data_WIW
# 
_chem_comp.id                                    WIW 
_chem_comp.name                                  "(5~{S},5~{a}~{R},8~{a}~{R},9~{R})-5-pyrimidin-2-ylsulfanyl-9-(3,4,5-trimethoxyphenyl)-5~{a},6,8~{a},9-tetrahydro-5~{H}-[2]benzofuro[5,6-f][1,3]benzodioxol-8-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H24 N2 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-05 
_chem_comp.pdbx_modified_date                    2024-10-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        508.543 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WIW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8WMO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WIW C4    C1  C 0 1 Y N N N N N 18.024 63.033 43.638 0.790  -2.607 1.287  C4    WIW 1  
WIW C5    C2  C 0 1 N N R N N N 19.508 66.354 42.567 -0.456 0.893  1.442  C5    WIW 2  
WIW C6    C3  C 0 1 N N N N N N 20.019 67.111 41.370 -0.050 2.321  1.656  C6    WIW 3  
WIW C7    C4  C 0 1 N N R N N N 18.689 65.184 42.213 0.645  -0.145 1.486  C7    WIW 4  
WIW C8    C5  C 0 1 Y N N N N N 18.535 70.094 47.823 -4.680 1.955  -2.143 C8    WIW 5  
WIW C10   C6  C 0 1 N N S N N N 18.675 66.873 44.799 -1.869 -0.280 -0.186 C10   WIW 6  
WIW C13   C7  C 0 1 N N N N N N 17.429 61.008 46.705 0.109  -5.882 0.016  C13   WIW 7  
WIW C15   C8  C 0 1 Y N N N N N 16.096 65.608 42.207 2.842  1.008  1.169  C15   WIW 8  
WIW C17   C9  C 0 1 Y N N N N N 15.009 65.910 40.028 3.908  1.109  -0.983 C17   WIW 9  
WIW C20   C10 C 0 1 Y N N N N N 19.955 68.719 46.644 -4.334 0.906  -0.124 C20   WIW 10 
WIW C22   C11 C 0 1 Y N N N N N 19.579 70.938 48.078 -5.885 2.450  -1.667 C22   WIW 11 
WIW C24   C12 C 0 1 N N N N N N 13.922 66.418 43.544 4.852  2.409  2.314  C24   WIW 12 
WIW C26   C13 C 0 1 N N N N N N 17.399 65.655 37.412 1.745  -0.663 -3.355 C26   WIW 13 
WIW C1    C14 C 0 1 Y N N N N N 18.024 64.640 46.143 -1.572 -2.735 -0.254 C1    WIW 14 
WIW C12   C15 C 0 1 N N N N N N 19.510 68.669 43.321 -1.684 2.282  0.003  C12   WIW 15 
WIW C14   C16 C 0 1 Y N N N N N 17.413 65.455 41.458 1.795  0.295  0.617  C14   WIW 16 
WIW C16   C17 C 0 1 Y N N N N N 14.983 65.829 41.545 3.900  1.419  0.372  C16   WIW 17 
WIW C19   C18 C 0 1 Y N N N N N 17.425 65.511 40.147 1.800  -0.016 -0.730 C19   WIW 18 
WIW C2    C19 C 0 1 Y N N N N N 20.812 70.629 47.587 -6.269 2.127  -0.375 C2    WIW 19 
WIW "C2'" C20 C 0 1 Y N N N N N 17.696 62.388 45.016 0.301  -3.822 0.837  "C2'" WIW 20 
WIW C25   C21 C 0 1 N N N N N N 13.149 64.948 39.049 6.052  0.616  -1.890 C25   WIW 21 
WIW "C3'" C22 C 0 1 Y N N N N N 17.695 63.118 46.166 -0.874 -3.886 0.073  "C3'" WIW 22 
WIW "C5'" C23 C 0 1 Y N N N N N 16.135 65.763 39.377 2.856  0.387  -1.533 "C5'" WIW 23 
WIW C9    C24 C 0 1 N N R N N N 18.753 67.330 43.419 -0.964 0.925  -0.034 C9    WIW 24 
WIW CAA   C25 C 0 1 Y N N N N N 18.342 65.292 44.846 -1.077 -1.515 0.209  CAA   WIW 25 
WIW CAB   C26 C 0 1 Y N N N N N 18.336 64.485 43.607 0.076  -1.452 0.961  CAB   WIW 26 
WIW N2    N1  N 0 1 Y N N N N N 20.980 69.534 46.880 -5.480 1.363  0.361  N2    WIW 27 
WIW N9    N2  N 0 1 Y N N N N N 18.738 68.999 47.110 -3.940 1.192  -1.357 N9    WIW 28 
WIW O1    O1  O 0 1 N N N N N N 20.224 68.603 41.857 -0.800 3.102  0.844  O1    WIW 29 
