data_AVW
#

_chem_comp.id                                   AVW
_chem_comp.name                                 "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3R,4S)-4-fluoro-3-hydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H22 F N5 O12 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "ribosyl-2-fluoro-deoxy-adenosine diphosphate ribose; ribo-2'F-ADPR"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-07-14
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       545.307
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AVW
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3I9N
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AVW  PA      AP    P  0  1  N  N  N   4.402   3.645   6.515   1.013  -2.171  -0.768  AP    AVW   1  
AVW  PN      NP    P  0  1  N  N  N   3.717   4.600   4.000   3.791  -1.203  -1.132  NP    AVW   2  
AVW  N1A     AN1   N  0  1  Y  N  N  11.026   2.470   7.547  -8.254   2.900  -0.043  AN1   AVW   3  
AVW  O1A     AO1   O  0  1  N  N  N   3.912   2.234   6.801   1.465  -3.471  -0.223  AO1   AVW   4  
AVW  O1N     NO1   O  0  1  N  N  N   3.490   6.018   3.637   4.341  -2.511  -0.710  NO1   AVW   5  
AVW  C2A     AC2   C  0  1  Y  N  N   9.687   2.484   7.326  -7.903   2.339   1.100  AC2   AVW   6  
AVW  O2A     AO2   O  0  1  N  N  N   4.567   4.455   7.773   0.519  -2.368  -2.287  AO2   AVW   7  
AVW  O2N     NO2   O  0  1  N  N  N   5.089   4.003   3.722   3.944  -1.045  -2.727  NO2   AVW   8  
AVW  O3      O3    O  0  1  N  N  N   3.362   4.489   5.550   2.234  -1.122  -0.732  O3    AVW   9  
AVW  N3A     AN3   N  0  1  Y  N  N   9.170   2.144   6.111  -6.833   1.581   1.216  AN3   AVW  10  
AVW  C4A     AC4   C  0  1  Y  N  N   9.975   1.761   5.054  -6.051   1.348   0.166  AC4   AVW  11  
AVW  C5A     AC5   C  0  1  Y  N  N  11.361   1.742   5.270  -6.382   1.921  -1.073  AC5   AVW  12  
AVW  C6A     AC6   C  0  1  Y  N  N  11.883   2.099   6.532  -7.535   2.723  -1.146  AC6   AVW  13  
AVW  N6A     AN6   N  0  1  N  N  N  13.236   2.077   6.713  -7.910   3.315  -2.339  AN6   AVW  14  
AVW  N7A     AN7   N  0  1  Y  N  N  11.935   1.350   4.114  -5.436   1.531  -1.959  AN7   AVW  15  
AVW  C8A     AC8   C  0  1  Y  N  N  10.947   1.141   3.204  -4.566   0.772  -1.358  AC8   AVW  16  
AVW  N9A     AN9   N  0  1  Y  N  N   9.736   1.375   3.760  -4.902   0.629  -0.045  AN9   AVW  17  
AVW  "C1'A"  AC1*  C  0  0  N  N  R   8.392   1.225   3.056  -4.170  -0.149   0.958  AC1*  AVW  18  
AVW  "C1'N"  NC1*  C  0  0  N  N  N   0.880   2.985   0.080   7.164   2.022   2.437  NC1*  AVW  19  
AVW  "C2'A"  AC2*  C  0  0  N  N  R   7.669  -0.130   3.330  -4.771  -1.571   1.091  AC2*  AVW  20  
AVW  "O2'A"  AO2*  O  0  0  N  N  N   7.340  -0.924   2.162  -5.857  -1.582   2.020  AO2*  AVW  21  
AVW  "C2'N"  NC2*  C  0  0  N  N  S  -0.550   3.054   0.526   8.317   2.365   1.474  NC2*  AVW  22  
AVW  "F2'N"  NF2*  F  0  0  N  N  N  -1.295   3.363  -0.584   8.350   3.741   1.222  NF2*  AVW  23  
AVW  "C3'A"  AC3*  C  0  0  N  N  S   6.371   0.187   4.056  -3.569  -2.381   1.636  AC3*  AVW  24  
AVW  "O3'A"  AO3*  O  0  0  N  N  N   5.255  -0.409   3.357  -3.661  -2.518   3.056  AO3*  AVW  25  
AVW  "C3'N"  NC3*  C  0  0  N  N  R  -0.571   4.120   1.611   7.976   1.585   0.181  NC3*  AVW  26  
AVW  "O3'N"  NO3*  O  0  0  N  N  N  -1.276   5.213   1.208   8.246   2.376  -0.978  NO3*  AVW  27  
AVW  "C4'A"  AC4*  C  0  0  N  N  R   6.315   1.720   4.106  -2.339  -1.536   1.254  AC4*  AVW  28  
