data_0AX
# 
_chem_comp.id                                    0AX 
_chem_comp.name                                  "N-[(2S)-3-cyclohexyl-1-oxidanylidene-1-[[(2S,3R)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepiperidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-1-benzofuran-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H42 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-29 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        602.720 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0AX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GXH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0AX C02 C1  C 0 1 N N N N N N 8.260  14.300 22.439 0.226  -0.433 -0.947 C02 0AX 1  
0AX C03 C2  C 0 1 N N S N N N 7.440  13.792 23.624 -1.104 0.202  -1.264 C03 0AX 2  
0AX C04 C3  C 0 1 N N N N N N 7.785  14.785 24.714 -1.027 1.707  -1.000 C04 0AX 3  
0AX C05 C4  C 0 1 N N N N N N 6.885  14.654 25.918 -2.334 2.369  -1.439 C05 0AX 4  
0AX C06 C5  C 0 1 N N N N N N 5.446  14.896 25.487 -2.492 2.231  -2.954 C06 0AX 5  
0AX C07 C6  C 0 1 N N N N N N 4.521  15.084 26.686 -3.800 2.894  -3.393 C07 0AX 6  
0AX C08 C7  C 0 1 N N N N N N 5.030  16.199 27.603 -3.772 4.376  -3.016 C08 0AX 7  
0AX C09 C8  C 0 1 N N N N N N 6.430  15.879 28.106 -3.614 4.514  -1.500 C09 0AX 8  
0AX C10 C9  C 0 1 N N N N N N 7.374  15.718 26.916 -2.307 3.852  -1.062 C10 0AX 9  
0AX C12 C10 C 0 1 N N N N N N 7.956  11.429 23.075 -3.427 -0.384 -0.821 C12 0AX 10 
0AX C13 C11 C 0 1 Y N N N N N 8.701  10.229 23.611 -4.468 -0.978 0.030  C13 0AX 11 
0AX C14 C12 C 0 1 Y N N N N N 9.038  9.008  23.022 -5.790 -1.033 -0.277 C14 0AX 12 
0AX C15 C13 C 0 1 Y N N N N N 9.832  8.296  24.017 -6.439 -1.704 0.849  C15 0AX 13 
0AX C16 C14 C 0 1 Y N N N N N 10.463 7.038  24.102 -7.758 -2.062 1.141  C16 0AX 14 
0AX C17 C15 C 0 1 Y N N N N N 11.172 6.690  25.260 -8.042 -2.700 2.316  C17 0AX 15 
0AX C18 C16 C 0 1 Y N N N N N 11.264 7.566  26.343 -7.030 -2.994 3.219  C18 0AX 16 
0AX C19 C17 C 0 1 Y N N N N N 10.649 8.799  26.272 -5.723 -2.649 2.950  C19 0AX 17 
0AX C20 C18 C 0 1 Y N N N N N 9.935  9.153  25.093 -5.409 -2.001 1.762  C20 0AX 18 
0AX C24 C19 C 0 1 N N S N N N 8.273  15.442 20.222 2.642  -0.578 -1.226 C24 0AX 19 
0AX C25 C20 C 0 1 N N N N N N 7.851  14.698 18.955 2.907  -1.875 -1.995 C25 0AX 20 
0AX C26 C21 C 0 1 N N S N N N 8.360  13.216 19.037 4.233  -2.481 -1.531 C26 0AX 21 
0AX C27 C22 C 0 1 N N N N N N 9.783  13.190 19.086 4.591  -3.667 -2.430 C27 0AX 22 
0AX C28 C23 C 0 1 N N N N N N 10.373 11.867 18.905 5.762  -4.423 -1.790 C28 0AX 23 
0AX C29 C24 C 0 1 N N N N N N 10.159 11.351 17.525 5.275  -5.074 -0.494 C29 0AX 24 
0AX C31 C25 C 0 1 N N N N N N 7.774  12.455 17.750 4.100  -2.940 -0.107 C31 0AX 25 
0AX C33 C26 C 0 1 N N R N N N 7.874  16.894 20.351 3.730  0.444  -1.561 C33 0AX 26 
0AX C35 C27 C 0 1 N N N N N N 8.838  17.782 19.589 3.469  1.721  -0.804 C35 0AX 27 
0AX C37 C28 C 0 1 N N N N N N 10.629 19.525 19.772 3.282  2.973  1.278  C37 0AX 28 
0AX C38 C29 C 0 1 Y N N N N N 11.960 18.739 19.867 3.417  2.717  2.757  C38 0AX 29 
0AX C39 C30 C 0 1 Y N N N N N 12.018 17.571 20.641 4.643  2.872  3.376  C39 0AX 30 
