data_2RW
# 
_chem_comp.id                                    2RW 
_chem_comp.name                                  "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S)-3-hydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H23 N5 O12 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-01-14 
_chem_comp.pdbx_modified_date                    2014-04-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        527.317 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2RW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4O9M 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2RW N1    N1    N 0 1 Y N N -4.713 -0.921 44.809 7.812  -2.989 0.251  N1    2RW 1  
2RW C2    C2    C 0 1 Y N N -4.160 -0.839 43.589 7.638  -2.080 1.193  C2    2RW 2  
2RW N3    N3    N 0 1 Y N N -3.157 -1.655 43.198 6.604  -1.265 1.206  N3    2RW 3  
2RW C4    C4    C 0 1 Y N N -2.669 -2.597 44.030 5.679  -1.329 0.254  C4    2RW 4  
2RW C5    C5    C 0 1 Y N N -3.257 -2.697 45.353 5.819  -2.279 -0.771 C5    2RW 5  
2RW C6    C6    C 0 1 Y N N -4.284 -1.829 45.688 6.939  -3.127 -0.742 C6    2RW 6  
2RW N6    N6    N 0 1 N N N -4.883 -1.900 46.977 7.130  -4.083 -1.724 N6    2RW 7  
2RW N7    N7    N 0 1 Y N N -2.495 -3.822 45.995 4.756  -2.133 -1.599 N7    2RW 8  
2RW C8    C8    C 0 1 Y N N -1.594 -4.261 45.084 3.992  -1.176 -1.157 C8    2RW 9  
2RW N9    N9    N 0 1 Y N N -1.762 -3.537 44.054 4.519  -0.648 -0.016 N9    2RW 10 
2RW "C1'" "C1'" C 0 1 N N R -0.955 -3.788 42.945 3.950  0.444  0.776  "C1'" 2RW 11 
2RW "C2'" "C2'" C 0 1 N N R -0.381 -5.155 43.019 4.579  1.801  0.366  "C2'" 2RW 12 
2RW "O2'" "O2'" O 0 1 N N N 1.067  -5.118 43.239 5.789  2.040  1.087  "O2'" 2RW 13 
2RW "C3'" "C3'" C 0 1 N N S -0.736 -5.867 41.794 3.479  2.807  0.784  "C3'" 2RW 14 
2RW "O3'" "O3'" O 0 1 N N N 0.374  -5.977 40.853 3.781  3.378  2.058  "O3'" 2RW 15 
2RW "O4'" "O4'" O 0 1 N N N -1.781 -3.698 41.680 2.549  0.617  0.472  "O4'" 2RW 16 
2RW "C4'" "C4'" C 0 1 N N R -1.856 -5.119 41.181 2.197  1.956  0.861  "C4'" 2RW 17 
2RW "C5'" "C5'" C 0 1 N N N -3.154 -5.765 41.520 1.142  2.515  -0.095 "C5'" 2RW 18 
2RW "O5'" "O5'" O 0 1 N N N -3.922 -4.990 42.443 -0.075 1.781  0.056  "O5'" 2RW 19 
2RW PA    PA    P 0 1 N N N -4.992 -5.735 43.376 -1.403 2.100  -0.797 PA    2RW 20 
2RW O1A   O1A   O 0 1 N N N -4.749 -5.399 44.834 -1.126 1.798  -2.354 O1A   2RW 21 
2RW O2A   O2A   O 0 1 N N N -4.829 -7.234 43.207 -1.768 3.524  -0.628 O2A   2RW 22 
2RW O3A   O3A   O 0 1 N N N -6.469 -5.238 42.999 -2.610 1.171  -0.277 O3A   2RW 23 
2RW PB    PB    P 0 1 N N N -7.701 -6.115 42.482 -4.208 1.200  -0.473 PB    2RW 24 
2RW O1B   O1B   O 0 1 N N N -8.948 -5.260 42.574 -4.526 1.452  -1.897 O1B   2RW 25 
2RW O2B   O2B   O 0 1 N N N -7.894 -7.332 43.362 -4.839 2.372  0.433  O2B   2RW 26 
2RW O5D   O5D   O 0 1 N N N -7.450 -6.564 40.965 -4.829 -0.217 -0.027 O5D   2RW 27 