AVW  "O4'A"  AO4*  O  0  0  N  N  N   7.494   2.267   3.486  -2.816  -0.395   0.521  AO4*  AVW  29  
AVW  "C4'N"  NC4*  C  0  0  N  N  R   0.854   4.601   1.830   6.454   1.340   0.341  NC4*  AVW  30  
AVW  "O4'N"  NO4*  O  0  0  N  N  N   1.599   4.026   0.737   6.299   1.098   1.756  NO4*  AVW  31  
AVW  "C5'A"  AC5*  C  0  0  N  N  N   6.332   2.248   5.534  -1.394  -2.360   0.377  AC5*  AVW  32  
AVW  "O5'A"  AO5*  O  0  0  N  N  N   5.814   3.581   5.637  -0.204  -1.610   0.124  AO5*  AVW  33  
AVW  "C5'N"  NC5*  C  0  0  N  N  N   1.316   3.952   3.127   6.017   0.116  -0.466  NC5*  AVW  34  
AVW  "O5'N"  NO5*  O  0  0  N  N  N   2.727   3.652   3.143   4.597  -0.019  -0.396  NO5*  AVW  35  
AVW  HC2     HC2   H  0  1  N  N  N   9.020   2.769   8.126  -8.517   2.509   1.972  HC2   AVW  36  
AVW  HAO2    HAO2  H  0  0  N  N  N   4.330   3.925   8.525   0.208  -1.555  -2.708  HAO2  AVW  37  
AVW  HNO2    HNO2  H  0  0  N  N  N   5.648   4.663   3.329   3.603  -0.209  -3.074  HNO2  AVW  38  
AVW  HAN6    HAN6  H  0  0  N  N  N  13.452   2.360   7.647  -7.377   3.178  -3.138  HAN6  AVW  39  
AVW  HANA    HANA  H  0  0  N  N  N  13.578   1.150   6.558  -8.708   3.866  -2.377  HANA  AVW  40  
AVW  HC8     HC8   H  0  1  N  N  N  11.106   0.832   2.182  -3.705   0.322  -1.830  HC8   AVW  41  
AVW  "HC1'"  HC1*  H  0  0  N  N  N   8.627   1.279   1.983  -4.178   0.363   1.920  HC1*  AVW  42  
AVW  HC1A    HC1A  H  0  0  N  N  N   1.309   2.007   0.345   7.562   1.559   3.341  HC1A  AVW  43  
AVW  HC1B    HC1B  H  0  0  N  N  N   0.940   3.118  -1.010   6.612   2.926   2.693  HC1B  AVW  44  
AVW  "HC2'"  HC2*  H  0  0  N  N  N   8.379  -0.739   3.909  -5.088  -1.952   0.120  HC2*  AVW  45  
AVW  "HO2'"  HO2*  H  0  0  N  N  N   6.905  -1.724   2.434  -6.266  -2.450   2.137  HO2*  AVW  46  
AVW  HC2A    HC2A  H  0  0  N  N  N  -0.969   2.125   0.941   9.269   2.028   1.883  HC2A  AVW  47  
AVW  "HC3'"  HC3*  H  0  0  N  N  N   6.322  -0.227   5.074  -3.522  -3.361   1.160  HC3*  AVW  48  
AVW  "HO3'"  HO3*  H  0  0  N  N  N   4.448  -0.207   3.816  -4.449  -2.992   3.355  HO3*  AVW  49  
AVW  HC3A    HC3A  H  0  0  N  N  N  -1.023   3.683   2.514   8.520   0.641   0.141  HC3A  AVW  50  
AVW  HO3A    HO3A  H  0  0  N  N  N  -1.275   5.864   1.900   9.174   2.632  -1.072  HO3A  AVW  51  
AVW  "HC4'"  HC4*  H  0  0  N  N  N   5.385   2.012   3.596  -1.819  -1.210   2.155  HC4*  AVW  52  
AVW  HC4A    HC4A  H  0  0  N  N  N   0.967   5.694   1.878   5.889   2.221   0.036  HC4A  AVW  53  
AVW  "HC5'"  HC5*  H  0  0  N  N  N   5.713   1.586   6.157  -1.137  -3.286   0.890  HC5*  AVW  54  
AVW  HC5A    HC5A  H  0  0  N  N  N   7.372   2.251   5.891  -1.885  -2.592  -0.568  HC5A  AVW  55  
AVW  HC5B    HC5B  H  0  0  N  N  N   1.102   4.645   3.954   6.319   0.240  -1.506  HC5B  AVW  56  
AVW  HC5C    HC5C  H  0  0  N  N  N   0.763   3.010   3.257   6.488  -0.777  -0.055  HC5C  AVW  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AVW  O3      PA      SING  N  N   1  
AVW  "O5'A"  PA      SING  N  N   2  
AVW  PA      O1A     DOUB  N  N   3  
AVW  PA      O2A     SING  N  N   4  
AVW  "O5'N"  PN      SING  N  N   5  
AVW  O1N     PN      DOUB  N  N   6  
AVW  O2N     PN      SING  N  N   7  
AVW  PN      O3      SING  N  N   8  
AVW  C6A     N1A     DOUB  Y  N   9  
AVW  C2A     N1A     SING  Y  N  10  
AVW  N3A     C2A     DOUB  Y  N  11  
AVW  C2A     HC2     SING  N  N  12  
AVW  O2A     HAO2    SING  N  N  13  
AVW  O2N     HNO2    SING  N  N  14  
