data_ZXW
# 
_chem_comp.id                                    ZXW 
_chem_comp.name                                  "5'-O-[(S)-{[(R)-{[(R)-[(2-{[(2S)-2-amino-3-oxopropyl]amino}-2-oxoethyl)sulfanyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H24 N7 O15 P3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-01-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        667.375 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZXW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6BUU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZXW N     N     N 0 1 N N N Y Y N -36.458 4.161  26.532 10.804 -1.916 -1.392 N     ZXW 1  
ZXW CA    CA    C 0 1 N N S N Y N -35.807 5.348  27.047 10.259 -1.850 -0.030 CA    ZXW 2  
ZXW CB    CB    C 0 1 N N N N N N -34.474 5.639  26.388 8.730  -1.868 -0.091 CB    ZXW 3  
ZXW O2A   O2A   O 0 1 N N N N N N -35.168 1.766  16.459 -1.532 2.679  2.241  O2A   ZXW 4  
ZXW PA    PA    P 0 1 N N N N N N -33.944 1.405  17.106 -1.346 2.786  0.776  PA    ZXW 5  
ZXW O1A   O1A   O 0 1 N N N N N N -32.942 2.257  16.523 -1.197 4.336  0.366  O1A   ZXW 6  
ZXW O3A   O3A   O 0 1 N N N N N N -33.680 1.914  18.595 -0.018 1.986  0.344  O3A   ZXW 7  
ZXW PB    PB    P 0 1 N N N N N N -34.837 2.030  19.664 1.449  1.824  0.987  PB    ZXW 8  
ZXW O1B   O1B   O 0 1 N N N N N N -35.540 0.735  19.837 1.894  3.126  1.534  O1B   ZXW 9  
ZXW O2B   O2B   O 0 1 N N N N N N -34.241 2.430  20.905 1.400  0.734  2.171  O2B   ZXW 10 
ZXW O3B   O3B   O 0 1 N N N N N N -35.606 3.328  19.303 2.482  1.338  -0.148 O3B   ZXW 11 
ZXW PG    PG    P 0 1 N N N N N N -36.621 3.642  20.427 4.088  1.286  -0.251 PG    ZXW 12 
ZXW O1G   O1G   O 0 1 N N N N N N -37.865 4.222  19.851 4.636  2.654  -0.113 O1G   ZXW 13 
ZXW O3G   O3G   O 0 1 N N N N N N -37.024 2.368  21.091 4.671  0.354  0.925  O3G   ZXW 14 
ZXW S2G   S2G   S 0 1 N N N N N N -36.106 4.587  22.129 4.650  0.485  -2.132 S2G   ZXW 15 
ZXW C32   C32   C 0 1 N N N N N N -34.503 4.436  22.832 6.463  0.507  -2.059 C32   ZXW 16 
ZXW C33   C33   C 0 1 N N N N N N -34.571 5.345  24.040 6.943  -0.607 -1.165 C33   ZXW 17 
ZXW O35   O35   O 0 1 N N N N N N -34.960 6.479  23.940 6.141  -1.343 -0.629 O35   ZXW 18 
ZXW N34   N34   N 0 1 N N N N N N -34.228 4.872  25.200 8.263  -0.785 -0.960 N34   ZXW 19 
ZXW "O5'" "O5'" O 0 1 N N N N N N -33.621 -0.116 16.874 -2.622 2.153  0.026  "O5'" ZXW 20 
ZXW "C5'" "C5'" C 0 1 N N N N N N -34.582 -1.130 16.714 -3.964 2.576  0.279  "C5'" ZXW 21 
ZXW "C4'" "C4'" C 0 1 N N R N N N -33.959 -2.502 16.906 -4.926 1.773  -0.598 "C4'" ZXW 22 
ZXW "O4'" "O4'" O 0 1 N N N N N N -32.846 -2.767 16.096 -4.981 0.399  -0.157 "O4'" ZXW 23 
ZXW "C1'" "C1'" C 0 1 N N R N N N -31.916 -3.542 16.775 -6.222 -0.120 -0.683 "C1'" ZXW 24 
ZXW "C2'" "C2'" C 0 1 N N R N N N -32.231 -3.469 18.235 -7.241 1.024  -0.490 "C2'" ZXW 25 
