data_TPW
#

_chem_comp.id                                   TPW
_chem_comp.name                                 "2-{4-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-METHYLTHIOPHEN-2-YL}ETHYL TRIHYDROGEN DIPHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H19 N3 O7 P2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        3-DEAZA-THDP
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-02-26
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       423.318
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TPW
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TPW  C2A     C2A   C  0  1  N  N  N  68.400  -4.148  -4.231  -2.236   5.621   5.026  C2A     TPW   1  
TPW  C35     C35   C  0  1  N  N  N  74.095  -4.281  -3.221   1.552   5.167   0.843  C35     TPW   2  
TPW  C2      C2    C  0  1  Y  N  N  75.048  -6.300  -2.042   0.525   4.230  -1.259  C2      TPW   3  
TPW  S1      S1    S  0  1  Y  N  N  75.312  -6.998  -0.474   0.387   2.772  -2.147  S1      TPW   4  
TPW  C5      C5    C  0  1  Y  N  N  74.561  -5.609   0.240   1.327   1.942  -0.996  C5      TPW   5  
TPW  C4      C4    C  0  1  Y  N  N  74.140  -4.679  -0.706   1.740   2.731   0.037  C4      TPW   6  
TPW  C4A     C4A   C  0  1  N  N  N  73.455  -3.388  -0.339   2.570   2.264   1.175  C4A     TPW   7  
TPW  C5A     C5A   C  0  1  N  N  N  74.422  -5.590   1.742   1.601   0.481  -1.216  C5A     TPW   8  
TPW  C5B     C5B   C  0  1  N  N  N  75.559  -6.247   2.522   0.544  -0.421  -0.587  C5B     TPW   9  
TPW  O5G     O5G   O  0  1  N  N  N  75.349  -6.015   3.897  -0.719  -0.160  -1.174  O5G     TPW  10  
TPW  P1      P1    P  0  1  N  N  S  74.664  -7.131   4.831  -2.024  -0.984  -0.686  P1      TPW  11  
TPW  O11     O11   O  0  1  N  N  N  75.735  -8.342   4.845  -2.062  -0.773   0.916  O11     TPW  12  
TPW  O12     O12   O  0  1  N  N  N  73.387  -7.688   4.259  -1.602  -2.538  -0.845  O12     TPW  13  
TPW  O13     O13   O  0  1  N  N  N  74.459  -6.519   6.185  -3.299  -0.614  -1.386  O13     TPW  14  
TPW  P2      P2    P  0  1  N  N  N  76.966  -8.521   5.870  -2.309   0.554   1.805  P2      TPW  15  
TPW  O21     O21   O  0  1  N  N  N  78.236  -8.610   5.067  -2.370  -0.022   3.314  O21     TPW  16  
TPW  O22     O22   O  0  1  N  N  N  77.012  -7.368   6.836  -1.312   1.652   1.580  O22     TPW  17  
TPW  O23     O23   O  0  1  N  N  N  76.802  -9.825   6.612  -3.845   0.938   1.484  O23     TPW  18  
TPW  "N1'"   N1*   N  0  1  Y  N  N  70.517  -3.054  -3.528  -0.188   4.701   4.139  "N1'"   TPW  19  
TPW  "C2'"   C2*   C  0  1  Y  N  N  69.869  -4.182  -3.971  -1.243   5.508   3.920  "C2'"   TPW  20  
TPW  "N3'"   N3*   N  0  1  Y  N  N  70.578  -5.348  -4.167  -1.498   6.224   2.808  "N3'"   TPW  21  
TPW  "C4'"   C4*   C  0  1  Y  N  N  71.946  -5.406  -3.940  -0.580   6.098   1.827  "C4'"   TPW  22  