0AX C40 C31 C 0 1 Y N N N N N 13.200 16.832 20.750 4.768  2.637  4.732  C40 0AX 31 
0AX C41 C32 C 0 1 Y N N N N N 14.343 17.246 20.086 3.666  2.246  5.470  C41 0AX 32 
0AX C42 C33 C 0 1 Y N N N N N 14.298 18.401 19.306 2.439  2.091  4.851  C42 0AX 33 
0AX C43 C34 C 0 1 Y N N N N N 13.116 19.149 19.201 2.314  2.331  3.496  C43 0AX 34 
0AX N11 N1  N 0 1 N N N N N N 8.013  12.542 23.985 -2.142 -0.390 -0.416 N11 0AX 35 
0AX N23 N2  N 0 1 N N N N N N 7.534  14.904 21.363 1.333  -0.043 -1.609 N23 0AX 36 
0AX N30 N3  N 0 1 N N N N N N 8.736  11.542 17.024 4.592  -4.095 0.342  N30 0AX 37 
0AX N36 N4  N 0 1 N N N N N N 9.635  18.680 20.409 3.535  1.732  0.542  N36 0AX 38 
0AX O01 O1  O 0 1 N N N N N N 9.444  14.237 22.390 0.300  -1.291 -0.093 O01 0AX 39 
0AX O21 O2  O 0 1 Y N N N N N 9.265  10.299 24.814 -4.254 -1.555 1.231  O21 0AX 40 
0AX O22 O3  O 0 1 N N N N N N 7.443  11.532 22.004 -3.726 0.113  -1.890 O22 0AX 41 
0AX O32 O4  O 0 1 N N N N N N 6.656  12.616 17.423 3.515  -2.222 0.675  O32 0AX 42 
0AX O34 O5  O 0 1 N N N N N N 7.863  17.271 21.729 3.716  0.712  -2.965 O34 0AX 43 
0AX O44 O6  O 0 1 N N N N N N 8.975  17.725 18.424 3.200  2.739  -1.406 O44 0AX 44 
0AX H1  H1  H 0 1 N N N N N N 6.362  13.753 23.407 -1.349 0.029  -2.312 H1  0AX 45 
0AX H2  H2  H 0 1 N N N N N N 8.825  14.615 25.030 -0.870 1.882  0.064  H2  0AX 46 
0AX H3  H3  H 0 1 N N N N N N 7.687  15.803 24.309 -0.197 2.132  -1.564 H3  0AX 47 
0AX H4  H4  H 0 1 N N N N N N 6.984  13.652 26.361 -3.173 1.883  -0.940 H4  0AX 48 
0AX H5  H5  H 0 1 N N N N N N 5.408  15.801 24.863 -1.654 2.717  -3.453 H5  0AX 49 
0AX H6  H6  H 0 1 N N N N N N 5.099  14.032 24.901 -2.512 1.175  -3.223 H6  0AX 50 
0AX H7  H7  H 0 1 N N N N N N 3.515  15.345 26.326 -3.912 2.796  -4.473 H7  0AX 51 
0AX H8  H8  H 0 1 N N N N N N 4.474  14.144 27.255 -4.639 2.408  -2.895 H8  0AX 52 
0AX H9  H9  H 0 1 N N N N N N 5.054  17.145 27.043 -2.934 4.862  -3.514 H9  0AX 53 
0AX H10 H10 H 0 1 N N N N N N 4.351  16.299 28.462 -4.704 4.848  -3.329 H10 0AX 54 
0AX H11 H11 H 0 1 N N N N N N 6.407  14.944 28.685 -3.594 5.570  -1.232 H11 0AX 55 
0AX H12 H12 H 0 1 N N N N N N 6.785  16.699 28.748 -4.453 4.028  -1.002 H12 0AX 56 
0AX H13 H13 H 0 1 N N N N N N 8.366  15.423 27.289 -2.194 3.950  0.018  H13 0AX 57 
0AX H14 H14 H 0 1 N N N N N N 7.451  16.683 26.394 -1.468 4.338  -1.560 H14 0AX 58 
0AX H15 H15 H 0 1 N N N N N N 8.767  8.663  22.035 -6.266 -0.658 -1.171 H15 0AX 59 
0AX H16 H16 H 0 1 N N N N N N 10.400 6.344  23.277 -8.549 -1.834 0.442  H16 0AX 60 
0AX H17 H17 H 0 1 N N N N N N 11.656 5.726  25.315 -9.061 -2.976 2.543  H17 0AX 61 
0AX H18 H18 H 0 1 N N N N N N 11.812 7.281  27.229 -7.270 -3.498 4.144  H18 0AX 62 
0AX H19 H19 H 0 1 N N N N N N 10.709 9.488  27.102 -4.945 -2.883 3.661  H19 0AX 63 
0AX H20 H20 H 0 1 N N N N N N 9.357  15.334 20.374 2.652  -0.782 -0.155 H20 0AX 64 
0AX H21 H21 H 0 1 N N N N N N 8.290  15.190 18.075 2.098  -2.581 -1.806 H21 0AX 65 
0AX H22 H22 H 0 1 N N N N N N 6.754  14.707 18.871 2.959  -1.660 -3.062 H22 0AX 66 
0AX H23 H23 H 0 1 N N N N N N 7.933  12.748 19.936 5.018  -1.727 -1.595 H23 0AX 67 