WIW "O2'" O2  O 0 1 N N N N N N 17.373 61.059 45.299 0.779  -5.076 1.007  "O2'" WIW 30 
WIW "O3'" O3  O 0 1 N N N N N N 17.374 62.302 47.229 -1.127 -5.179 -0.230 "O3'" WIW 31 
WIW "O4'" O4  O 0 1 N N N N N N 13.832 66.132 39.325 4.944  1.511  -1.768 "O4'" WIW 32 
WIW "O5'" O5  O 0 1 N N N N N N 16.141 65.844 37.984 2.859  0.082  -2.858 "O5'" WIW 33 
WIW O6    O6  O 0 1 N N N N N N 20.235 66.679 40.293 0.801  2.708  2.421  O6    WIW 34 
WIW OP3   O7  O 0 1 N N N N N N 13.775 65.984 42.226 4.927  2.126  0.915  OP3   WIW 35 
WIW S1    S1  S 0 1 N N N N N N 20.206 67.215 45.667 -3.313 -0.110 0.891  S1    WIW 36 
WIW H1    H1  H 0 1 N N N N N N 18.025 62.444 42.733 1.693  -2.555 1.877  H1    WIW 37 
WIW H2    H2  H 0 1 N N N N N N 20.378 66.005 43.142 -1.268 0.624  2.119  H2    WIW 38 
WIW H3    H3  H 0 1 N N N N N N 19.300 64.478 41.632 0.987  -0.277 2.512  H3    WIW 39 
WIW H4    H4  H 0 1 N N N N N N 17.549 70.320 48.202 -4.352 2.188  -3.146 H4    WIW 40 
WIW H5    H5  H 0 1 N N N N N N 17.882 67.411 45.339 -2.191 -0.365 -1.224 H5    WIW 41 
WIW H6    H6  H 0 1 N N N N N N 16.577 60.424 47.083 0.704  -5.939 -0.896 H6    WIW 42 
WIW H7    H7  H 0 1 N N N N N N 18.369 60.528 47.016 -0.090 -6.881 0.404  H7    WIW 43 
WIW H8    H8  H 0 1 N N N N N N 16.077 65.535 43.284 2.835  1.249  2.222  H8    WIW 44 
WIW H9    H9  H 0 1 N N N N N N 19.429 71.836 48.659 -6.510 3.072  -2.289 H9    WIW 45 
WIW H10   H10 H 0 1 N N N N N N 12.931 66.516 44.011 3.955  2.993  2.519  H10   WIW 46 
WIW H11   H11 H 0 1 N N N N N N 14.522 65.687 44.106 4.812  1.474  2.872  H11   WIW 47 
WIW H12   H12 H 0 1 N N N N N N 14.430 67.394 43.554 5.732  2.976  2.618  H12   WIW 48 
WIW H13   H13 H 0 1 N N N N N N 17.320 65.733 36.318 1.873  -0.839 -4.423 H13   WIW 49 
WIW H14   H14 H 0 1 N N N N N N 18.091 66.424 37.786 1.685  -1.618 -2.834 H14   WIW 50 
WIW H15   H15 H 0 1 N N N N N N 17.778 64.658 37.682 0.828  -0.099 -3.187 H15   WIW 51 
WIW H16   H16 H 0 1 N N N N N N 18.021 65.214 47.058 -2.476 -2.781 -0.843 H16   WIW 52 
WIW H17   H17 H 0 1 N N N N N N 20.261 68.754 44.120 -1.764 2.704  -0.999 H17   WIW 53 
WIW H18   H18 H 0 1 N N N N N N 18.814 69.518 43.380 -2.670 2.183  0.458  H18   WIW 54 
WIW H19   H19 H 0 1 N N N N N N 18.353 65.378 39.612 0.979  -0.573 -1.158 H19   WIW 55 
WIW H20   H20 H 0 1 N N N N N N 21.650 71.283 47.779 -7.201 2.497  0.026  H20   WIW 56 
WIW H21   H21 H 0 1 N N N N N N 12.228 65.177 38.493 6.484  0.436  -0.905 H21   WIW 57 
WIW H22   H22 H 0 1 N N N N N N 13.788 64.289 38.444 5.711  -0.328 -2.315 H22   WIW 58 
WIW H23   H23 H 0 1 N N N N N N 12.892 64.444 39.993 6.806  1.057  -2.542 H23   WIW 59 
WIW H24   H24 H 0 1 N N N N N N 17.741 67.464 43.010 -0.146 0.918  -0.754 H24   WIW 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WIW C26   "O5'" SING N N 1  
WIW "O5'" "C5'" SING N N 2  
WIW C25   "O4'" SING N N 3  
WIW "O4'" C17   SING N N 4  
WIW "C5'" C17   DOUB Y N 5  
WIW "C5'" C19   SING Y N 6  
WIW C17   C16   SING Y N 7  
WIW C19   C14   DOUB Y N 8  
WIW O6    C6    DOUB N N 9  
WIW C6    O1    SING N N 10 
WIW C6    C5    SING N N 11 
WIW C14   C15   SING Y N 12 
WIW C14   C7    SING N N 13 
WIW C16   C15   DOUB Y N 14 
WIW C16   OP3   SING N N 15 
WIW O1    C12   SING N N 16 
