data_DPX
# 
_chem_comp.id                                    DPX 
_chem_comp.name                                  "MONO-{4-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-AMINO]-2-HYDROXY-3-MERCAPTO-PENT-3-ENYL-PHOSPHONO} ESTER" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H20 N4 O8 P2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        430.311 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DPX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1ZPD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DPX C4   C4   C 0 1 N N N -14.525 -10.977 -23.900 -1.025 -0.844 -1.876 C4   DPX 1  
DPX C5   C5   C 0 1 N N N -15.071 -12.149 -24.368 -1.274 0.061  -0.942 C5   DPX 2  
DPX O21  O21  O 0 1 N N N -14.178 -15.070 -29.672 1.412  -0.719 3.401  O21  DPX 3  
DPX O22  O22  O 0 1 N N N -15.575 -16.350 -27.906 -0.394 -0.420 5.287  O22  DPX 4  
DPX O26  O26  O 0 1 N N N -17.724 -15.640 -27.170 0.432  -0.376 7.782  O26  DPX 5  
DPX O25  O25  O 0 1 N N N -17.568 -17.871 -28.057 0.979  1.497  6.182  O25  DPX 6  
DPX O24  O24  O 0 1 N N N -17.145 -15.915 -29.571 2.162  -0.703 5.830  O24  DPX 7  
DPX P23  P23  P 0 1 N N N -17.093 -16.521 -28.212 0.798  0.031  6.269  P23  DPX 8  
DPX P19  P19  P 0 1 N N S -14.300 -15.466 -28.253 0.035  0.015  3.799  P19  DPX 9  
DPX O20  O20  O 0 1 N N N -13.044 -15.965 -27.754 0.228  1.482  3.751  O20  DPX 10 
DPX O18  O18  O 0 1 N N N -14.587 -14.006 -27.569 -1.118 -0.408 2.760  O18  DPX 11 
DPX C17  C17  C 0 1 N N N -14.582 -13.922 -26.121 -0.679 0.002  1.464  C17  DPX 12 
DPX C16  C16  C 0 1 N N R -15.275 -12.598 -25.816 -1.737 -0.372 0.424  C16  DPX 13 
DPX C15  C15  C 0 1 N N N -13.990 -9.882  -24.807 -1.463 -2.272 -1.676 C15  DPX 14 
DPX N3   N3   N 0 1 N N N -14.465 -10.865 -22.557 -0.355 -0.474 -3.050 N3   DPX 15 
DPX O27  O27  O 0 1 N N N -16.568 -12.454 -26.130 -2.968 0.280  0.740  O27  DPX 16 
DPX S1   S1   S 0 1 N N N -15.653 -13.206 -23.110 -1.065 1.774  -1.298 S1   DPX 17 
DPX C6   C6   C 0 1 N N N -13.867 -9.588  -21.899 -0.224 -1.432 -4.151 C6   DPX 18 
DPX C7   C7   C 0 1 Y N N -12.401 -9.709  -21.604 0.420  -0.754 -5.332 C7   DPX 19 
DPX C8   C8   C 0 1 Y N N -11.844 -10.758 -20.730 -0.336 0.018  -6.215 C8   DPX 20 
DPX N9   N9   N 0 1 Y N N -10.516 -10.827 -20.483 0.272  0.604  -7.242 N9   DPX 21 
DPX C10  C10  C 0 1 Y N N -9.717  -9.938  -21.040 1.567  0.451  -7.432 C10  DPX 22 
DPX N11  N11  N 0 1 Y N N -10.191 -8.838  -21.737 2.308  -0.275 -6.621 N11  DPX 23 
DPX C12  C12  C 0 1 Y N N -11.497 -8.825  -22.117 1.774  -0.886 -5.572 C12  DPX 24 
DPX N13  N13  N 0 1 N N N -12.627 -11.700 -20.188 -1.697 0.181  -6.018 N13  DPX 25 
DPX C14  C14  C 0 1 N N N -8.268  -10.046 -20.877 2.218  1.126  -8.612 C14  DPX 26 
DPX HOL  HOL  H 0 1 N N N -13.416 -14.541 -29.879 1.243  -1.670 3.445  HOL  DPX 27 
DPX HOQ  HOQ  H 0 1 N N N -18.649 -15.744 -27.356 1.171  -0.088 8.336  HOQ  DPX 28 
DPX HOO  HOO  H 0 1 N N N -18.070 -16.019 -29.757 2.002  -1.654 5.900  HOO  DPX 29 
DPX H171 1H17 H 0 0 N N N -15.037 -14.803 -25.611 0.259  -0.495 1.223  H171 DPX 30 
DPX H172 2H17 H 0 0 N N N -13.571 -14.023 -25.662 -0.530 1.082  1.457  H172 DPX 31 
DPX H16  H16  H 0 1 N N N -14.740 -11.938 -26.539 -1.886 -1.452 0.431  H16  DPX 32 
DPX H151 1H15 H 0 0 N N N -13.547 -8.931  -24.427 -2.002 -2.358 -0.733 H151 DPX 33 
DPX H152 2H15 H 0 0 N N N -13.237 -10.350 -25.483 -2.115 -2.571 -2.496 H152 DPX 34 
DPX H153 3H15 H 0 0 N N N -14.808 -9.607  -25.512 -0.587 -2.921 -1.654 H153 DPX 35 
DPX HN3  HN3  H 0 1 N N N -13.968 -11.676 -22.189 0.021  0.414  -3.133 HN3  DPX 36 
DPX HOR  HOR  H 0 1 N N N -16.694 -12.732 -27.029 -2.793 1.230  0.724  HOR  DPX 37 
DPX HS1  HS1  H 0 1 N N N -16.030 -14.015 -23.433 -0.798 1.708  -2.615 HS1  DPX 38 
DPX H61  1H6  H 0 1 N N N -14.073 -8.686  -22.521 0.394  -2.271 -3.832 H61  DPX 39 