2RW C5D   C5D   C 0 1 N N N -6.523 -7.608 40.695 -6.212 -0.543 -0.181 C5D   2RW 28 
2RW O4D   O4D   O 0 1 N N N -7.415 -8.104 38.495 -6.255 -2.012 1.770  O4D   2RW 29 
2RW C1D   C1D   C 0 1 N N N -7.578 -7.145 37.357 -6.971 -3.185 2.215  C1D   2RW 30 
2RW C2D   C2D   C 0 1 N N N -6.697 -5.910 37.768 -8.286 -3.176 1.404  C2D   2RW 31 
2RW O3D   O3D   O 0 1 N N N -4.521 -6.860 37.838 -8.098 -3.148 -1.033 O3D   2RW 32 
2RW C3D   C3D   C 0 1 N N S -5.671 -6.531 38.641 -7.944 -2.351 0.143  C3D   2RW 33 
2RW C4D   C4D   C 0 1 N N R -6.226 -7.767 39.196 -6.463 -1.959 0.342  C4D   2RW 34 
2RW H1    H1    H 0 1 N N N -4.529 -0.096 42.897 8.372  -2.002 1.981  H1    2RW 35 
2RW H2    H2    H 0 1 N N N -5.598 -1.205 47.051 7.907  -4.662 -1.694 H2    2RW 36 
2RW H3    H3    H 0 1 N N N -5.284 -2.807 47.109 6.486  -4.174 -2.444 H3    2RW 37 
2RW H4    H4    H 0 1 N N N -0.880 -5.062 45.208 3.076  -0.849 -1.626 H4    2RW 38 
2RW H5    H5    H 0 1 N N N -0.137 -3.054 42.889 4.094  0.261  1.841  H5    2RW 39 
2RW H6    H6    H 0 1 N N N -0.847 -5.675 43.869 4.754  1.839  -0.709 H6    2RW 40 
2RW H7    H7    H 0 1 N N N 1.254  -4.648 44.043 6.220  2.877  0.865  H7    2RW 41 
2RW H8    H8    H 0 1 N N N -1.086 -6.877 42.055 3.373  3.589  0.032  H8    2RW 42 
2RW H9    H9    H 0 1 N N N 1.086  -6.459 41.257 4.609  3.878  2.079  H9    2RW 43 
2RW H10   H10   H 0 1 N N N -1.732 -5.117 40.088 1.811  1.956  1.880  H10   2RW 44 
2RW H11   H11   H 0 1 N N N -3.737 -5.894 40.596 0.964  3.566  0.134  H11   2RW 45 
2RW H12   H12   H 0 1 N N N -2.953 -6.750 41.967 1.497  2.423  -1.122 H12   2RW 46 
2RW H13   H13   H 0 1 N N N -4.550 -6.194 45.314 -0.881 0.881  -2.539 H13   2RW 47 
2RW H14   H14   H 0 1 N N N -8.748 -7.292 43.775 -4.670 2.272  1.380  H14   2RW 48 
2RW H15   H15   H 0 1 N N N -6.939 -8.554 41.073 -6.818 0.165  0.385  H15   2RW 49 
2RW H16   H16   H 0 1 N N N -5.581 -7.386 41.218 -6.483 -0.492 -1.235 H16   2RW 50 
2RW H17   H17   H 0 1 N N N -8.632 -6.852 37.241 -6.397 -4.086 1.997  H17   2RW 51 
2RW H18   H18   H 0 1 N N N -7.215 -7.588 36.418 -7.183 -3.118 3.282  H18   2RW 52 
2RW H19   H19   H 0 1 N N N -6.238 -5.437 36.887 -8.573 -4.191 1.130  H19   2RW 53 
2RW H20   H20   H 0 1 N N N -7.289 -5.163 38.318 -9.082 -2.694 1.972  H20   2RW 54 
2RW H21   H21   H 0 1 N N N -3.855 -7.259 38.386 -8.998 -3.471 -1.173 H21   2RW 55 
2RW H22   H22   H 0 1 N N N -5.395 -5.839 39.450 -8.572 -1.462 0.087  H22   2RW 56 
2RW H23   H23   H 0 1 N N N -5.488 -8.574 39.079 -5.811 -2.672 -0.163 H23   2RW 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2RW C1D   C2D   SING N N 1  
2RW C1D   O4D   SING N N 2  
2RW C2D   C3D   SING N N 3  
2RW O3D   C3D   SING N N 4  
2RW O4D   C4D   SING N N 5  
2RW C3D   C4D   SING N N 6  
2RW C4D   C5D   SING N N 7  
