data_XPW
# 
_chem_comp.id                                    XPW 
_chem_comp.name                                  "1-({(5S,7S)-3-[5-(2-hydroxypropan-2-yl)pyrazin-2-yl]-7-methyl-2-oxo-1-oxa-3-azaspiro[4.5]decan-7-yl}methyl)-1H-benzimidazole-6-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H28 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         GSK2798745 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-05 
_chem_comp.pdbx_modified_date                    2023-07-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        460.528 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XPW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FC7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XPW C12 C1  C 0 1 N N N 113.805 112.883 156.924 1.689  1.681  0.243  C12 XPW 1  
XPW C13 C2  C 0 1 N N S 114.822 112.041 156.280 0.249  1.564  -0.279 C13 XPW 2  
XPW C14 C3  C 0 1 N N N 116.195 112.704 156.427 -0.101 2.776  -1.137 C14 XPW 3  
XPW C15 C4  C 0 1 N N N 117.281 112.153 155.496 -1.529 2.631  -1.668 C15 XPW 4  
XPW C16 C5  C 0 1 N N N 116.818 111.914 154.059 -2.501 2.521  -0.492 C16 XPW 5  
XPW C17 C6  C 0 1 N N S 115.492 111.163 153.978 -2.151 1.291  0.348  C17 XPW 6  
XPW C18 C7  C 0 1 N N N 115.722 109.736 154.472 -2.247 0.035  -0.522 C18 XPW 7  
XPW C19 C8  C 0 1 N N N 115.010 111.138 152.512 -3.130 1.177  1.518  C19 XPW 8  
XPW C23 C9  C 0 1 Y N N 111.486 110.379 152.336 -6.405 0.235  0.190  C23 XPW 9  
XPW C01 C10 C 0 1 N N N 107.118 111.937 160.120 8.328  0.069  1.547  C01 XPW 10 
XPW C02 C11 C 0 1 N N N 107.740 113.193 159.516 7.725  -0.815 0.453  C02 XPW 11 
XPW C03 C12 C 0 1 N N N 107.831 114.279 160.588 8.493  -0.605 -0.853 C03 XPW 12 
XPW O04 O1  O 0 1 N N N 106.950 113.643 158.455 7.818  -2.186 0.845  O04 XPW 13 
XPW C05 C13 C 0 1 Y N N 109.150 112.869 159.007 6.278  -0.447 0.251  C05 XPW 14 
XPW C06 C14 C 0 1 Y N N 109.382 112.744 157.645 5.493  -1.187 -0.614 C06 XPW 15 
XPW N07 N1  N 0 1 Y N N 110.604 112.464 157.213 4.223  -0.867 -0.794 N07 XPW 16 
XPW C08 C15 C 0 1 Y N N 111.588 112.308 158.081 3.702  0.165  -0.144 C08 XPW 17 
XPW C09 C16 C 0 1 Y N N 111.355 112.436 159.439 4.495  0.908  0.726  C09 XPW 18 
XPW N10 N2  N 0 1 Y N N 110.135 112.715 159.873 5.761  0.580  0.904  N10 XPW 19 
XPW N11 N3  N 0 1 N N N 112.932 112.001 157.609 2.363  0.505  -0.331 N11 XPW 20 
XPW N20 N4  N 0 1 Y N N 113.670 110.581 152.443 -4.495 1.044  1.002  N20 XPW 21 
XPW C21 C17 C 0 1 Y N N 113.363 109.292 152.416 -5.390 2.051  0.820  C21 XPW 22 
XPW N22 N5  N 0 1 Y N N 112.050 109.141 152.353 -6.506 1.578  0.345  N22 XPW 23 
XPW C24 C18 C 0 1 Y N N 110.143 110.825 152.277 -7.285 -0.748 -0.278 C24 XPW 24 
XPW C25 C19 C 0 1 Y N N 109.860 112.188 152.275 -6.893 -2.052 -0.319 C25 XPW 25 
XPW C26 C20 C 0 1 Y N N 110.902 113.112 152.332 -5.608 -2.423 0.104  C26 XPW 26 
XPW C27 C21 C 0 1 Y N N 112.221 112.678 152.391 -4.720 -1.456 0.571  C27 XPW 27 
XPW C28 C22 C 0 1 Y N N 112.507 111.287 152.391 -5.112 -0.129 0.609  C28 XPW 28 
XPW C29 C23 C 0 1 N N N 110.586 114.604 152.331 -5.209 -3.797 0.056  C29 XPW 29 
XPW N30 N6  N 0 1 N N N 110.351 115.713 152.329 -4.892 -4.887 0.018  N30 XPW 30 
XPW C31 C24 C 0 1 N N N 114.407 111.825 154.829 -0.725 1.431  0.887  C31 XPW 31 
