data_DUX
#

_chem_comp.id                                   DUX
_chem_comp.name                                 "2,3-DEOXY-3-FLUORO-5-O-TRITYLURIDINE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H25 F N2 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "1-{(2S,5S)-4-FLUORO-5-[(TRITYLOXY)METHYL]TETRAHYDROFURAN-2-YL}PYRIMIDINE-2,4(1H,3H)-DIONE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-05-05
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       472.508
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DUX
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1VYQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DUX  "F3'"   "F3'"   F  0  1  N  N  N  37.829   -8.962  -12.615   4.088  -0.520  -1.486  "F3'"   DUX   1  
DUX  "C3'"   "C3'"   C  0  1  N  N  S  37.380   -9.638  -11.556   2.848   0.127  -1.494  "C3'"   DUX   2  
DUX  "C2'"   "C2'"   C  0  1  N  N  N  36.218  -10.547  -11.964   2.346   0.319  -2.945  "C2'"   DUX   3  
DUX  "C1'"   "C1'"   C  0  1  N  N  R  36.522  -11.802  -11.163   1.376  -0.877  -3.114  "C1'"   DUX   4  
DUX  N1      N1      N  0  1  N  N  N  35.940  -11.840   -9.817   0.380  -0.592  -4.150  N1      DUX   5  
DUX  C2      C2      C  0  1  N  N  N  35.849  -13.104   -9.174  -0.448   0.457  -4.006  C2      DUX   6  
DUX  N3      N3      N  0  1  N  N  N  35.303  -13.186   -7.936  -1.369   0.744  -4.944  N3      DUX   7  
DUX  C4      C4      C  0  1  N  N  N  34.865  -12.083   -7.278  -1.482  -0.026  -6.045  C4      DUX   8  
DUX  C5      C5      C  0  1  N  N  N  34.951  -10.821   -7.863  -0.620  -1.137  -6.206  C5      DUX   9  
DUX  C6      C6      C  0  1  N  N  N  35.494  -10.732   -9.149   0.298  -1.400  -5.252  C6      DUX  10  
DUX  O4      O4      O  0  1  N  N  N  34.402  -12.157   -6.131  -2.319   0.230  -6.892  O4      DUX  11  
DUX  O2      O2      O  0  1  N  N  N  36.272  -14.117   -9.780  -0.358   1.161  -3.019  O2      DUX  12  
DUX  "O4'"   "O4'"   O  0  1  N  N  N  37.944  -11.828  -10.984   0.749  -0.988  -1.818  "O4'"   DUX  13  
DUX  "C4'"   "C4'"   C  0  1  N  N  R  38.522  -10.505  -11.094   1.774  -0.757  -0.832  "C4'"   DUX  14  
DUX  "C5'"   "C5'"   C  0  1  N  N  N  39.152   -9.953   -9.822   1.176  -0.042   0.380  "C5'"   DUX  15  
DUX  "O5'"   "O5'"   O  0  1  N  N  N  40.521  -10.439   -9.666   0.170  -0.868   0.971  "O5'"   DUX  16  
DUX  C17     C17     C  0  1  N  N  N  41.140  -10.542   -8.348  -0.272  -0.197   2.153  C17     DUX  17  
DUX  C30     C30     C  0  1  Y  N  N  41.722   -9.167   -8.013   0.853  -0.144   3.153  C30     DUX  18  
DUX  C31     C31     C  0  1  Y  N  N  41.558   -8.049   -8.870   1.894  -1.049   3.070  C31     DUX  19  
DUX  C32     C32     C  0  1  Y  N  N  42.112   -6.810   -8.539   2.927  -1.000   3.987  C32     DUX  20  
