data_RAV
#

_chem_comp.id                                   RAV
_chem_comp.name                                 "5-ethyl-5-[(2S)-pentan-2-yl]pyrimidine-2,4,6(1H,3H,5H)-trione"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H18 N2 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Pentobarbital
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-04-04
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       226.272
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RAV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3RAV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RAV  C1    C1    C  0  1  N  N  N  34.935   0.056  34.956   0.076   0.463   0.167  C1    RAV   1  
RAV  C2    C2    C  0  1  N  N  N  34.949   1.323  34.142   1.181   1.114  -0.644  C2    RAV   2  
RAV  N3    N3    N  0  1  N  N  N  35.108   1.293  32.813   2.327   0.420  -0.806  N3    RAV   3  
RAV  C4    C4    C  0  1  N  N  N  35.260   0.152  32.137   2.499  -0.798  -0.279  C4    RAV   4  
RAV  N5    N5    N  0  1  N  N  N  35.263  -1.029  32.756   1.584  -1.451   0.448  N5    RAV   5  
RAV  C6    C6    C  0  1  N  N  N  35.118  -1.146  34.078   0.377  -0.919   0.716  C6    RAV   6  
RAV  O7    O7    O  0  1  N  N  N  35.128  -2.289  34.586  -0.443  -1.520   1.376  O7    RAV   7  
RAV  O8    O8    O  0  1  N  N  N  34.817   2.439  34.690   1.040   2.216  -1.128  O8    RAV   8  
RAV  O9    O9    O  0  1  N  N  N  35.403   0.186  30.897   3.562  -1.352  -0.475  O9    RAV   9  
RAV  C12   C12   C  0  1  N  N  N  36.075   0.108  35.960  -0.254   1.382   1.345  C12   RAV  10  
RAV  C13   C13   C  0  1  N  N  S  33.632  -0.116  35.735  -1.168   0.364  -0.718  C13   RAV  11  
RAV  C14   C14   C  0  1  N  N  N  33.232   1.146  36.482  -0.925  -0.663  -1.826  C14   RAV  12  
RAV  C15   C15   C  0  1  N  N  N  32.498  -0.648  34.863  -2.363  -0.075   0.130  C15   RAV  13  
RAV  C16   C16   C  0  1  N  N  N  31.205  -0.770  35.664  -3.631  -0.055  -0.726  C16   RAV  14  
RAV  C17   C17   C  0  1  N  N  N  30.093   0.021  35.009  -4.827  -0.493   0.122  C17   RAV  15  
RAV  C18   C18   C  0  1  N  N  N  35.772  -0.809  37.130   0.970   1.506   2.254  C18   RAV  16  
RAV  HN3   HN3   H  0  1  N  N  N  35.113   2.156  32.309   3.048   0.815  -1.321  HN3   RAV  17  
RAV  HN5   HN5   H  0  1  N  N  N  35.378  -1.858  32.209   1.797  -2.333   0.790  HN5   RAV  18  
RAV  H12   H12   H  0  1  N  N  N  37.005  -0.218  35.472  -0.530   2.368   0.971  H12   RAV  19  
RAV  H12A  H12A  H  0  0  N  N  N  36.192   1.139  36.326  -1.086   0.962   1.911  H12A  RAV  20  
RAV  H13   H13   H  0  1  N  N  N  33.830  -0.884  36.497  -1.376   1.337  -1.163  H13   RAV  21  
RAV  H14   H14   H  0  1  N  N  N  32.291   0.969  37.024  -0.012  -0.408  -2.364  H14   RAV  22  
RAV  H14A  H14A  H  0  0  N  N  N  34.023   1.414  37.198  -0.822  -1.655  -1.386  H14A  RAV  23  
RAV  H14B  H14B  H  0  0  N  N  N  33.093   1.968  35.764  -1.767  -0.658  -2.517  H14B  RAV  24  
RAV  H15   H15   H  0  1  N  N  N  32.336   0.046  34.025  -2.193  -1.085   0.503  H15   RAV  25  
RAV  H15A  H15A  H  0  0  N  N  N  32.777  -1.641  34.480  -2.482   0.608   0.971  H15A  RAV  26  
RAV  H16   H16   H  0  1  N  N  N  30.912  -1.829  35.713  -3.802   0.955  -1.099  H16   RAV  27  
