data_VMV
#

_chem_comp.id                                   VMV
_chem_comp.name                                 "N-[4-({[(6S)-2,4-diamino-5,6,7,8-tetrahydropyrido[3,2-d]pyrimidin-6-yl]methyl}amino)benzene-1-carbonyl]-L-glutamic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H25 N7 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-28
_chem_comp.pdbx_modified_date                   2021-04-16
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       443.456
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VMV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JXF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VMV  C2    C1   C  0  1  Y  N  N  -10.039  20.693  13.688   -8.585   0.009   0.202  C2    VMV   1  
VMV  C6    C2   C  0  1  N  N  S   -5.395  21.751  14.813   -3.861   1.193  -0.131  C6    VMV   2  
VMV  C8    C3   C  0  1  N  N  N   -7.675  22.236  16.014   -5.889   2.495   0.460  C8    VMV   3  
VMV  C4    C4   C  0  1  Y  N  N   -8.136  20.925  12.501   -6.634  -1.204   0.050  C4    VMV   4  
VMV  C9    C5   C  0  1  N  N  N   -5.117  20.237  14.900   -2.349   1.073   0.065  C9    VMV   5  
VMV  C12   C6   C  0  1  Y  N  N   -4.950  16.965  18.879    2.223  -0.947  -0.700  C12   VMV   6  
VMV  C15   C7   C  0  1  Y  N  N   -4.423  18.910  16.968   -0.480  -0.336  -0.735  C15   VMV   7  
VMV  C16   C8   C  0  1  Y  N  N   -4.291  19.215  18.313    0.005  -1.386  -1.510  C16   VMV   8  
VMV  C17   C9   C  0  1  Y  N  N   -4.559  18.240  19.263    1.347  -1.689  -1.498  C17   VMV   9  
VMV  N     N1   N  0  1  N  N  N   -5.430  16.485  21.342    4.505  -0.552   0.084  N     VMV  10  
VMV  CA    C10  C  0  1  N  N  S   -5.730  15.718  22.564    5.935  -0.871   0.097  CA    VMV  11  
VMV  C     C11  C  0  1  N  N  N   -5.252  15.923  19.992    3.662  -1.268  -0.686  C     VMV  12  
VMV  O     O1   O  0  1  N  N  N   -5.345  14.766  19.737    4.089  -2.179  -1.370  O     VMV  13  
VMV  CB    C12  C  0  1  N  N  N   -5.563  14.219  22.442    6.731   0.373   0.497  CB    VMV  14  
VMV  CG    C13  C  0  1  N  N  N   -6.893  13.596  21.958    6.568   1.450  -0.578  CG    VMV  15  
VMV  CD    C14  C  0  1  N  N  N   -6.989  12.090  22.233    7.352   2.675  -0.185  CD    VMV  16  
VMV  OE1   O2   O  0  1  N  N  N   -8.071  11.478  22.029    7.978   2.686   0.849  OE1   VMV  17  
VMV  OE2   O3   O  0  1  N  N  N   -5.983  11.470  22.666    7.355   3.754  -0.983  OE2   VMV  18  
VMV  C13   C15  C  0  1  Y  N  N   -5.091  16.657  17.531    1.732   0.104   0.080  C13   VMV  19  
VMV  C14   C16  C  0  1  Y  N  N   -4.821  17.636  16.574    0.389   0.405   0.060  C14   VMV  20  
VMV  C4A   C17  C  0  1  Y  N  N   -7.511  21.493  13.611   -5.897  -0.014   0.184  C4A   VMV  21  
VMV  C7    C18  C  0  1  N  N  N   -6.166  22.207  16.040   -4.419   2.266   0.812  C7    VMV  22  
VMV  C8A   C19  C  0  1  Y  N  N   -8.264  21.626  14.742   -6.590   1.169   0.326  C8A   VMV  23  
VMV  CT    C20  C  0  1  N  N  N   -4.791  16.312  23.627    6.194  -1.973   1.092  CT    VMV  24  
VMV  N1    N2   N  0  1  Y  N  N   -9.521  21.221  14.777   -7.921   1.145   0.333  N1    VMV  25  
VMV  N10   N3   N  0  1  N  N  N   -4.133  19.961  15.971   -1.837  -0.032  -0.749  N10   VMV  26  