TPW  "N4'"   N4*   N  0  1  N  N  N  72.617  -6.556  -4.143  -0.784   6.822   0.627  "N4'"   TPW  23  
TPW  "C5'"   C5*   C  0  1  Y  N  N  72.602  -4.265  -3.493   0.522   5.306   1.950  "C5'"   TPW  24  
TPW  "C6'"   C6*   C  0  1  Y  N  N  71.878  -3.090  -3.294   0.690   4.621   3.117  "C6'"   TPW  25  
TPW  C3      C3    C  0  1  Y  N  N  74.421  -5.077  -1.981   1.273   4.069  -0.113  C3      TPW  26  
TPW  H2A1    1H2A  H  0  0  N  N  N  68.188  -3.317  -4.944  -3.051   6.298   4.742  H2A1    TPW  27  
TPW  H2A2    2H2A  H  0  0  N  N  N  67.888  -3.787  -3.309  -2.668   4.643   5.276  H2A2    TPW  28  
TPW  H2A3    3H2A  H  0  0  N  N  N  67.874  -5.063  -4.590  -1.769   6.005   5.943  H2A3    TPW  29  
TPW  H351    1H35  H  0  0  N  N  N  74.511  -3.248  -3.164   1.635   6.138   0.317  H351    TPW  30  
TPW  H352    2H35  H  0  0  N  N  N  74.667  -4.649  -4.105   2.550   5.043   1.307  H352    TPW  31  
TPW  H2      H2    H  0  1  N  N  N  75.277  -6.631  -3.069   0.050   5.131  -1.620  H2      TPW  32  
TPW  H5A1    1H5A  H  0  0  N  N  N  73.447  -6.042   2.039   1.665   0.278  -2.293  H5A1    TPW  33  
TPW  H5A2    2H5A  H  0  0  N  N  N  74.273  -4.543   2.097   2.582   0.233  -0.791  H5A2    TPW  34  
TPW  H4A1    1H4A  H  0  0  N  N  N  72.494  -3.361  -0.904   3.175   3.088   1.580  H4A1    TPW  35  
TPW  H4A2    2H4A  H  0  0  N  N  N  74.043  -2.566  -0.811   1.951   1.862   1.991  H4A2    TPW  36  
TPW  H4A3    3H4A  H  0  0  N  N  N  73.225  -3.063   0.702   3.253   1.454   0.875  H4A3    TPW  37  
TPW  H5B1    1H5B  H  0  0  N  N  N  76.565  -5.909   2.179   0.792  -1.470  -0.777  H5B1    TPW  38  
TPW  H5B2    2H5B  H  0  0  N  N  N  75.673  -7.330   2.283   0.469  -0.267   0.495  H5B2    TPW  39  
TPW  H12     H12   H  0  1  N  N  N  72.982  -8.347   4.811  -1.644  -2.953  -1.733  H12     TPW  40  
TPW  H21     H21   H  0  1  N  N  N  78.962  -8.715   5.671  -2.427   0.610   4.062  H21     TPW  41  
TPW  H23     H23   H  0  1  N  N  N  77.528  -9.930   7.216  -4.215   1.768   1.854  H23     TPW  42  
TPW  "H6'"   H6*   H  0  1  N  N  N  72.389  -2.176  -2.947   1.540   3.970   3.297  "H6'"   TPW  43  
TPW  "H4'1"  1H4*  H  0  0  N  N  N  73.111  -6.791  -3.282  -1.717   7.022   0.338  "H4'1"  TPW  44  
TPW  "H4'2"  2H4*  H  0  0  N  N  N  72.136  -7.393  -4.471   0.003   7.033   0.052  "H4'2"  TPW  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TPW  C2     S1      SING  Y  N   1  
TPW  S1     C5      SING  Y  N   2  
TPW  C5     C4      DOUB  Y  N   3  
TPW  C4     C4A     SING  N  N   4  
TPW  C5     C5A     SING  N  N   5  
TPW  C5A    C5B     SING  N  N   6  
TPW  C5B    O5G     SING  N  N   7  
TPW  O5G    P1      SING  N  N   8  
TPW  P1     O11     SING  N  N   9  
TPW  P1     O12     SING  N  N  10  
