data_8EX
#

_chem_comp.id                                   8EX
_chem_comp.name                                 "2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactopyranose"
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H15 N O12 S2"
_chem_comp.mon_nstd_parent_comp_id              NGA
_chem_comp.pdbx_synonyms                        
;[(2R,3R,4R,5R,6R)-5-acetamido-4,6-bis(oxidanyl)-2-(sulfooxymethyl)oxan-3-yl] hydrogen sulfate;
N-acetyl-4-sulfo-6-sulfo-beta-D-galactopyranose; 2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactose;
2-acetamido-2-deoxy-4,6-di-O-sulfo-D-galactose; 2-acetamido-2-deoxy-4,6-di-O-sulfo-galactose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-22
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       381.334
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    8EX
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5XS8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  8EX  "[(2R,3R,4R,5R,6R)-5-acetamido-4,6-bis(oxidanyl)-2-(sulfooxymethyl)oxan-3-yl] hydrogen sulfate"  PDB  ?  
2  8EX  N-acetyl-4-sulfo-6-sulfo-beta-D-galactopyranose                                                  PDB  ?  
3  8EX  "2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactose"                                            PDB  ?  
4  8EX  "2-acetamido-2-deoxy-4,6-di-O-sulfo-D-galactose"                                                 PDB  ?  
5  8EX  "2-acetamido-2-deoxy-4,6-di-O-sulfo-galactose"                                                   PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8EX  C1   C1   C  0  1  N  N  R  -2.607   0.543   0.078   1.384   1.894  -0.201  C1   8EX   1  
8EX  C2   C2   C  0  1  N  N  R  -3.626   0.779   1.188   2.318   0.681  -0.216  C2   8EX   2  
8EX  C3   C3   C  0  1  N  N  R  -3.520  -0.336   2.128   1.789  -0.349  -1.219  C3   8EX   3  
8EX  C4   C4   C  0  1  N  N  R  -3.798  -1.647   1.358   0.354  -0.725  -0.838  C4   8EX   4  
8EX  C5   C5   C  0  1  N  N  R  -2.908  -1.736   0.120  -0.505   0.542  -0.798  C5   8EX   5  
8EX  C6   C6   C  0  1  N  N  N  -3.277  -2.996  -0.664  -1.926   0.182  -0.360  C6   8EX   6  
8EX  C7   C7   C  0  1  N  N  N  -4.092   3.094   1.887   4.518   1.587   0.310  C7   8EX   7  
8EX  C8   C8   C  0  1  N  N  N  -3.532   4.360   2.582   5.902   2.022  -0.099  C8   8EX   8  
8EX  N2   N    N  0  1  N  N  N  -3.266   2.081   1.791   3.663   1.104  -0.614  N2   8EX   9  
8EX  O1   O1   O  0  1  N  Y  N  -3.158   1.573  -0.713   1.841   2.834   0.773  O1   8EX  10  
8EX  O3   O3   O  0  1  N  N  N  -4.553  -0.161   3.114   2.613  -1.515  -1.188  O3   8EX  11  
8EX  O4   O4   O  0  1  N  N  N  -5.154  -1.598   0.947   0.349  -1.347   0.448  O4   8EX  12  
8EX  O5   O5   O  0  1  N  N  N  -3.110  -0.541  -0.730   0.060   1.469   0.131  O5   8EX  13  
8EX  O6   O6   O  0  1  N  N  N  -2.551  -3.002  -1.841  -2.760   1.339  -0.451  O6   8EX  14  
8EX  O7   O7   O  0  1  N  N  N  -5.272   3.046   1.553   4.174   1.671   1.469  O7   8EX  15  
8EX  O1S  O1S  O  0  1  N  N  N  -1.257  -4.182  -3.435  -4.549  -0.194  -0.525  O1S  8EX  16  
8EX  O2S  O2S  O  0  1  N  N  N  -0.341  -3.585  -0.944  -4.227   1.000   1.482  O2S  8EX  17  
8EX  O3S  O3S  O  0  1  N  N  N  -2.022  -5.596  -1.690  -4.923   2.273  -0.375  O3S  8EX  18  