AVW  C4A     N3A     SING  Y  N  15  
AVW  N9A     C4A     SING  Y  N  16  
AVW  C4A     C5A     DOUB  Y  N  17  
AVW  N7A     C5A     SING  Y  N  18  
AVW  C5A     C6A     SING  Y  N  19  
AVW  C6A     N6A     SING  N  N  20  
AVW  N6A     HAN6    SING  N  N  21  
AVW  N6A     HANA    SING  N  N  22  
AVW  C8A     N7A     DOUB  Y  N  23  
AVW  C8A     N9A     SING  Y  N  24  
AVW  C8A     HC8     SING  N  N  25  
AVW  "C1'A"  N9A     SING  N  N  26  
AVW  "C1'A"  "C2'A"  SING  N  N  27  
AVW  "C1'A"  "O4'A"  SING  N  N  28  
AVW  "C1'A"  "HC1'"  SING  N  N  29  
AVW  "C1'N"  "C2'N"  SING  N  N  30  
AVW  "C1'N"  "O4'N"  SING  N  N  31  
AVW  "C1'N"  HC1A    SING  N  N  32  
AVW  "C1'N"  HC1B    SING  N  N  33  
AVW  "O2'A"  "C2'A"  SING  N  N  34  
AVW  "C2'A"  "C3'A"  SING  N  N  35  
AVW  "C2'A"  "HC2'"  SING  N  N  36  
AVW  "O2'A"  "HO2'"  SING  N  N  37  
AVW  "F2'N"  "C2'N"  SING  N  N  38  
AVW  "C2'N"  "C3'N"  SING  N  N  39  
AVW  "C2'N"  HC2A    SING  N  N  40  
AVW  "O3'A"  "C3'A"  SING  N  N  41  
AVW  "C3'A"  "C4'A"  SING  N  N  42  
AVW  "C3'A"  "HC3'"  SING  N  N  43  
AVW  "O3'A"  "HO3'"  SING  N  N  44  
AVW  "O3'N"  "C3'N"  SING  N  N  45  
AVW  "C3'N"  "C4'N"  SING  N  N  46  
AVW  "C3'N"  HC3A    SING  N  N  47  
AVW  "O3'N"  HO3A    SING  N  N  48  
AVW  "O4'A"  "C4'A"  SING  N  N  49  
AVW  "C4'A"  "C5'A"  SING  N  N  50  
AVW  "C4'A"  "HC4'"  SING  N  N  51  
AVW  "O4'N"  "C4'N"  SING  N  N  52  
AVW  "C4'N"  "C5'N"  SING  N  N  53  
AVW  "C4'N"  HC4A    SING  N  N  54  
AVW  "C5'A"  "O5'A"  SING  N  N  55  
AVW  "C5'A"  "HC5'"  SING  N  N  56  
AVW  "C5'A"  HC5A    SING  N  N  57  
AVW  "C5'N"  "O5'N"  SING  N  N  58  
AVW  "C5'N"  HC5B    SING  N  N  59  
AVW  "C5'N"  HC5C    SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AVW  SMILES            ACDLabs               11.02  "FC1C(O)C(OC1)COP(=O)(O)OP(=O)(O)OCC4OC(n3cnc2c(ncnc23)N)C(O)C4O"  
AVW  SMILES_CANONICAL  CACTVS                3.352  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4OC[C@H](F)[C@@H]4O)[C@@H](O)[C@H]3O"  
AVW  SMILES            CACTVS                3.352  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4OC[CH](F)[CH]4O)[CH](O)[CH]3O"  
AVW  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H](CO4)F)O)O)O)N"  
AVW  SMILES            "OpenEye OEToolkits"  1.7.0  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(CO4)F)O)O)O)N"  
AVW  InChI             InChI                 1.03   "InChI=1S/C15H22FN5O12P2/c16-6-1-29-7(10(6)22)2-30-34(25,26)33-35(27,28)31-3-8-11(23)12(24)15(32-8)21-5-20-9-13(17)18-4-19-14(9)21/h4-8,10-12,15,22-24H,1-3H2,(H,25,26)(H,27,28)(H2,17,18,19)/t6-,7+,8+,10-,11+,12+,15+/m0/s1"  
AVW  InChIKey          InChI                 1.03   GOCJJDZHXMDJEZ-AOOZFPJJSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AVW  "SYSTEMATIC NAME"  ACDLabs               11.02  "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3R,4S)-4-fluoro-3-hydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)"  
AVW  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3R,4S)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AVW  "Create component"      2009-07-14  PDBJ  
AVW  "Modify aromatic_flag"  2011-06-04  RCSB  
AVW  "Modify descriptor"     2011-06-04  RCSB  
AVW  "Modify synonyms"       2021-03-13  RCSB  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  AVW  "ribosyl-2-fluoro-deoxy-adenosine diphosphate ribose"  PDB  ?  
2  AVW  "ribo-2'F-ADPR"                                        PDB  ?  
##
