
P9V  C16  C3   SING  N  N  10  
P9V  C7   N2   SING  N  N  11  
P9V  C3   N2   SING  N  N  12  
P9V  S18  C1   SING  N  N  13  
P9V  C1   H1   SING  N  N  14  
P9V  C1   H2   SING  N  N  15  
P9V  C1   H3   SING  N  N  16  
P9V  C3   H4   SING  N  N  17  
P9V  C4   H5   SING  N  N  18  
P9V  C5   H6   SING  N  N  19  
P9V  C6   H7   SING  N  N  20  
P9V  C7   H8   SING  N  N  21  
P9V  C7   H9   SING  N  N  22  
P9V  C16  H10  SING  N  N  23  
P9V  C16  H11  SING  N  N  24  
P9V  C17  H12  SING  N  N  25  
P9V  C17  H13  SING  N  N  26  
P9V  N2   H14  SING  N  N  27  
P9V  O10  H16  SING  N  N  28  
P9V  O12  H17  SING  N  N  29  
P9V  O8   H18  SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P9V  SMILES            ACDLabs               12.01  "CSCCC1NCC(C(C1O)O)O"  
P9V  InChI             InChI                 1.03   "InChI=1S/C8H17NO3S/c1-13-3-2-5-7(11)8(12)6(10)4-9-5/h5-12H,2-4H2,1H3/t5-,6-,7+,8+/m1/s1"  
P9V  InChIKey          InChI                 1.03   ZTGUKWHBLOJEPU-NGJRWZKOSA-N  
P9V  SMILES_CANONICAL  CACTVS                3.385  "CSCC[C@H]1NC[C@@H](O)[C@H](O)[C@H]1O"  
P9V  SMILES            CACTVS                3.385  "CSCC[CH]1NC[CH](O)[CH](O)[CH]1O"  
P9V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CSCC[C@@H]1[C@@H]([C@H]([C@@H](CN1)O)O)O"  
P9V  SMILES            "OpenEye OEToolkits"  2.0.7  "CSCCC1C(C(C(CN1)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P9V  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R,3S,4S,5R)-2-[2-(methylsulfanyl)ethyl]piperidine-3,4,5-triol"  
P9V  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R},3~{S},4~{S},5~{R})-2-(2-methylsulfanylethyl)piperidine-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P9V  "Create component"  2019-08-06  RCSB  
P9V  "Initial release"   2020-08-19  RCSB  
##