DUX  C33     C33     C  0  1  Y  N  N  42.872   -6.658   -7.374   2.919  -0.045   4.987  C33     DUX  21  
DUX  C34     C34     C  0  1  Y  N  N  43.066   -7.753   -6.536   1.878   0.859   5.069  C34     DUX  22  
DUX  C35     C35     C  0  1  Y  N  N  42.493   -8.999   -6.843   0.847   0.813   4.149  C35     DUX  23  
DUX  C24     C24     C  0  1  Y  N  N  40.038  -11.031   -7.431  -0.701   1.204   1.803  C24     DUX  24  
DUX  C25     C25     C  0  1  Y  N  N  39.548  -10.275   -6.365  -2.028   1.472   1.526  C25     DUX  25  
DUX  C26     C26     C  0  1  Y  N  N  38.509  -10.752   -5.564  -2.421   2.758   1.205  C26     DUX  26  
DUX  C27     C27     C  0  1  Y  N  N  37.909  -11.971   -5.842  -1.487   3.776   1.163  C27     DUX  27  
DUX  C28     C28     C  0  1  Y  N  N  38.369  -12.744   -6.904  -0.160   3.508   1.442  C28     DUX  28  
DUX  C29     C29     C  0  1  Y  N  N  39.422  -12.275   -7.704   0.231   2.223   1.766  C29     DUX  29  
DUX  C18     C18     C  0  1  Y  N  N  42.287  -11.539   -8.474  -1.437  -0.945   2.748  C18     DUX  30  
DUX  C19     C19     C  0  1  Y  N  N  43.101  -11.563   -9.624  -2.131  -1.865   1.984  C19     DUX  31  
DUX  C20     C20     C  0  1  Y  N  N  44.174  -12.479   -9.729  -3.199  -2.552   2.530  C20     DUX  32  
DUX  C21     C21     C  0  1  Y  N  N  44.440  -13.407   -8.711  -3.575  -2.318   3.840  C21     DUX  33  
DUX  C22     C22     C  0  1  Y  N  N  43.647  -13.385   -7.564  -2.881  -1.398   4.604  C22     DUX  34  
DUX  C23     C23     C  0  1  Y  N  N  42.593  -12.466   -7.456  -1.809  -0.715   4.059  C23     DUX  35  
DUX  "H3'"   "H3'"   H  0  1  N  N  N  37.066   -8.938  -10.747   2.918   1.088  -0.984  "H3'"   DUX  36  
DUX  "H2'1"  "1H2'"  H  0  0  N  N  N  36.096  -10.700  -13.062   1.817   1.266  -3.052  "H2'1"  DUX  37  
DUX  "H2'2"  "2H2'"  H  0  0  N  N  N  35.201  -10.118  -11.809   3.171   0.254  -3.654  "H2'2"  DUX  38  
DUX  "H1'"   "H1'"   H  0  1  N  N  N  36.199  -12.701  -11.737   1.927  -1.787  -3.353  "H1'"   DUX  39  
DUX  H3      H3      H  0  1  N  N  N  35.219  -14.099   -7.488  -1.957   1.507  -4.827  H3      DUX  40  
DUX  H5      H5      H  0  1  N  N  N  34.602   -9.921   -7.329  -0.695  -1.766  -7.081  H5      DUX  41  
DUX  H6      H6      H  0  1  N  N  N  35.564   -9.745   -9.636   0.965  -2.243  -5.357  H6      DUX  42  
DUX  "H4'"   "H4'"   H  0  1  N  N  N  39.298  -10.524  -11.894   2.213  -1.706  -0.525  "H4'"   DUX  43  
DUX  "H5'1"  "1H5'"  H  0  0  N  N  N  38.530  -10.177   -8.924   1.961   0.152   1.111  "H5'1"  DUX  44  
DUX  "H5'2"  "2H5'"  H  0  0  N  N  N  39.104   -8.840   -9.788   0.731   0.900   0.064  "H5'2"  DUX  45  
DUX  H31     H31     H  0  1  N  N  N  40.987   -8.159   -9.807   1.901  -1.795   2.289  H31     DUX  46  