8EX  S1   S1   S  0  1  N  N  N  -1.517  -4.106  -1.949  -4.204   1.095  -0.036  S1   8EX  19  
8EX  S2   S2   S  0  1  N  N  N  -6.135  -2.808   0.920   0.114  -2.850   0.408  S2   8EX  20  
8EX  O5S  O5S  O  0  1  N  N  N  -6.472  -2.984  -0.479  -0.009  -3.274   1.759  O5S  8EX  21  
8EX  O6S  O6S  O  0  1  N  N  N  -5.426  -4.047   1.297  -0.892  -3.073  -0.570  O6S  8EX  22  
8EX  O4S  O4S  O  0  1  N  N  N  -7.293  -2.464   1.751   1.385  -3.491  -0.129  O4S  8EX  23  
8EX  H1   H1   H  0  1  N  N  N  -1.541   0.565   0.350   1.380   2.362  -1.185  H1   8EX  24  
8EX  H2   H2   H  0  1  N  N  N  -4.637   0.825   0.757   2.355   0.236   0.778  H2   8EX  25  
8EX  H3   H3   H  0  1  N  N  N  -2.522  -0.374   2.589   1.801   0.079  -2.222  H3   8EX  26  
8EX  H4   H4   H  0  1  N  N  N  -3.609  -2.508   2.016  -0.051  -1.416  -1.578  H4   8EX  27  
8EX  H5   H5   H  0  1  N  N  N  -1.855  -1.799   0.433  -0.533   0.993  -1.790  H5   8EX  28  
8EX  H61  H6   H  0  1  N  N  N  -4.353  -2.991  -0.891  -2.319  -0.601  -1.008  H61  8EX  29  
8EX  H62  H7   H  0  1  N  N  N  -3.031  -3.889  -0.071  -1.909  -0.174   0.670  H62  8EX  30  
8EX  H81  H8   H  0  1  N  N  N  -4.334   5.105   2.690   6.028   1.874  -1.171  H81  8EX  31  
8EX  H82  H9   H  0  1  N  N  N  -3.145   4.091   3.576   6.036   3.078   0.140  H82  8EX  32  
8EX  H83  H10  H  0  1  N  N  N  -2.719   4.783   1.973   6.642   1.431   0.439  H83  8EX  33  
8EX  HN2  H11  H  0  1  N  N  N  -2.338   2.195   2.146   3.939   1.037  -1.541  HN2  8EX  34  
8EX  HO1  H12  H  0  1  N  Y  N  -2.933   2.416  -0.337   1.295   3.630   0.838  HO1  8EX  35  
8EX  HO3  H13  H  0  1  N  Y  N  -4.514  -0.871   3.744   3.539  -1.349  -1.412  HO3  8EX  36  
8EX  H14  H14  H  0  1  N  N  N   0.435  -3.372  -1.448  -5.106   0.845   1.854  H14  8EX  37  
8EX  H15  H15  H  0  1  N  N  N  -8.071  -2.418   1.208   1.342  -4.455  -0.196  H15  8EX  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8EX  O1S  S1   DOUB  N  N   1  
8EX  S1   O6   SING  N  N   2  
8EX  S1   O3S  DOUB  N  N   3  
8EX  S1   O2S  SING  N  N   4  
8EX  O6   C6   SING  N  N   5  
8EX  O5   C1   SING  N  N   6  
8EX  O5   C5   SING  N  N   7  
8EX  O1   C1   SING  N  N   8  
8EX  C6   C5   SING  N  N   9  
8EX  O5S  S2   DOUB  N  N  10  
8EX  C1   C2   SING  N  N  11  
8EX  C5   C4   SING  N  N  12  
8EX  S2   O4   SING  N  N  13  
8EX  S2   O6S  DOUB  N  N  14  
8EX  S2   O4S  SING  N  N  15  
8EX  O4   C4   SING  N  N  16  
8EX  C2   N2   SING  N  N  17  
8EX  C2   C3   SING  N  N  18  
8EX  C4   C3   SING  N  N  19  
8EX  O7   C7   DOUB  N  N  20  
8EX  N2   C7   SING  N  N  21  
8EX  C7   C8   SING  N  N  22  
8EX  C3   O3   SING  N  N  23  
8EX  C1   H1   SING  N  N  24  
8EX  C2   H2   SING  N  N  25  
8EX  C3   H3   SING  N  N  26  
8EX  C4   H4   SING  N  N  27  
8EX  C5   H5   SING  N  N  28  
8EX  C6   H61  SING  N  N  29  
8EX  C6   H62  SING  N  N  30  
8EX  C8   H81  SING  N  N  31  
8EX  C8   H82  SING  N  N  32  
8EX  C8   H83  SING  N  N  33  
8EX  N2   HN2  SING  N  N  34  
8EX  O1   HO1  SING  N  N  35  
8EX  O3   HO3  SING  N  N  36  
8EX  O2S  H14  SING  N  N  37  
8EX  O4S  H15  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8EX  InChI             InChI                 1.03   "InChI=1S/C8H15NO12S2/c1-3(10)9-5-6(11)7(21-23(16,17)18)4(20-8(5)12)2-19-22(13,14)15/h4-8,11-12H,2H2,1H3,(H,9,10)(H,13,14,15)(H,16,17,18)/t4-,5-,6-,7+,8-/m1/s1"  