0AX H24 H24 H 0 1 N N N N N N 10.100 13.576 20.066 3.732  -4.331 -2.521 H24 0AX 68 
0AX H25 H25 H 0 1 N N N N N N 10.166 13.848 18.292 4.883  -3.305 -3.416 H25 0AX 69 
0AX H26 H26 H 0 1 N N N N N N 9.912  11.171 19.621 6.118  -5.193 -2.474 H26 0AX 70 
0AX H27 H27 H 0 1 N N N N N N 11.454 11.930 19.098 6.571  -3.726 -1.570 H27 0AX 71 
0AX H28 H28 H 0 1 N N N N N N 10.391 10.276 17.515 4.588  -5.885 -0.735 H28 0AX 72 
0AX H29 H29 H 0 1 N N N N N N 10.842 11.880 16.845 6.130  -5.475 0.050  H29 0AX 73 
0AX H30 H30 H 0 1 N N N N N N 6.869  17.021 19.923 4.703  0.045  -1.276 H30 0AX 74 
0AX H31 H31 H 0 1 N N N N N N 10.712 20.487 20.300 2.273  3.324  1.061  H31 0AX 75 
0AX H32 H32 H 0 1 N N N N N N 10.363 19.706 18.720 4.004  3.730  0.973  H32 0AX 76 
0AX H33 H33 H 0 1 N N N N N N 11.133 17.236 21.162 5.504  3.177  2.799  H33 0AX 77 
0AX H34 H34 H 0 1 N N N N N N 13.222 15.936 21.353 5.726  2.758  5.216  H34 0AX 78 
0AX H35 H35 H 0 1 N N N N N N 15.259 16.680 20.171 3.763  2.062  6.530  H35 0AX 79 
0AX H36 H36 H 0 1 N N N N N N 15.183 18.723 18.777 1.579  1.785  5.427  H36 0AX 80 
0AX H37 H37 H 0 1 N N N N N N 13.100 20.047 18.601 1.356  2.210  3.012  H37 0AX 81 
0AX H38 H38 H 0 1 N N N N N N 8.457  12.436 24.875 -1.904 -0.786 0.437  H38 0AX 82 
0AX H39 H39 H 0 1 N N N N N N 6.536  14.957 21.391 1.264  0.593  -2.338 H39 0AX 83 
0AX H40 H40 H 0 1 N N N N N N 8.432  11.057 16.204 4.488  -4.297 1.286  H40 0AX 84 
0AX H41 H41 H 0 1 N N N N N N 9.500  18.715 21.399 3.750  0.918  1.024  H41 0AX 85 
0AX H42 H42 H 0 1 N N N N N N 7.259  16.714 22.205 2.878  1.069  -3.289 H42 0AX 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0AX N30 C29 SING N N 1  
0AX N30 C31 SING N N 2  
0AX O32 C31 DOUB N N 3  
0AX C29 C28 SING N N 4  
0AX C31 C26 SING N N 5  
0AX O44 C35 DOUB N N 6  
0AX C28 C27 SING N N 7  
0AX C25 C26 SING N N 8  
0AX C25 C24 SING N N 9  
0AX C26 C27 SING N N 10 
0AX C43 C42 DOUB Y N 11 
0AX C43 C38 SING Y N 12 
0AX C42 C41 SING Y N 13 
0AX C35 C33 SING N N 14 
0AX C35 N36 SING N N 15 
0AX C37 C38 SING N N 16 
0AX C37 N36 SING N N 17 
0AX C38 C39 DOUB Y N 18 
0AX C41 C40 DOUB Y N 19 
0AX C24 C33 SING N N 20 
0AX C24 N23 SING N N 21 
0AX C33 O34 SING N N 22 
0AX C39 C40 SING Y N 23 
0AX N23 C02 SING N N 24 
0AX O22 C12 DOUB N N 25 
0AX O01 C02 DOUB N N 26 
0AX C02 C03 SING N N 27 
0AX C14 C13 DOUB Y N 28 
0AX C14 C15 SING Y N 29 
0AX C12 C13 SING N N 30 
0AX C12 N11 SING N N 31 
0AX C13 O21 SING Y N 32 
0AX C03 N11 SING N N 33 
0AX C03 C04 SING N N 34 
0AX C15 C16 DOUB Y N 35 
0AX C15 C20 SING Y N 36 
0AX C16 C17 SING Y N 37 
0AX C04 C05 SING N N 38 
0AX O21 C20 SING Y N 39 
0AX C20 C19 DOUB Y N 40 
0AX C17 C18 DOUB Y N 41 
0AX C06 C05 SING N N 42 
0AX C06 C07 SING N N 43 
0AX C05 C10 SING N N 44 
0AX C19 C18 SING Y N 45 
0AX C07 C08 SING N N 46 
0AX C10 C09 SING N N 47 
0AX C08 C09 SING N N 48 
0AX C03 H1  SING N N 49 
0AX C04 H2  SING N N 50 
0AX C04 H3  SING N N 51 
0AX C05 H4  SING N N 52 
0AX C06 H5  SING N N 53 
0AX C06 H6  SING N N 54 
0AX C07 H7  SING N N 55 
0AX C07 H8  SING N N 56 
0AX C08 H9  SING N N 57 
0AX C08 H10 SING N N 58 
0AX C09 H11 SING N N 59 
0AX C09 H12 SING N N 60 
0AX C10 H13 SING N N 61 