ZXW "O2'" "O2'" O 0 1 N N N N N N -32.316 -4.766 18.773 -8.142 1.083  -1.598 "O2'" ZXW 26 
ZXW "C3'" "C3'" C 0 1 N N S N N N -33.512 -2.690 18.317 -6.369 2.298  -0.433 "C3'" ZXW 27 
ZXW "O3'" "O3'" O 0 1 N N N N N N -34.553 -3.382 18.964 -6.705 3.183  -1.504 "O3'" ZXW 28 
ZXW N9    N9    N 0 1 Y N N N N N -30.599 -2.996 16.511 -6.638 -1.306 0.070  N9    ZXW 29 
ZXW C8    C8    C 0 1 Y N N N N N -30.197 -1.761 16.655 -6.275 -1.620 1.346  C8    ZXW 30 
ZXW N7    N7    N 0 1 Y N N N N N -28.933 -1.620 16.293 -6.828 -2.744 1.702  N7    ZXW 31 
ZXW C5    C5    C 0 1 Y N N N N N -28.500 -2.800 15.901 -7.578 -3.221 0.679  C5    ZXW 32 
ZXW C6    C6    C 0 1 Y N N N N N -27.257 -3.382 15.380 -8.383 -4.357 0.491  C6    ZXW 33 
ZXW N6    N6    N 0 1 N N N N N N -26.163 -2.674 15.207 -8.528 -5.297 1.496  N6    ZXW 34 
ZXW N1    N1    N 0 1 Y N N N N N -27.246 -4.665 15.114 -9.001 -4.508 -0.676 N1    ZXW 35 
ZXW C2    C2    C 0 1 Y N N N N N -28.319 -5.423 15.263 -8.869 -3.617 -1.641 C2    ZXW 36 
ZXW N3    N3    N 0 1 Y N N N N N -29.468 -4.979 15.711 -8.126 -2.538 -1.509 N3    ZXW 37 
ZXW C4    C4    C 0 1 Y N N N N N -29.617 -3.703 16.041 -7.470 -2.302 -0.378 C4    ZXW 38 
ZXW C     C     C 0 1 N N N N Y Y -36.704 6.552  26.825 10.744 -3.036 0.764  C     ZXW 39 
ZXW O     O     O 0 1 N N N N Y Y -37.734 6.433  26.251 11.151 -4.019 0.192  O     ZXW 40 
ZXW H     H1    H 0 1 N N N Y Y N -37.328 4.025  27.006 11.810 -1.841 -1.383 H     ZXW 41 
ZXW H2    H2    H 0 1 N Y N Y Y N -36.626 4.271  25.552 10.509 -2.761 -1.859 H2    ZXW 42 
ZXW HA    H4    H 0 1 N N N N Y N -35.642 5.232  28.128 10.592 -0.930 0.451  HA    ZXW 43 
ZXW H5    H5    H 0 1 N N N N N N -33.675 5.420  27.112 8.394  -2.825 -0.490 H5    ZXW 44 
ZXW H6    H6    H 0 1 N N N N N N -34.446 6.706  26.122 8.324  -1.730 0.911  H6    ZXW 45 
ZXW H7    H7    H 0 1 N N N N N N -33.345 2.824  15.876 -1.072 4.481  -0.582 H7    ZXW 46 
ZXW H8    H8    H 0 1 N N N N N N -34.426 1.778  21.570 1.115  -0.145 1.884  H8    ZXW 47 
ZXW H9    H9    H 0 1 N N N N N N -37.959 2.238  20.987 4.354  -0.559 0.898  H9    ZXW 48 
ZXW H10   H10   H 0 1 N N N N N N -34.299 3.397  23.131 6.868  0.369  -3.061 H10   ZXW 49 
ZXW H11   H11   H 0 1 N N N N N N -33.729 4.774  22.127 6.799  1.464  -1.660 H11   ZXW 50 
ZXW H12   H12   H 0 1 N N N N N N -33.793 3.974  25.265 8.904  -0.197 -1.389 H12   ZXW 51 
ZXW H13   H13   H 0 1 N N N N N N -35.381 -0.990 17.457 -4.205 2.410  1.329  H13   ZXW 52 
ZXW H14   H14   H 0 1 N N N N N N -35.008 -1.066 15.702 -4.060 3.636  0.048  H14   ZXW 53 
ZXW H15   H15   H 0 1 N N N N N N -34.738 -3.250 16.698 -4.620 1.826  -1.643 H15   ZXW 54 
ZXW H16   H16   H 0 1 N N N N N N -31.962 -4.590 16.444 -6.115 -0.360 -1.741 H16   ZXW 55 
ZXW H17   H17   H 0 1 N N N N N N -31.438 -2.900 18.742 -7.790 0.894  0.443  H17   ZXW 56 