8EX  InChIKey          InChI                 1.03   KWDXXNWKTRGMDM-UIAUGNHASA-N  
8EX  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@H]1[C@H](O)O[C@H](CO[S](O)(=O)=O)[C@H](O[S](O)(=O)=O)[C@@H]1O"  
8EX  SMILES            CACTVS                3.385  "CC(=O)N[CH]1[CH](O)O[CH](CO[S](O)(=O)=O)[CH](O[S](O)(=O)=O)[CH]1O"  
8EX  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@H]1O)COS(=O)(=O)O)OS(=O)(=O)O)O"  
8EX  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(=O)NC1C(C(C(OC1O)COS(=O)(=O)O)OS(=O)(=O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8EX  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  2.0.6  "[(2~{R},3~{R},4~{R},5~{R},6~{R})-5-acetamido-4,6-bis(oxidanyl)-2-(sulfooxymethyl)oxan-3-yl] hydrogen sulfate"  
8EX  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    "DGalpNAc[4S,6S]b"  
8EX  "COMMON NAME"                          GMML                  1.0    N-acetyl-4-sulfo-6-sulfo-b-D-galactopyranose  
#
_pdbx_chem_comp_related.comp_id            8EX
_pdbx_chem_comp_related.related_comp_id    NGA
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  8EX  C1   NGA  C1   "Carbohydrate core"  
 2  8EX  C2   NGA  C2   "Carbohydrate core"  
 3  8EX  C3   NGA  C3   "Carbohydrate core"  
 4  8EX  C4   NGA  C4   "Carbohydrate core"  
 5  8EX  C5   NGA  C5   "Carbohydrate core"  
 6  8EX  C6   NGA  C6   "Carbohydrate core"  
 7  8EX  C7   NGA  C7   "Carbohydrate core"  
 8  8EX  C8   NGA  C8   "Carbohydrate core"  
 9  8EX  N2   NGA  N2   "Carbohydrate core"  
10  8EX  O1   NGA  O1   "Carbohydrate core"  
11  8EX  O3   NGA  O3   "Carbohydrate core"  
12  8EX  O4   NGA  O4   "Carbohydrate core"  
13  8EX  O5   NGA  O5   "Carbohydrate core"  
14  8EX  O6   NGA  O6   "Carbohydrate core"  
15  8EX  O7   NGA  O7   "Carbohydrate core"  
16  8EX  H1   NGA  H1   "Carbohydrate core"  
17  8EX  H83  NGA  H83  "Carbohydrate core"  
18  8EX  HN2  NGA  HN2  "Carbohydrate core"  
19  8EX  HO1  NGA  HO1  "Carbohydrate core"  
20  8EX  HO3  NGA  HO3  "Carbohydrate core"  
21  8EX  H2   NGA  H2   "Carbohydrate core"  
22  8EX  H3   NGA  H3   "Carbohydrate core"  
23  8EX  H4   NGA  H4   "Carbohydrate core"  
24  8EX  H5   NGA  H5   "Carbohydrate core"  
25  8EX  H61  NGA  H61  "Carbohydrate core"  
26  8EX  H62  NGA  H62  "Carbohydrate core"  
27  8EX  H81  NGA  H81  "Carbohydrate core"  
28  8EX  H82  NGA  H82  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
8EX  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
8EX  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
8EX  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
8EX  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8EX  "Create component"          2017-06-22  PDBJ  
8EX  "Initial release"           2018-01-17  RCSB  
8EX  "Other modification"        2020-07-03  RCSB  
8EX  "Modify parent residue"     2020-07-17  RCSB  
8EX  "Modify name"               2020-07-17  RCSB  
8EX  "Modify synonyms"           2020-07-17  RCSB  
8EX  "Modify linking type"       2020-07-17  RCSB  
8EX  "Modify atom id"            2020-07-17  RCSB  
8EX  "Modify component atom id"  2020-07-17  RCSB  
8EX  "Modify leaving atom flag"  2020-07-17  RCSB  
##