XPW O32 O2  O 0 1 N N N 114.826 110.784 156.965 0.253  0.354  -1.083 O32 XPW 32 
XPW C33 C25 C 0 1 N N N 113.626 110.723 157.756 1.478  -0.186 -1.064 C33 XPW 33 
XPW O34 O3  O 0 1 N N N 113.265 109.805 158.410 1.762  -1.208 -1.657 O34 XPW 34 
XPW H1  H1  H 0 1 N N N 114.279 113.577 157.634 2.153  2.601  -0.113 H1  XPW 35 
XPW H2  H2  H 0 1 N N N 113.250 113.456 156.167 1.709  1.640  1.332  H2  XPW 36 
XPW H3  H3  H 0 1 N N N 116.532 112.565 157.465 -0.028 3.681  -0.533 H3  XPW 37 
XPW H4  H4  H 0 1 N N N 116.080 113.778 156.219 0.594  2.841  -1.974 H4  XPW 38 
XPW H5  H5  H 0 1 N N N 117.634 111.196 155.908 -1.783 3.504  -2.270 H5  XPW 39 
XPW H6  H6  H 0 1 N N N 118.113 112.872 155.474 -1.599 1.734  -2.283 H6  XPW 40 
XPW H7  H7  H 0 1 N N N 117.587 111.326 153.536 -2.426 3.415  0.126  H7  XPW 41 
XPW H8  H8  H 0 1 N N N 116.700 112.888 153.562 -3.519 2.424  -0.870 H8  XPW 42 
XPW H9  H9  H 0 1 N N N 116.065 109.760 155.517 -1.653 0.172  -1.425 H9  XPW 43 
XPW H10 H10 H 0 1 N N N 114.781 109.170 154.408 -1.870 -0.822 0.035  H10 XPW 44 
XPW H11 H11 H 0 1 N N N 116.485 109.250 153.846 -3.288 -0.139 -0.795 H11 XPW 45 
XPW H12 H12 H 0 1 N N N 115.694 110.519 151.913 -2.881 0.300  2.116  H12 XPW 46 
XPW H13 H13 H 0 1 N N N 115.000 112.163 152.113 -3.062 2.071  2.137  H13 XPW 47 
XPW H14 H14 H 0 1 N N N 107.741 111.584 160.955 8.257  1.115  1.248  H14 XPW 48 
XPW H15 H15 H 0 1 N N N 106.108 112.169 160.489 7.781  -0.081 2.478  H15 XPW 49 
XPW H16 H16 H 0 1 N N N 107.056 111.152 159.351 9.375  -0.197 1.694  H16 XPW 50 
XPW H17 H17 H 0 1 N N N 108.454 113.921 161.421 9.540  -0.871 -0.707 H17 XPW 51 
XPW H18 H18 H 0 1 N N N 108.283 115.184 160.156 8.063  -1.235 -1.632 H18 XPW 52 
XPW H19 H19 H 0 1 N N N 106.822 114.514 160.959 8.422  0.441  -1.152 H19 XPW 53 
XPW H20 H20 H 0 1 N N N 106.077 113.843 158.772 7.353  -2.393 1.667  H20 XPW 54 
XPW H21 H21 H 0 1 N N N 108.573 112.874 156.941 5.918  -2.027 -1.143 H21 XPW 55 
XPW H22 H22 H 0 1 N N N 112.165 112.309 160.142 4.074  1.749  1.257  H22 XPW 56 
XPW H23 H23 H 0 1 N N N 114.079 108.484 152.442 -5.201 3.092  1.038  H23 XPW 57 
XPW H24 H24 H 0 1 N N N 109.338 110.107 152.234 -8.276 -0.473 -0.605 H24 XPW 58 
XPW H25 H25 H 0 1 N N N 108.836 112.528 152.229 -7.576 -2.806 -0.680 H25 XPW 59 
XPW H26 H26 H 0 1 N N N 113.026 113.396 152.437 -3.730 -1.740 0.897  H26 XPW 60 
XPW H27 H27 H 0 1 N N N 114.165 112.803 154.386 -0.471 0.548  1.474  H27 XPW 61 
XPW H28 H28 H 0 1 N N N 113.513 111.184 154.814 -0.661 2.317  1.517  H28 XPW 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XPW C25 C24 DOUB Y N 1  
XPW C25 C26 SING Y N 2  
XPW C24 C23 SING Y N 3  
XPW N30 C29 TRIP N N 4  
XPW C29 C26 SING N N 5  
XPW C26 C27 DOUB Y N 6  
XPW C23 N22 SING Y N 7  
XPW C23 C28 DOUB Y N 8  
XPW N22 C21 DOUB Y N 9  
XPW C27 C28 SING Y N 10 
XPW C28 N20 SING Y N 11 
XPW C21 N20 SING Y N 12 
XPW N20 C19 SING N N 13 
XPW C19 C17 SING N N 14 
XPW C17 C16 SING N N 15 
XPW C17 C18 SING N N 16 
XPW C17 C31 SING N N 17 
XPW C16 C15 SING N N 18 
XPW C31 C13 SING N N 19 
XPW C15 C14 SING N N 20 
XPW C13 C14 SING N N 21 
XPW C13 C12 SING N N 22 
XPW C13 O32 SING N N 23 
XPW C12 N11 SING N N 24 
XPW O32 C33 SING N N 25 
XPW N07 C06 DOUB Y N 26 
XPW N07 C08 SING Y N 27 
XPW N11 C33 SING N N 28 
XPW N11 C08 SING N N 29 