0AX C10 H14 SING N N 62 
0AX C14 H15 SING N N 63 
0AX C16 H16 SING N N 64 
0AX C17 H17 SING N N 65 
0AX C18 H18 SING N N 66 
0AX C19 H19 SING N N 67 
0AX C24 H20 SING N N 68 
0AX C25 H21 SING N N 69 
0AX C25 H22 SING N N 70 
0AX C26 H23 SING N N 71 
0AX C27 H24 SING N N 72 
0AX C27 H25 SING N N 73 
0AX C28 H26 SING N N 74 
0AX C28 H27 SING N N 75 
0AX C29 H28 SING N N 76 
0AX C29 H29 SING N N 77 
0AX C33 H30 SING N N 78 
0AX C37 H31 SING N N 79 
0AX C37 H32 SING N N 80 
0AX C39 H33 SING N N 81 
0AX C40 H34 SING N N 82 
0AX C41 H35 SING N N 83 
0AX C42 H36 SING N N 84 
0AX C43 H37 SING N N 85 
0AX N11 H38 SING N N 86 
0AX N23 H39 SING N N 87 
0AX N30 H40 SING N N 88 
0AX N36 H41 SING N N 89 
0AX O34 H42 SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0AX InChI            InChI                1.06  "InChI=1S/C34H42N4O6/c39-30(34(43)36-21-23-12-5-2-6-13-23)26(19-25-15-9-17-35-31(25)40)37-32(41)27(18-22-10-3-1-4-11-22)38-33(42)29-20-24-14-7-8-16-28(24)44-29/h2,5-8,12-14,16,20,22,25-27,30,39H,1,3-4,9-11,15,17-19,21H2,(H,35,40)(H,36,43)(H,37,41)(H,38,42)/t25-,26-,27-,30+/m0/s1" 
0AX InChIKey         InChI                1.06  QBWBVQMSMXVSSF-NJBJSMFESA-N                                                                                                                                                                                                                                                              
0AX SMILES_CANONICAL CACTVS               3.385 "O[C@H]([C@H](C[C@@H]1CCCNC1=O)NC(=O)[C@H](CC2CCCCC2)NC(=O)c3oc4ccccc4c3)C(=O)NCc5ccccc5"                                                                                                                                                                                                
0AX SMILES           CACTVS               3.385 "O[CH]([CH](C[CH]1CCCNC1=O)NC(=O)[CH](CC2CCCCC2)NC(=O)c3oc4ccccc4c3)C(=O)NCc5ccccc5"                                                                                                                                                                                                     
0AX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)[C@@H]([C@H](C[C@@H]2CCCNC2=O)NC(=O)[C@H](CC3CCCCC3)NC(=O)c4cc5ccccc5o4)O"                                                                                                                                                                                             
0AX SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)C(C(CC2CCCNC2=O)NC(=O)C(CC3CCCCC3)NC(=O)c4cc5ccccc5o4)O"                                                                                                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           0AX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepiperidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-1-benzofuran-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0AX "Create component" 2022-09-29 PDBC 
0AX "Initial release"  2023-09-27 RCSB 
0AX "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            0AX 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C33 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