ZXW H18   H18   H 0 1 N N N N N N -32.516 -4.712 19.700 -8.805 1.785  -1.529 H18   ZXW 57 
ZXW H19   H19   H 0 1 N N N N N N -33.328 -1.713 18.788 -6.486 2.798  0.528  H19   ZXW 58 
ZXW H20   H20   H 0 1 N N N N N N -34.319 -3.529 19.873 -7.601 3.543  -1.451 H20   ZXW 59 
ZXW H21   H21   H 0 1 N N N N N N -30.818 -0.958 17.023 -5.625 -1.025 1.970  H21   ZXW 60 
ZXW H22   H22   H 0 1 N N N N N N -25.431 -3.267 14.873 -8.072 -5.175 2.343  H22   ZXW 61 
ZXW H23   H23   H 0 1 N N N N N N -26.337 -1.950 14.539 -9.086 -6.077 1.354  H23   ZXW 62 
ZXW H24   H24   H 0 1 N N N N N N -28.244 -6.468 15.001 -9.389 -3.779 -2.573 H24   ZXW 63 
ZXW OXT   OXT   O 0 1 N Y N N Y Y ?       ?      ?      10.723 -3.000 2.105  O1    ZXW 64 
ZXW HXT   HXT   H 0 1 N Y N N Y Y ?       ?      ?      11.044 -3.784 2.571  H1    ZXW 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZXW N1    C2    DOUB Y N 1  
ZXW N1    C6    SING Y N 2  
ZXW N6    C6    SING N N 3  
ZXW C2    N3    SING Y N 4  
ZXW C6    C5    DOUB Y N 5  
ZXW N3    C4    DOUB Y N 6  
ZXW C5    C4    SING Y N 7  
ZXW C5    N7    SING Y N 8  
ZXW C4    N9    SING Y N 9  
ZXW "O4'" "C1'" SING N N 10 
ZXW "O4'" "C4'" SING N N 11 
ZXW N7    C8    DOUB Y N 12 
ZXW O2A   PA    DOUB N N 13 
ZXW N9    C8    SING Y N 14 
ZXW N9    "C1'" SING N N 15 
ZXW O1A   PA    SING N N 16 
ZXW "C5'" "O5'" SING N N 17 
ZXW "C5'" "C4'" SING N N 18 
ZXW "C1'" "C2'" SING N N 19 
ZXW "O5'" PA    SING N N 20 
ZXW "C4'" "C3'" SING N N 21 
ZXW PA    O3A   SING N N 22 
ZXW "C2'" "C3'" SING N N 23 
ZXW "C2'" "O2'" SING N N 24 
ZXW "C3'" "O3'" SING N N 25 
ZXW O3A   PB    SING N N 26 
ZXW O3B   PB    SING N N 27 
ZXW O3B   PG    SING N N 28 
ZXW PB    O1B   DOUB N N 29 
ZXW PB    O2B   SING N N 30 
ZXW O1G   PG    DOUB N N 31 
ZXW PG    O3G   SING N N 32 
ZXW PG    S2G   SING N N 33 
ZXW S2G   C32   SING N N 34 
ZXW C32   C33   SING N N 35 
ZXW O35   C33   DOUB N N 36 
ZXW C33   N34   SING N N 37 
ZXW N34   CB    SING N N 38 
ZXW O     C     DOUB N N 39 
ZXW CB    CA    SING N N 40 
ZXW N     CA    SING N N 41 
ZXW C     CA    SING N N 42 
ZXW N     H     SING N N 43 
ZXW N     H2    SING N N 44 
ZXW CA    HA    SING N N 45 
ZXW CB    H5    SING N N 46 
ZXW CB    H6    SING N N 47 
ZXW O1A   H7    SING N N 48 
ZXW O2B   H8    SING N N 49 
ZXW O3G   H9    SING N N 50 
ZXW C32   H10   SING N N 51 
ZXW C32   H11   SING N N 52 
ZXW N34   H12   SING N N 53 
ZXW "C5'" H13   SING N N 54 
ZXW "C5'" H14   SING N N 55 
ZXW "C4'" H15   SING N N 56 
ZXW "C1'" H16   SING N N 57 
ZXW "C2'" H17   SING N N 58 
ZXW "O2'" H18   SING N N 59 
ZXW "C3'" H19   SING N N 60 
ZXW "O3'" H20   SING N N 61 
ZXW C8    H21   SING N N 62 
ZXW N6    H22   SING N N 63 
ZXW N6    H23   SING N N 64 
ZXW C2    H24   SING N N 65 
ZXW C     OXT   SING N N 66 