RAV  H16A  H16A  H  0  0  N  N  N  31.373  -0.381  36.679  -3.513  -0.737  -1.567  H16A  RAV  28  
RAV  H17   H17   H  0  1  N  N  N  29.172  -0.081  35.602  -4.656  -1.503   0.495  H17   RAV  29  
RAV  H17A  H17A  H  0  0  N  N  N  30.380   1.082  34.956  -4.945   0.190   0.964  H17A  RAV  30  
RAV  H17B  H17B  H  0  0  N  N  N  29.919  -0.363  33.993  -5.730  -0.479  -0.488  H17B  RAV  31  
RAV  H18   H18   H  0  1  N  N  N  36.600  -0.767  37.853   0.735   2.160   3.093  H18   RAV  32  
RAV  H18A  H18A  H  0  0  N  N  N  34.842  -0.484  37.619   1.246   0.520   2.628  H18A  RAV  33  
RAV  H18B  H18B  H  0  0  N  N  N  35.654  -1.840  36.766   1.802   1.925   1.688  H18B  RAV  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RAV  C6   C1    SING  N  N   1  
RAV  C2   C1    SING  N  N   2  
RAV  C1   C13   SING  N  N   3  
RAV  C1   C12   SING  N  N   4  
RAV  N3   C2    SING  N  N   5  
RAV  C2   O8    DOUB  N  N   6  
RAV  C4   N3    SING  N  N   7  
RAV  N3   HN3   SING  N  N   8  
RAV  O9   C4    DOUB  N  N   9  
RAV  C4   N5    SING  N  N  10  
RAV  N5   C6    SING  N  N  11  
RAV  N5   HN5   SING  N  N  12  
RAV  C6   O7    DOUB  N  N  13  
RAV  C12  C18   SING  N  N  14  
RAV  C12  H12   SING  N  N  15  
RAV  C12  H12A  SING  N  N  16  
RAV  C15  C13   SING  N  N  17  
RAV  C13  C14   SING  N  N  18  
RAV  C13  H13   SING  N  N  19  
RAV  C14  H14   SING  N  N  20  
RAV  C14  H14A  SING  N  N  21  
RAV  C14  H14B  SING  N  N  22  
RAV  C15  C16   SING  N  N  23  
RAV  C15  H15   SING  N  N  24  
RAV  C15  H15A  SING  N  N  25  
RAV  C17  C16   SING  N  N  26  
RAV  C16  H16   SING  N  N  27  
RAV  C16  H16A  SING  N  N  28  
RAV  C17  H17   SING  N  N  29  
RAV  C17  H17A  SING  N  N  30  
RAV  C17  H17B  SING  N  N  31  
RAV  C18  H18   SING  N  N  32  
RAV  C18  H18A  SING  N  N  33  
RAV  C18  H18B  SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RAV  SMILES            ACDLabs               12.01  "O=C1NC(=O)NC(=O)C1(C(C)CCC)CC"  
RAV  SMILES_CANONICAL  CACTVS                3.370  "CCC[C@H](C)C1(CC)C(=O)NC(=O)NC1=O"  
RAV  SMILES            CACTVS                3.370  "CCC[CH](C)C1(CC)C(=O)NC(=O)NC1=O"  
RAV  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "CCC[C@H](C)C1(C(=O)NC(=O)NC1=O)CC"  
RAV  SMILES            "OpenEye OEToolkits"  1.7.0  "CCCC(C)C1(C(=O)NC(=O)NC1=O)CC"  
RAV  InChI             InChI                 1.03   "InChI=1S/C11H18N2O3/c1-4-6-7(3)11(5-2)8(14)12-10(16)13-9(11)15/h7H,4-6H2,1-3H3,(H2,12,13,14,15,16)/t7-/m0/s1"  
RAV  InChIKey          InChI                 1.03   WEXRUCMBJFQVBZ-ZETCQYMHSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RAV  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-ethyl-5-[(2S)-pentan-2-yl]pyrimidine-2,4,6(1H,3H,5H)-trione"  
RAV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "5-ethyl-5-[(2S)-pentan-2-yl]-1,3-diazinane-2,4,6-trione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RAV  "Create component"   2011-04-04  RCSB  
RAV  "Modify descriptor"  2011-06-04  RCSB  
RAV  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     RAV
_pdbx_chem_comp_synonyms.name        Pentobarbital
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