VMV  N3    N4   N  0  1  Y  N  N   -9.385  20.554  12.578   -7.959  -1.150   0.063  N3    VMV  27  
VMV  N5    N5   N  0  1  N  N  N   -6.103  21.944  13.537   -4.501  -0.088   0.182  N5    VMV  28  
VMV  NA2   N6   N  0  1  N  N  N  -11.396  20.273  13.728   -9.972   0.032   0.215  NA2   VMV  29  
VMV  NA4   N7   N  0  1  N  N  N   -7.473  20.729  11.249   -5.982  -2.421  -0.096  NA4   VMV  30  
VMV  O1    O4   O  0  1  N  N  N   -4.241  15.554  24.474    7.442  -2.432   1.275  O1    VMV  31  
VMV  O2    O5   O  0  1  N  N  N   -4.540  17.556  23.619    5.278  -2.444   1.724  O2    VMV  32  
VMV  H61   H1   H  0  1  N  N  N   -4.432  22.282  14.781   -4.078   1.466  -1.164  H61   VMV  33  
VMV  H82   H2   H  0  1  N  N  N   -8.006  23.282  16.087   -6.364   3.081   1.247  H82   VMV  34  
VMV  H81   H3   H  0  1  N  N  N   -8.051  21.671  16.880   -5.956   3.035  -0.485  H81   VMV  35  
VMV  H92   H4   H  0  1  N  N  N   -6.055  19.707  15.122   -1.868   2.002  -0.241  H92   VMV  36  
VMV  H91   H5   H  0  1  N  N  N   -4.716  19.885  13.938   -2.133   0.880   1.116  H91   VMV  37  
VMV  H161  H6   H  0  0  N  N  N   -3.982  20.203  18.619   -0.672  -1.959  -2.126  H161  VMV  38  
VMV  H171  H7   H  0  0  N  N  N   -4.462  18.476  20.313    1.724  -2.499  -2.106  H171  VMV  39  
VMV  H     H8   H  0  1  N  N  N   -5.339  17.476  21.438    4.165   0.175   0.628  H     VMV  40  
VMV  HA    H9   H  0  1  N  N  N   -6.766  15.927  22.870    6.244  -1.197  -0.896  HA    VMV  41  
VMV  HB2   H10  H  0  1  N  N  N   -5.295  13.798  23.422    6.361   0.751   1.449  HB2   VMV  42  
VMV  HB3   H11  H  0  1  N  N  N   -4.767  13.996  21.717    7.786   0.114   0.593  HB3   VMV  43  
VMV  HG2   H12  H  0  1  N  N  N   -6.982  13.760  20.874    6.938   1.072  -1.531  HG2   VMV  44  
VMV  HG3   H13  H  0  1  N  N  N   -7.724  14.100  22.474    5.513   1.709  -0.675  HG3   VMV  45  
VMV  H1    H14  H  0  1  N  N  N   -6.203  10.554  22.787    7.873   4.516  -0.689  H1    VMV  46  
VMV  H131  H15  H  0  0  N  N  N   -5.406  15.670  17.227    2.406   0.679   0.698  H131  VMV  47  
VMV  H141  H16  H  0  0  N  N  N   -4.921  17.404  15.524    0.010   1.220   0.660  H141  VMV  48  
VMV  H72   H17  H  0  1  N  N  N   -5.875  21.539  16.864   -4.341   1.924   1.845  H72   VMV  49  
VMV  H71   H18  H  0  1  N  N  N   -5.832  23.231  16.263   -3.860   3.193   0.687  H71   VMV  50  
VMV  H101  H19  H  0  0  N  N  N   -3.276  19.708  15.522   -2.445  -0.552  -1.298  H101  VMV  51  
VMV  H2    H20  H  0  1  N  N  N   -5.634  21.422  12.825   -4.157  -0.459   1.055  H2    VMV  52  
VMV  HA21  H21  H  0  0  N  N  N  -11.659  19.909  12.834  -10.442   0.873   0.320  HA21  VMV  53  
VMV  HA22  H22  H  0  0  N  N  N  -11.504  19.562  14.422  -10.471  -0.794   0.120  HA22  VMV  54  
VMV  HA42  H23  H  0  0  N  N  N   -8.108  20.316  10.596   -6.495  -3.239  -0.189  HA42  VMV  55  
VMV  HA41  H24  H  0  0  N  N  N   -7.159  21.611  10.896   -5.012  -2.454  -0.105  HA41  VMV  56  
VMV  H3    H25  H  0  1  N  N  N   -3.668  16.066  25.033    7.559  -3.140   1.923  H3    VMV  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VMV  NA4  C4    SING  N  N   1  
VMV  C4   N3    DOUB  Y  N   2  
VMV  C4   C4A   SING  Y  N   3  
VMV  N3   C2    SING  Y  N   4  
VMV  N5   C4A   SING  N  N   5  
VMV  N5   C6    SING  N  N   6  
