data_DX
# 
_chem_comp.id                                    DX 
_chem_comp.name                                  "[(2~{R},3~{S},5~{R})-5-[2,4-bis(oxidanylidene)imidazo[1,2-a][1,3,5]triazin-8-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
_chem_comp.type                                  "DNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H13 N4 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-07-19 
_chem_comp.pdbx_modified_date                    2018-03-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        348.206 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5KWC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DX P     P1  P 0 1 N N N -20.111 20.147 2.417  4.861  -1.083 -0.285 P     DX 1  
DX OP1   O1  O 0 1 N N N -20.996 21.318 2.666  4.848  -1.705 1.058  OP1   DX 2  
DX "O5'" O2  O 0 1 N N N -18.570 20.629 2.360  3.488  -0.274 -0.515 "O5'" DX 3  
DX "C5'" C1  C 0 1 N N N -17.798 21.052 3.523  3.023  0.740  0.378  "C5'" DX 4  
DX "C4'" C2  C 0 1 N N R -17.002 22.341 3.333  1.695  1.301  -0.135 "C4'" DX 5  
DX "C3'" C3  C 0 1 N N S -17.641 23.488 2.542  1.216  2.459  0.768  "C3'" DX 6  
DX "O3'" O3  O 0 1 N N N -17.348 24.801 3.022  1.557  3.720  0.189  "O3'" DX 7  
DX "C2'" C4  C 0 1 N N N -16.934 23.488 1.208  -0.318 2.285  0.820  "C2'" DX 8  
DX "C1'" C5  C 0 1 N N R -15.625 22.762 1.426  -0.585 1.042  -0.058 "C1'" DX 9  
DX "O4'" O4  O 0 1 N N N -15.731 22.095 2.686  0.657  0.302  -0.040 "O4'" DX 10 
DX N9    N1  N 0 1 N N N -15.401 21.688 0.475  -1.667 0.237  0.513  N9    DX 11 
DX C4    C6  C 0 1 N N N -15.743 21.586 -0.859 -2.879 0.007  -0.058 C4    DX 12 
DX N5    N2  N 0 1 N N N -15.278 20.341 -1.242 -3.590 -0.792 0.791  N5    DX 13 
DX C7    C7  C 0 1 N N N -14.664 19.678 -0.192 -2.795 -1.051 1.896  C7    DX 14 
DX C8    C8  C 0 1 N N N -14.763 20.514 0.801  -1.633 -0.429 1.726  C8    DX 15 
DX N3    N3  N 0 1 N N N -16.388 22.502 -1.620 -3.417 0.405  -1.202 N3    DX 16 
DX C2    C9  C 0 1 N N N -16.563 22.090 -2.865 -4.655 0.030  -1.533 C2    DX 17 
DX O2    O5  O 0 1 N N N -17.183 22.873 -3.758 -5.138 0.402  -2.588 O2    DX 18 
DX N1    N4  N 0 1 N N N -16.136 20.873 -3.332 -5.372 -0.759 -0.710 N1    DX 19 
DX C6    C10 C 0 1 N N N -15.470 19.913 -2.574 -4.840 -1.173 0.458  C6    DX 20 
DX O6    O6  O 0 1 N N N -15.119 18.838 -3.081 -5.482 -1.885 1.206  O6    DX 21 
DX OP2   O7  O 0 1 N N N -20.257 18.961 3.312  6.106  -0.069 -0.395 OP2   DX 22 
DX H2    H2  H 0 1 N N N -18.496 21.202 4.360  2.878  0.312  1.370  H2    DX 23 
DX H3    H3  H 0 1 N N N -17.091 20.248 3.774  3.759  1.541  0.433  H3    DX 24 
DX H4    H4  H 0 1 N N N -16.792 22.733 4.339  1.801  1.642  -1.165 H4    DX 25 
DX H5    H5  H 0 1 N N N -18.721 23.320 2.417  1.647  2.369  1.765  H5    DX 26 
DX H6    H6  H 0 1 N N N -17.749 24.924 3.875  1.280  4.483  0.715  H6    DX 27 
DX H7    H7  H 0 1 N N N -16.747 24.520 0.875  -0.647 2.106  1.844  H7    DX 28 
DX H8    H8  H 0 1 N N N -17.540 22.964 0.455  -0.818 3.160  0.405  H8    DX 29 
DX H9    H9  H 0 1 N N N -14.789 23.477 1.419  -0.831 1.342  -1.076 H9    DX 30 