DUX  H32     H32     H  0  1  N  N  N  41.949   -5.944   -9.202   3.741  -1.708   3.923  H32     DUX  47  
DUX  H33     H33     H  0  1  N  N  N  43.314   -5.679   -7.122   3.726  -0.008   5.704  H33     DUX  48  
DUX  H34     H34     H  0  1  N  N  N  43.675   -7.641   -5.623   1.871   1.605   5.851  H34     DUX  49  
DUX  H35     H35     H  0  1  N  N  N  42.647   -9.854   -6.163   0.034   1.521   4.214  H35     DUX  50  
DUX  H25     H25     H  0  1  N  N  N  39.988   -9.286   -6.152  -2.758   0.676   1.559  H25     DUX  51  
DUX  H26     H26     H  0  1  N  N  N  38.163  -10.155   -4.704  -3.458   2.967   0.988  H26     DUX  52  
DUX  H27     H27     H  0  1  N  N  N  37.069  -12.327   -5.223  -1.794   4.780   0.912  H27     DUX  53  
DUX  H28     H28     H  0  1  N  N  N  37.907  -13.723   -7.116   0.569   4.303   1.408  H28     DUX  54  
DUX  H29     H29     H  0  1  N  N  N  39.773  -12.883   -8.555   1.268   2.014   1.984  H29     DUX  55  
DUX  H19     H19     H  0  1  N  N  N  42.900  -10.861  -10.450  -1.838  -2.048   0.961  H19     DUX  56  
DUX  H20     H20     H  0  1  N  N  N  44.813  -12.463  -10.628  -3.742  -3.270   1.933  H20     DUX  57  
DUX  H21     H21     H  0  1  N  N  N  45.259  -14.139   -8.816  -4.410  -2.853   4.266  H21     DUX  58  
DUX  H22     H22     H  0  1  N  N  N  43.849  -14.091   -6.741  -3.174  -1.215   5.627  H22     DUX  59  
DUX  H23     H23     H  0  1  N  N  N  41.980  -12.468   -6.539  -1.267   0.002   4.656  H23     DUX  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DUX  "F3'"  "C3'"   SING  N  N   1  
DUX  "C3'"  "C2'"   SING  N  N   2  
DUX  "C3'"  "C4'"   SING  N  N   3  
DUX  "C3'"  "H3'"   SING  N  N   4  
DUX  "C2'"  "C1'"   SING  N  N   5  
DUX  "C2'"  "H2'1"  SING  N  N   6  
DUX  "C2'"  "H2'2"  SING  N  N   7  
DUX  "C1'"  N1      SING  N  N   8  
DUX  "C1'"  "O4'"   SING  N  N   9  
DUX  "C1'"  "H1'"   SING  N  N  10  
DUX  N1     C2      SING  N  N  11  
DUX  N1     C6      SING  N  N  12  
DUX  C2     N3      SING  N  N  13  
DUX  C2     O2      DOUB  N  N  14  
DUX  N3     C4      SING  N  N  15  
DUX  N3     H3      SING  N  N  16  
DUX  C4     C5      SING  N  N  17  
DUX  C4     O4      DOUB  N  N  18  
DUX  C5     C6      DOUB  N  N  19  
DUX  C5     H5      SING  N  N  20  
DUX  C6     H6      SING  N  N  21  
DUX  "O4'"  "C4'"   SING  N  N  22  
DUX  "C4'"  "C5'"   SING  N  N  23  
DUX  "C4'"  "H4'"   SING  N  N  24  
DUX  "C5'"  "O5'"   SING  N  N  25  
DUX  "C5'"  "H5'1"  SING  N  N  26  
DUX  "C5'"  "H5'2"  SING  N  N  27  
DUX  "O5'"  C17     SING  N  N  28  
DUX  C17    C30     SING  N  N  29  
DUX  C17    C24     SING  N  N  30  
DUX  C17    C18     SING  N  N  31  
DUX  C30    C31     DOUB  Y  N  32  
DUX  C30    C35     SING  Y  N  33  