WIW C7    C5    SING N N 17 
WIW C7    CAB   SING N N 18 
WIW OP3   C24   SING N N 19 
WIW C5    C9    SING N N 20 
WIW C12   C9    SING N N 21 
WIW C9    C10   SING N N 22 
WIW CAB   C4    DOUB Y N 23 
WIW CAB   CAA   SING Y N 24 
WIW C4    "C2'" SING Y N 25 
WIW C10   CAA   SING N N 26 
WIW C10   S1    SING N N 27 
WIW CAA   C1    DOUB Y N 28 
WIW "C2'" "O2'" SING N N 29 
WIW "C2'" "C3'" DOUB Y N 30 
WIW "O2'" C13   SING N N 31 
WIW S1    C20   SING N N 32 
WIW C1    "C3'" SING Y N 33 
WIW "C3'" "O3'" SING N N 34 
WIW C20   N2    DOUB Y N 35 
WIW C20   N9    SING Y N 36 
WIW C13   "O3'" SING N N 37 
WIW N2    C2    SING Y N 38 
WIW N9    C8    DOUB Y N 39 
WIW C2    C22   DOUB Y N 40 
WIW C8    C22   SING Y N 41 
WIW C4    H1    SING N N 42 
WIW C5    H2    SING N N 43 
WIW C7    H3    SING N N 44 
WIW C8    H4    SING N N 45 
WIW C10   H5    SING N N 46 
WIW C13   H6    SING N N 47 
WIW C13   H7    SING N N 48 
WIW C15   H8    SING N N 49 
WIW C22   H9    SING N N 50 
WIW C24   H10   SING N N 51 
WIW C24   H11   SING N N 52 
WIW C24   H12   SING N N 53 
WIW C26   H13   SING N N 54 
WIW C26   H14   SING N N 55 
WIW C26   H15   SING N N 56 
WIW C1    H16   SING N N 57 
WIW C12   H17   SING N N 58 
WIW C12   H18   SING N N 59 
WIW C19   H19   SING N N 60 
WIW C2    H20   SING N N 61 
WIW C25   H21   SING N N 62 
WIW C25   H22   SING N N 63 
WIW C25   H23   SING N N 64 
WIW C9    H24   SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WIW InChI            InChI                1.06  "InChI=1S/C26H24N2O7S/c1-30-19-7-13(8-20(31-2)23(19)32-3)21-14-9-17-18(35-12-34-17)10-15(14)24(16-11-33-25(29)22(16)21)36-26-27-5-4-6-28-26/h4-10,16,21-22,24H,11-12H2,1-3H3/t16-,21+,22-,24+/m0/s1" 
WIW InChIKey         InChI                1.06  VJWQXPQIWVFAAY-JNTAVDMJSA-N                                                                                                                                                                          
WIW SMILES_CANONICAL CACTVS               3.385 "COc1cc(cc(OC)c1OC)[C@H]2[C@@H]3[C@H](COC3=O)[C@H](Sc4ncccn4)c5cc6OCOc6cc25"                                                                                                                         
WIW SMILES           CACTVS               3.385 "COc1cc(cc(OC)c1OC)[CH]2[CH]3[CH](COC3=O)[CH](Sc4ncccn4)c5cc6OCOc6cc25"                                                                                                                              
WIW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(cc(c1OC)OC)[C@@H]2c3cc4c(cc3[C@H]([C@@H]5[C@@H]2C(=O)OC5)Sc6ncccn6)OCO4"                                                                                                                     
WIW SMILES           "OpenEye OEToolkits" 2.0.7 "COc1cc(cc(c1OC)OC)C2c3cc4c(cc3C(C5C2C(=O)OC5)Sc6ncccn6)OCO4"                                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           WIW 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(5~{S},5~{a}~{R},8~{a}~{R},9~{R})-5-pyrimidin-2-ylsulfanyl-9-(3,4,5-trimethoxyphenyl)-5~{a},6,8~{a},9-tetrahydro-5~{H}-[2]benzofuro[5,6-f][1,3]benzodioxol-8-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WIW "Create component" 2023-10-05 PDBC 
WIW "Initial release"  2024-10-09 RCSB 
# 