ZXW OXT   HXT   SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZXW SMILES           ACDLabs              12.01 "NC(CNC(CSP(OP(OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)(=O)O)(O)=O)=O)C=O"                                                                                                                                                                                           
ZXW InChI            InChI                1.06  "InChI=1S/C15H24N7O15P3S/c16-6(15(26)27)1-18-8(23)3-41-40(32,33)37-39(30,31)36-38(28,29)34-2-7-10(24)11(25)14(35-7)22-5-21-9-12(17)19-4-20-13(9)22/h4-7,10-11,14,24-25H,1-3,16H2,(H,18,23)(H,26,27)(H,28,29)(H,30,31)(H,32,33)(H2,17,19,20)/t6-,7+,10+,11+,14+/m0/s1" 
ZXW InChIKey         InChI                1.06  XOFIPCWNRZKVRI-LTOLZBHSSA-N                                                                                                                                                                                                                                           
ZXW SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CNC(=O)CS[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(O)=O"                                                                                                                                                            
ZXW SMILES           CACTVS               3.385 "N[CH](CNC(=O)CS[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(O)=O"                                                                                                                                                                   
ZXW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)SCC(=O)NC[C@@H](C(=O)O)N)O)O)N"                                                                                                                                                           
ZXW SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)SCC(=O)NCC(C(=O)O)N)O)O)N"                                                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZXW "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(S)-{[(R)-{[(R)-[(2-{[(2S)-2-amino-3-oxopropyl]amino}-2-oxoethyl)sulfanyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]adenosine"                                                            
ZXW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-3-[2-[[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]sulfanylethanoylamino]-2-azanyl-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZXW "Create component"              2018-01-18 RCSB 
ZXW "Modify model coordinates code" 2018-07-30 RCSB 
ZXW "Initial release"               2018-08-22 RCSB 
ZXW "Modify backbone"               2023-11-03 PDBE 
ZXW "Other modification"            2024-06-28 PDBE 
ZXW "Modify PCM"                    2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            ZXW 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