DUX  C31    C32     SING  Y  N  34  
DUX  C31    H31     SING  N  N  35  
DUX  C32    C33     DOUB  Y  N  36  
DUX  C32    H32     SING  N  N  37  
DUX  C33    C34     SING  Y  N  38  
DUX  C33    H33     SING  N  N  39  
DUX  C34    C35     DOUB  Y  N  40  
DUX  C34    H34     SING  N  N  41  
DUX  C35    H35     SING  N  N  42  
DUX  C24    C25     DOUB  Y  N  43  
DUX  C24    C29     SING  Y  N  44  
DUX  C25    C26     SING  Y  N  45  
DUX  C25    H25     SING  N  N  46  
DUX  C26    C27     DOUB  Y  N  47  
DUX  C26    H26     SING  N  N  48  
DUX  C27    C28     SING  Y  N  49  
DUX  C27    H27     SING  N  N  50  
DUX  C28    C29     DOUB  Y  N  51  
DUX  C28    H28     SING  N  N  52  
DUX  C29    H29     SING  N  N  53  
DUX  C18    C19     DOUB  Y  N  54  
DUX  C18    C23     SING  Y  N  55  
DUX  C19    C20     SING  Y  N  56  
DUX  C19    H19     SING  N  N  57  
DUX  C20    C21     DOUB  Y  N  58  
DUX  C20    H20     SING  N  N  59  
DUX  C21    C22     SING  Y  N  60  
DUX  C21    H21     SING  N  N  61  
DUX  C22    C23     DOUB  Y  N  62  
DUX  C22    H22     SING  N  N  63  
DUX  C23    H23     SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DUX  SMILES            ACDLabs               10.04  "O=C1NC(=O)N(C=C1)C2OC(C(F)C2)COC(c3ccccc3)(c4ccccc4)c5ccccc5"  
DUX  SMILES_CANONICAL  CACTVS                3.341  "F[C@H]1C[C@@H](O[C@@H]1COC(c2ccccc2)(c3ccccc3)c4ccccc4)N5C=CC(=O)NC5=O"  
DUX  SMILES            CACTVS                3.341  "F[CH]1C[CH](O[CH]1COC(c2ccccc2)(c3ccccc3)c4ccccc4)N5C=CC(=O)NC5=O"  
DUX  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1ccc(cc1)C(c2ccccc2)(c3ccccc3)OC[C@@H]4[C@H](C[C@@H](O4)N5C=CC(=O)NC5=O)F"  
DUX  SMILES            "OpenEye OEToolkits"  1.5.0  "c1ccc(cc1)C(c2ccccc2)(c3ccccc3)OCC4C(CC(O4)N5C=CC(=O)NC5=O)F"  
DUX  InChI             InChI                 1.03   "InChI=1S/C28H25FN2O4/c29-23-18-26(31-17-16-25(32)30-27(31)33)35-24(23)19-34-28(20-10-4-1-5-11-20,21-12-6-2-7-13-21)22-14-8-3-9-15-22/h1-17,23-24,26H,18-19H2,(H,30,32,33)/t23-,24+,26+/m0/s1"  
DUX  InChIKey          InChI                 1.03   GJNIPWYJQUGERM-BFLUCZKCSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DUX  "SYSTEMATIC NAME"  ACDLabs               10.04  "2',3'-dideoxy-3'-fluoro-5'-O-trityluridine"  
DUX  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "1-[(2R,4S,5R)-4-fluoro-5-(trityloxymethyl)oxolan-2-yl]pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DUX  "Create component"   2004-05-05  EBI   
DUX  "Modify descriptor"  2011-06-04  RCSB  
DUX  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DUX
_pdbx_chem_comp_synonyms.name        "1-{(2S,5S)-4-FLUORO-5-[(TRITYLOXY)METHYL]TETRAHYDROFURAN-2-YL}PYRIMIDINE-2,4(1H,3H)-DIONE"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