VMV  C4A  C8A   DOUB  Y  N   7  
VMV  C2   NA2   SING  N  N   8  
VMV  C2   N1    DOUB  Y  N   9  
VMV  C8A  N1    SING  Y  N  10  
VMV  C8A  C8    SING  N  N  11  
VMV  C6   C9    SING  N  N  12  
VMV  C6   C7    SING  N  N  13  
VMV  C9   N10   SING  N  N  14  
VMV  N10  C15   SING  N  N  15  
VMV  C8   C7    SING  N  N  16  
VMV  C14  C15   DOUB  Y  N  17  
VMV  C14  C13   SING  Y  N  18  
VMV  C15  C16   SING  Y  N  19  
VMV  C13  C12   DOUB  Y  N  20  
VMV  C16  C17   DOUB  Y  N  21  
VMV  C12  C17   SING  Y  N  22  
VMV  C12  C     SING  N  N  23  
VMV  O    C     DOUB  N  N  24  
VMV  C    N     SING  N  N  25  
VMV  N    CA    SING  N  N  26  
VMV  CG   CD    SING  N  N  27  
VMV  CG   CB    SING  N  N  28  
VMV  OE1  CD    DOUB  N  N  29  
VMV  CD   OE2   SING  N  N  30  
VMV  CB   CA    SING  N  N  31  
VMV  CA   CT    SING  N  N  32  
VMV  O2   CT    DOUB  N  N  33  
VMV  CT   O1    SING  N  N  34  
VMV  C6   H61   SING  N  N  35  
VMV  C8   H82   SING  N  N  36  
VMV  C8   H81   SING  N  N  37  
VMV  C9   H92   SING  N  N  38  
VMV  C9   H91   SING  N  N  39  
VMV  C16  H161  SING  N  N  40  
VMV  C17  H171  SING  N  N  41  
VMV  N    H     SING  N  N  42  
VMV  CA   HA    SING  N  N  43  
VMV  CB   HB2   SING  N  N  44  
VMV  CB   HB3   SING  N  N  45  
VMV  CG   HG2   SING  N  N  46  
VMV  CG   HG3   SING  N  N  47  
VMV  OE2  H1    SING  N  N  48  
VMV  C13  H131  SING  N  N  49  
VMV  C14  H141  SING  N  N  50  
VMV  C7   H72   SING  N  N  51  
VMV  C7   H71   SING  N  N  52  
VMV  N10  H101  SING  N  N  53  
VMV  N5   H2    SING  N  N  54  
VMV  NA2  HA21  SING  N  N  55  
VMV  NA2  HA22  SING  N  N  56  
VMV  NA4  HA42  SING  N  N  57  
VMV  NA4  HA41  SING  N  N  58  
VMV  O1   H3    SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VMV  SMILES            ACDLabs               12.01  "c2(N)nc3CCC(CNc1ccc(C(NC(C(O)=O)CCC(O)=O)=O)cc1)Nc3c(n2)N"  
VMV  InChI             InChI                 1.03   "InChI=1S/C20H25N7O5/c21-17-16-13(26-20(22)27-17)6-5-12(24-16)9-23-11-3-1-10(2-4-11)18(30)25-14(19(31)32)7-8-15(28)29/h1-4,12,14,23-24H,5-9H2,(H,25,30)(H,28,29)(H,31,32)(H4,21,22,26,27)/t12-,14-/m0/s1"  
VMV  InChIKey          InChI                 1.03   NJZPEYYRVZHUEO-JSGCOSHPSA-N  
VMV  SMILES_CANONICAL  CACTVS                3.385  "Nc1nc(N)c2N[C@@H](CCc2n1)CNc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O"  
VMV  SMILES            CACTVS                3.385  "Nc1nc(N)c2N[CH](CCc2n1)CNc3ccc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O"  
VMV  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NC[C@@H]2CCc3c(c(nc(n3)N)N)N2"  
VMV  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1C(=O)NC(CCC(=O)O)C(=O)O)NCC2CCc3c(c(nc(n3)N)N)N2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VMV  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[4-({[(6S)-2,4-diamino-5,6,7,8-tetrahydropyrido[3,2-d]pyrimidin-6-yl]methyl}amino)benzene-1-carbonyl]-L-glutamic acid"  
VMV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[[4-[[(6~{S})-2,4-bis(azanyl)-5,6,7,8-tetrahydropyrido[3,2-d]pyrimidin-6-yl]methylamino]phenyl]carbonylamino]pentanedioic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VMV  "Create component"  2020-08-28  RCSB  
VMV  "Initial release"   2021-04-21  RCSB  
##