XPW C06 C05 SING Y N 30 
XPW C33 O34 DOUB N N 31 
XPW C08 C09 DOUB Y N 32 
XPW O04 C02 SING N N 33 
XPW C05 C02 SING N N 34 
XPW C05 N10 DOUB Y N 35 
XPW C09 N10 SING Y N 36 
XPW C02 C01 SING N N 37 
XPW C02 C03 SING N N 38 
XPW C12 H1  SING N N 39 
XPW C12 H2  SING N N 40 
XPW C14 H3  SING N N 41 
XPW C14 H4  SING N N 42 
XPW C15 H5  SING N N 43 
XPW C15 H6  SING N N 44 
XPW C16 H7  SING N N 45 
XPW C16 H8  SING N N 46 
XPW C18 H9  SING N N 47 
XPW C18 H10 SING N N 48 
XPW C18 H11 SING N N 49 
XPW C19 H12 SING N N 50 
XPW C19 H13 SING N N 51 
XPW C01 H14 SING N N 52 
XPW C01 H15 SING N N 53 
XPW C01 H16 SING N N 54 
XPW C03 H17 SING N N 55 
XPW C03 H18 SING N N 56 
XPW C03 H19 SING N N 57 
XPW O04 H20 SING N N 58 
XPW C06 H21 SING N N 59 
XPW C09 H22 SING N N 60 
XPW C21 H23 SING N N 61 
XPW C24 H24 SING N N 62 
XPW C25 H25 SING N N 63 
XPW C27 H26 SING N N 64 
XPW C31 H27 SING N N 65 
XPW C31 H28 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XPW SMILES           ACDLabs              12.01 "CC(C)(O)c1ncc(nc1)N1CC2(CCCC(C)(Cn3cnc4ccc(C#N)cc43)C2)OC1=O"                                                                                                                            
XPW InChI            InChI                1.06  "InChI=1S/C25H28N6O3/c1-23(2,33)20-11-28-21(12-27-20)31-15-25(34-22(31)32)8-4-7-24(3,13-25)14-30-16-29-18-6-5-17(10-26)9-19(18)30/h5-6,9,11-12,16,33H,4,7-8,13-15H2,1-3H3/t24-,25-/m0/s1" 
XPW InChIKey         InChI                1.06  URCMKDJBULWNAI-DQEYMECFSA-N                                                                                                                                                               
XPW SMILES_CANONICAL CACTVS               3.385 "CC(C)(O)c1cnc(cn1)N2C[C@@]3(CCC[C@](C)(Cn4cnc5ccc(cc45)C#N)C3)OC2=O"                                                                                                                     
XPW SMILES           CACTVS               3.385 "CC(C)(O)c1cnc(cn1)N2C[C]3(CCC[C](C)(Cn4cnc5ccc(cc45)C#N)C3)OC2=O"                                                                                                                        
XPW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@]1(CCC[C@]2(C1)CN(C(=O)O2)c3cnc(cn3)C(C)(C)O)Cn4cnc5c4cc(cc5)C#N"                                                                                                                   
XPW SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(CCCC2(C1)CN(C(=O)O2)c3cnc(cn3)C(C)(C)O)Cn4cnc5c4cc(cc5)C#N"                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XPW "SYSTEMATIC NAME" ACDLabs              12.01 "1-({(5S,7S)-3-[5-(2-hydroxypropan-2-yl)pyrazin-2-yl]-7-methyl-2-oxo-1-oxa-3-azaspiro[4.5]decan-7-yl}methyl)-1H-benzimidazole-6-carbonitrile"              
XPW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[[(5~{S},7~{S})-7-methyl-2-oxidanylidene-3-[5-(2-oxidanylpropan-2-yl)pyrazin-2-yl]-1-oxa-3-azaspiro[4.5]decan-7-yl]methyl]benzimidazole-5-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XPW "Create component" 2022-12-05 RCSB 
XPW "Initial release"  2023-07-12 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      XPW 
_pdbx_chem_comp_synonyms.name         GSK2798745 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