DPX H62  2H6  H 0 1 N N N -14.435 -9.310  -20.980 -1.211 -1.796 -4.436 H62  DPX 40 
DPX H12  H12  H 0 1 N N N -11.830 -8.080  -22.858 2.390  -1.479 -4.913 H12  DPX 41 
DPX HND1 1HND H 0 0 N N N -12.241 -12.425 -19.583 -2.215 0.726  -6.631 HND1 DPX 42 
DPX HND2 2HND H 0 0 N N N -13.138 -12.157 -20.942 -2.134 -0.248 -5.266 HND2 DPX 43 
DPX H141 1H14 H 0 0 N N N -7.592  -9.294  -21.348 2.192  0.459  -9.473 H141 DPX 44 
DPX H142 2H14 H 0 0 N N N -8.039  -10.088 -19.786 1.681  2.045  -8.847 H142 DPX 45 
DPX H143 3H14 H 0 0 N N N -7.951  -11.061 -21.212 3.254  1.364  -8.368 H143 DPX 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DPX C4  C5   DOUB N Z 1  
DPX C4  C15  SING N N 2  
DPX C4  N3   SING N N 3  
DPX C5  C16  SING N N 4  
DPX C5  S1   SING N N 5  
DPX O21 P19  SING N N 6  
DPX O21 HOL  SING N N 7  
DPX O22 P23  SING N N 8  
DPX O22 P19  SING N N 9  
DPX O26 P23  SING N N 10 
DPX O26 HOQ  SING N N 11 
DPX O25 P23  DOUB N N 12 
DPX O24 P23  SING N N 13 
DPX O24 HOO  SING N N 14 
DPX P19 O20  DOUB N N 15 
DPX P19 O18  SING N N 16 
DPX O18 C17  SING N N 17 
DPX C17 C16  SING N N 18 
DPX C17 H171 SING N N 19 
DPX C17 H172 SING N N 20 
DPX C16 O27  SING N N 21 
DPX C16 H16  SING N N 22 
DPX C15 H151 SING N N 23 
DPX C15 H152 SING N N 24 
DPX C15 H153 SING N N 25 
DPX N3  C6   SING N N 26 
DPX N3  HN3  SING N N 27 
DPX O27 HOR  SING N N 28 
DPX S1  HS1  SING N N 29 
DPX C6  C7   SING N N 30 
DPX C6  H61  SING N N 31 
DPX C6  H62  SING N N 32 
DPX C7  C8   SING Y N 33 
DPX C7  C12  DOUB Y N 34 
DPX C8  N9   DOUB Y N 35 
DPX C8  N13  SING N N 36 
DPX N9  C10  SING Y N 37 
DPX C10 N11  DOUB Y N 38 
DPX C10 C14  SING N N 39 
DPX N11 C12  SING Y N 40 
DPX C12 H12  SING N N 41 
DPX N13 HND1 SING N N 42 
DPX N13 HND2 SING N N 43 
DPX C14 H141 SING N N 44 
DPX C14 H142 SING N N 45 
DPX C14 H143 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DPX SMILES           ACDLabs              10.04 "O=P(O)(O)OP(=O)(O)OCC(O)C(/S)=C(/NCc1cnc(nc1N)C)C"                                                                                                                              
DPX SMILES_CANONICAL CACTVS               3.341 "C\C(NCc1cnc(C)nc1N)=C(S)/[C@H](O)CO[P@@](O)(=O)O[P](O)(O)=O"                                                                                                                    
DPX SMILES           CACTVS               3.341 "CC(NCc1cnc(C)nc1N)=C(S)[CH](O)CO[P](O)(=O)O[P](O)(O)=O"                                                                                                                         
DPX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1ncc(c(n1)N)CN/C(=C(/[C@@H](CO[P@](=O)(O)OP(=O)(O)O)O)\S)/C"                                                                                                                  
DPX SMILES           "OpenEye OEToolkits" 1.5.0 "Cc1ncc(c(n1)N)CNC(=C(C(COP(=O)(O)OP(=O)(O)O)O)S)C"                                                                                                                              
DPX InChI            InChI                1.03  "InChI=1S/C11H20N4O8P2S/c1-6(13-3-8-4-14-7(2)15-11(8)12)10(26)9(16)5-22-25(20,21)23-24(17,18)19/h4,9,13,16,26H,3,5H2,1-2H3,(H,20,21)(H2,12,14,15)(H2,17,18,19)/b10-6-/t9-/m1/s1" 
DPX InChIKey         InChI                1.03  XHCFSNVIKLFNIT-WPVMNKCKSA-N                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DPX "SYSTEMATIC NAME" ACDLabs              10.04 "(2R,3Z)-4-{[(4-amino-2-methylpyrimidin-5-yl)methyl]amino}-2-hydroxy-3-sulfanylpent-3-en-1-yl trihydrogen diphosphate"    
DPX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(Z,2R)-4-[(4-amino-2-methyl-pyrimidin-5-yl)methylamino]-2-hydroxy-3-sulfanyl-pent-3-enyl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DPX "Create component"  1999-07-08 RCSB 
DPX "Modify descriptor" 2011-06-04 RCSB 
# 