TPW  P1     O13     DOUB  N  N  11  
TPW  O11    P2      SING  N  N  12  
TPW  P2     O21     SING  N  N  13  
TPW  P2     O22     DOUB  N  N  14  
TPW  P2     O23     SING  N  N  15  
TPW  C2A    "C2'"   SING  N  N  16  
TPW  "N1'"  "C2'"   SING  Y  N  17  
TPW  "C2'"  "N3'"   DOUB  Y  N  18  
TPW  "N3'"  "C4'"   SING  Y  N  19  
TPW  "C4'"  "N4'"   SING  N  N  20  
TPW  C35    "C5'"   SING  N  N  21  
TPW  "C4'"  "C5'"   DOUB  Y  N  22  
TPW  "N1'"  "C6'"   DOUB  Y  N  23  
TPW  "C5'"  "C6'"   SING  Y  N  24  
TPW  C35    C3      SING  N  N  25  
TPW  C2     C3      DOUB  Y  N  26  
TPW  C4     C3      SING  Y  N  27  
TPW  C2A    H2A1    SING  N  N  28  
TPW  C2A    H2A2    SING  N  N  29  
TPW  C2A    H2A3    SING  N  N  30  
TPW  C35    H351    SING  N  N  31  
TPW  C35    H352    SING  N  N  32  
TPW  C2     H2      SING  N  N  33  
TPW  C5A    H5A1    SING  N  N  34  
TPW  C5A    H5A2    SING  N  N  35  
TPW  C4A    H4A1    SING  N  N  36  
TPW  C4A    H4A2    SING  N  N  37  
TPW  C4A    H4A3    SING  N  N  38  
TPW  C5B    H5B1    SING  N  N  39  
TPW  C5B    H5B2    SING  N  N  40  
TPW  O12    H12     SING  N  N  41  
TPW  O21    H21     SING  N  N  42  
TPW  O23    H23     SING  N  N  43  
TPW  "C6'"  "H6'"   SING  N  N  44  
TPW  "N4'"  "H4'1"  SING  N  N  45  
TPW  "N4'"  "H4'2"  SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TPW  SMILES            ACDLabs               10.04  "O=P(O)(O)OP(=O)(O)OCCc1scc(c1C)Cc2c(nc(nc2)C)N"  
TPW  SMILES_CANONICAL  CACTVS                3.341  "Cc1ncc(Cc2csc(CCO[P@](O)(=O)O[P](O)(O)=O)c2C)c(N)n1"  
TPW  SMILES            CACTVS                3.341  "Cc1ncc(Cc2csc(CCO[P](O)(=O)O[P](O)(O)=O)c2C)c(N)n1"  
TPW  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1c(csc1CCO[P@@](=O)(O)OP(=O)(O)O)Cc2cnc(nc2N)C"  
TPW  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1c(csc1CCOP(=O)(O)OP(=O)(O)O)Cc2cnc(nc2N)C"  
TPW  InChI             InChI                 1.03   "InChI=1S/C13H19N3O7P2S/c1-8-11(5-10-6-15-9(2)16-13(10)14)7-26-12(8)3-4-22-25(20,21)23-24(17,18)19/h6-7H,3-5H2,1-2H3,(H,20,21)(H2,14,15,16)(H2,17,18,19)"  
TPW  InChIKey          InChI                 1.03   IOGGWTLVIZLGGZ-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TPW  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-3-methylthiophen-2-yl}ethyl trihydrogen diphosphate"  
TPW  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-[4-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-3-methyl-thiophen-2-yl]ethyl phosphono hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TPW  "Create component"   2007-02-26  EBI   
TPW  "Modify descriptor"  2011-06-04  RCSB  
TPW  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     TPW
_pdbx_chem_comp_synonyms.name        3-DEAZA-THDP
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