DX H10   H10 H 0 1 N N N -14.210 18.698 -0.196 -3.072 -1.655 2.747  H10   DX 31 
DX H11   H11 H 0 1 N N N -14.380 20.305 1.789  -0.802 -0.444 2.416  H11   DX 32 
DX H13   H13 H 0 1 N N N -16.317 20.658 -4.292 -6.271 -1.028 -0.956 H13   DX 33 
DX H14   H14 H 0 1 N N N -20.936 19.130 3.955  6.177  0.376  -1.250 H14   DX 34 
DX OP3   O8  O 0 1 N Y N -20.411 19.666 0.934  5.003  -2.230 -1.406 OP3   DX 35 
DX H1    H1  H 0 1 N N N -21.076 20.224 0.548  5.809  -2.759 -1.328 H1    DX 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DX O2    C2    DOUB N N 1  
DX N1    C2    SING N N 2  
DX N1    C6    SING N N 3  
DX O6    C6    DOUB N N 4  
DX C2    N3    SING N N 5  
DX C6    N5    SING N N 6  
DX N3    C4    DOUB N N 7  
DX N5    C4    SING N N 8  
DX N5    C7    SING N N 9  
DX C4    N9    SING N N 10 
DX C7    C8    DOUB N N 11 
DX N9    C8    SING N N 12 
DX N9    "C1'" SING N N 13 
DX "C2'" "C1'" SING N N 14 
DX "C2'" "C3'" SING N N 15 
DX "C1'" "O4'" SING N N 16 
DX "O5'" P     SING N N 17 
DX "O5'" "C5'" SING N N 18 
DX P     OP1   DOUB N N 19 
DX P     OP2   SING N N 20 
DX "C3'" "O3'" SING N N 21 
DX "C3'" "C4'" SING N N 22 
DX "O4'" "C4'" SING N N 23 
DX "C4'" "C5'" SING N N 24 
DX "C5'" H2    SING N N 25 
DX "C5'" H3    SING N N 26 
DX "C4'" H4    SING N N 27 
DX "C3'" H5    SING N N 28 
DX "O3'" H6    SING N N 29 
DX "C2'" H7    SING N N 30 
DX "C2'" H8    SING N N 31 
DX "C1'" H9    SING N N 32 
DX C7    H10   SING N N 33 
DX C8    H11   SING N N 34 
DX N1    H13   SING N N 35 
DX OP2   H14   SING N N 36 
DX P     OP3   SING N N 37 
DX OP3   H1    SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DX InChI            InChI                1.03  "InChI=1S/C10H13N4O8P/c15-5-3-7(22-6(5)4-21-23(18,19)20)13-1-2-14-9(13)11-8(16)12-10(14)17/h1-2,5-7,15H,3-4H2,(H,12,16,17)(H2,18,19,20)/t5-,6+,7+/m0/s1" 
DX InChIKey         InChI                1.03  MIJXVMWIKXUKNK-RRKCRQDMSA-N                                                                                                                              
DX SMILES_CANONICAL CACTVS               3.385 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=CN3C(=O)NC(=O)N=C23"                                                                                           
DX SMILES           CACTVS               3.385 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=CN3C(=O)NC(=O)N=C23"                                                                                                
DX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "C1[C@@H]([C@H](O[C@H]1N2C=CN3C2=NC(=O)NC3=O)COP(=O)(O)O)O"                                                                                              
DX SMILES           "OpenEye OEToolkits" 2.0.5 "C1C(C(OC1N2C=CN3C2=NC(=O)NC3=O)COP(=O)(O)O)O"                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "[(2~{R},3~{S},5~{R})-5-[2,4-bis(oxidanylidene)imidazo[1,2-a][1,3,5]triazin-8-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DX "Create component" 2016-07-19 RCSB 
DX "Initial release"  2018-03-07 RCSB 
# 