2RW C5D   O5D   SING N N 8  
2RW "O3'" "C3'" SING N N 9  
2RW O5D   PB    SING N N 10 
2RW "C4'" "C5'" SING N N 11 
2RW "C4'" "O4'" SING N N 12 
2RW "C4'" "C3'" SING N N 13 
2RW "C5'" "O5'" SING N N 14 
2RW "O4'" "C1'" SING N N 15 
2RW "C3'" "C2'" SING N N 16 
2RW "O5'" PA    SING N N 17 
2RW PB    O1B   DOUB N N 18 
2RW PB    O3A   SING N N 19 
2RW PB    O2B   SING N N 20 
2RW "C1'" "C2'" SING N N 21 
2RW "C1'" N9    SING N N 22 
2RW O3A   PA    SING N N 23 
2RW "C2'" "O2'" SING N N 24 
2RW N3    C2    DOUB Y N 25 
2RW N3    C4    SING Y N 26 
2RW O2A   PA    DOUB N N 27 
2RW PA    O1A   SING N N 28 
2RW C2    N1    SING Y N 29 
2RW C4    N9    SING Y N 30 
2RW C4    C5    DOUB Y N 31 
2RW N9    C8    SING Y N 32 
2RW N1    C6    DOUB Y N 33 
2RW C8    N7    DOUB Y N 34 
2RW C5    C6    SING Y N 35 
2RW C5    N7    SING Y N 36 
2RW C6    N6    SING N N 37 
2RW C2    H1    SING N N 38 
2RW N6    H2    SING N N 39 
2RW N6    H3    SING N N 40 
2RW C8    H4    SING N N 41 
2RW "C1'" H5    SING N N 42 
2RW "C2'" H6    SING N N 43 
2RW "O2'" H7    SING N N 44 
2RW "C3'" H8    SING N N 45 
2RW "O3'" H9    SING N N 46 
2RW "C4'" H10   SING N N 47 
2RW "C5'" H11   SING N N 48 
2RW "C5'" H12   SING N N 49 
2RW O1A   H13   SING N N 50 
2RW O2B   H14   SING N N 51 
2RW C5D   H15   SING N N 52 
2RW C5D   H16   SING N N 53 
2RW C1D   H17   SING N N 54 
2RW C1D   H18   SING N N 55 
2RW C2D   H19   SING N N 56 
2RW C2D   H20   SING N N 57 
2RW O3D   H21   SING N N 58 
2RW C3D   H22   SING N N 59 
2RW C4D   H23   SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2RW SMILES           ACDLabs              12.01 "O=P(OCC1OCCC1O)(O)OP(=O)(O)OCC4OC(n3cnc2c(ncnc23)N)C(O)C4O" 
2RW InChI            InChI                1.03  
"InChI=1S/C15H23N5O12P2/c16-13-10-14(18-5-17-13)20(6-19-10)15-12(23)11(22)9(31-15)4-30-34(26,27)32-33(24,25)29-3-8-7(21)1-2-28-8/h5-9,11-12,15,21-23H,1-4H2,(H,24,25)(H,26,27)(H2,16,17,18)/t7-,8+,9+,11+,12+,15+/m0/s1" 
2RW InChIKey         InChI                1.03  ZJGNPGFGXQKXSY-IBCGMDAMSA-N 
2RW SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4OCC[C@@H]4O)[C@@H](O)[C@H]3O" 
2RW SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4OCC[CH]4O)[CH](O)[CH]3O" 
2RW SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H](CCO4)O)O)O)N" 
2RW SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(CCO4)O)O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2RW "SYSTEMATIC NAME" ACDLabs              12.01 "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S)-3-hydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" 
2RW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S)-3-oxidanyloxolan-2-yl]methyl hydrogen phosphate"                    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2RW "Create component" 2014-01-14 RCSB 
2RW "Initial release"  2014-04-30 RCSB 
# 
