data_TYV
#

_chem_comp.id                                   TYV
_chem_comp.name                                 alpha-D-Tyvelopyranose
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;alpha-D-Tyvelose; 3,6-dideoxy-alpha-D-arabino-hexopyranose; 3,6-dideoxy-alpha-D-mannopyranose;
3,6-dideoxy-alpha-D-altropyranose; 3-deoxy-alpha-D-rhamnopyranose; D-Tyvelose; Tyvelose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       148.157
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TYV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1TYU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  TYV  alpha-D-Tyvelose                            PDB  ?  
2  TYV  "3,6-dideoxy-alpha-D-arabino-hexopyranose"  PDB  ?  
3  TYV  "3,6-dideoxy-alpha-D-mannopyranose"         PDB  ?  
4  TYV  "3,6-dideoxy-alpha-D-altropyranose"         PDB  ?  
5  TYV  3-deoxy-alpha-D-rhamnopyranose              PDB  ?  
6  TYV  D-Tyvelose                                  PDB  ?  
7  TYV  Tyvelose                                    PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TYV  C1   C1   C  0  1  N  N  S  69.317  48.244  89.220   0.817   0.061  -1.355  C1   TYV   1  
TYV  C2   C2   C  0  1  N  N  S  68.902  48.540  87.774  -0.704   0.093  -1.511  C2   TYV   2  
TYV  C3   C3   C  0  1  N  N  N  70.109  48.443  86.820  -1.322   0.716  -0.253  C3   TYV   3  
TYV  C4   C4   C  0  1  N  N  S  71.266  49.309  87.339  -0.807  -0.045   0.972  C4   TYV   4  
TYV  C5   C5   C  0  1  N  N  R  71.610  48.888  88.760   0.722  -0.065   0.941  C5   TYV   5  
TYV  C6   C6   C  0  1  N  N  N  72.741  49.678  89.378   1.247  -0.793   2.180  C6   TYV   6  
TYV  O1   O1   O  0  1  N  Y  N  69.567  46.872  89.379   1.302   1.391  -1.159  O1   TYV   7  
TYV  O2   O2   O  0  1  N  N  N  68.332  49.839  87.709  -1.196  -1.237  -1.678  O2   TYV   8  
TYV  O4   O4   O  0  1  N  N  N  72.402  49.158  86.509  -1.252   0.608   2.163  O4   TYV   9  
TYV  O5   O5   O  0  1  N  N  N  70.442  49.049  89.607   1.171  -0.742  -0.231  O5   TYV  10  
TYV  H1   H1   H  0  1  N  N  N  68.477  48.516  89.901   1.265  -0.358  -2.256  H1   TYV  11  
TYV  H2   H2   H  0  1  N  N  N  68.150  47.781  87.453  -0.969   0.692  -2.382  H2   TYV  12  
TYV  H31  H31  H  0  1  N  N  N  70.422  47.386  86.651  -1.030   1.764  -0.183  H31  TYV  13  
TYV  H32  H32  H  0  1  N  N  N  69.832  48.701  85.771  -2.408   0.638  -0.303  H32  TYV  14  
TYV  H4   H4   H  0  1  N  N  N  70.954  50.379  87.328  -1.187  -1.066   0.953  H4   TYV  15  
TYV  H5   H5   H  0  1  N  N  N  71.939  47.825  88.691   1.098   0.957   0.935  H5   TYV  16  
TYV  H61  H61  H  0  1  N  N  N  72.993  49.369  90.419   2.337  -0.806   2.160  H61  TYV  17  
TYV  H62  H62  H  0  1  N  N  N  73.646  49.639  88.728   0.906  -0.275   3.077  H62  TYV  18  
TYV  H63  H63  H  0  1  N  N  N  72.524  50.770  89.334   0.872  -1.816   2.187  H63  TYV  19  
TYV  HO1  HO1  H  0  1  N  Y  N  69.824  46.688  90.275   2.262   1.329  -1.071  HO1  TYV  20  
TYV  HO2  HO2  H  0  1  N  Y  N  68.074  50.022  86.813  -0.777  -1.592  -2.474  HO2  TYV  21  
TYV  HO4  HO4  H  0  1  N  Y  N  73.117  49.693  86.830  -2.218   0.605   2.138  HO4  TYV  22  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TYV  C1  C2   SING  N  N   1  
TYV  C1  O1   SING  N  N   2  
TYV  C1  O5   SING  N  N   3  
TYV  C1  H1   SING  N  N   4  
TYV  C2  C3   SING  N  N   5  
TYV  C2  O2   SING  N  N   6  
TYV  C2  H2   SING  N  N   7  
TYV  C3  C4   SING  N  N   8  
TYV  C3  H31  SING  N  N   9  
TYV  C3  H32  SING  N  N  10  
TYV  C4  C5   SING  N  N  11  
TYV  C4  O4   SING  N  N  12  
TYV  C4  H4   SING  N  N  13  
TYV  C5  C6   SING  N  N  14  
TYV  C5  O5   SING  N  N  15  
TYV  C5  H5   SING  N  N  16  
TYV  C6  H61  SING  N  N  17  
TYV  C6  H62  SING  N  N  18  
TYV  C6  H63  SING  N  N  19  
TYV  O1  HO1  SING  N  N  20  
TYV  O2  HO2  SING  N  N  21  
TYV  O4  HO4  SING  N  N  22  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TYV  SMILES            ACDLabs               10.04  "OC1C(OC(O)C(O)C1)C"  
TYV  SMILES_CANONICAL  CACTVS                3.341  "C[C@H]1O[C@H](O)[C@@H](O)C[C@@H]1O"  
TYV  SMILES            CACTVS                3.341  "C[CH]1O[CH](O)[CH](O)C[CH]1O"  
TYV  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@@H]1[C@H](C[C@@H]([C@H](O1)O)O)O"  
TYV  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C(CC(C(O1)O)O)O"  
TYV  InChI             InChI                 1.03   "InChI=1S/C6H12O4/c1-3-4(7)2-5(8)6(9)10-3/h3-9H,2H2,1H3/t3-,4+,5+,6+/m1/s1"  
TYV  InChIKey          InChI                 1.03   KYPWIZMAJMNPMJ-VANKVMQKSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TYV  "SYSTEMATIC NAME"                      ACDLabs               10.04  "3,6-dideoxy-alpha-D-arabino-hexopyranose"  
TYV  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.5.0  "(2S,3S,5S,6R)-6-methyloxane-2,3,5-triol"  
TYV  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DTyva  
TYV  "COMMON NAME"                          GMML                  1.0    a-D-Tyvelopyranose  
TYV  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    a-D-3-deoxy-Rhap  
TYV  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    Tyv  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
TYV  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
TYV  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
TYV  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
TYV  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TYV  "Create component"    1999-07-08  EBI   
TYV  "Modify descriptor"   2011-06-04  RCSB  
TYV  "Other modification"  2019-08-12  RCSB  
TYV  "Other modification"  2019-12-19  RCSB  
TYV  "Other modification"  2020-07-03  RCSB  
TYV  "Modify name"         2020-07-17  RCSB  
TYV  "Modify synonyms"     2020-07-17  RCSB  
##
