data_FDX
# 
_chem_comp.id                                    FDX 
_chem_comp.name                                  "(2R,4S)-2-(1,3-dihydroxypropan-2-yl)-4-{[(3R,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-3,4-dihydro-2H-pyrrole-5-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H25 N3 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-12-15 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        375.441 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     FDX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7T7D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
FDX C2  C1  C 0 1 N N S N N N 25.078 40.147 15.727 0.894  0.942  0.599  C2  FDX 1  
FDX C3  C2  C 0 1 N N N N N N 23.602 40.042 15.482 1.982  1.788  -0.024 C3  FDX 2  
FDX C1  C3  C 0 1 N N N N N N 25.618 39.458 14.466 1.581  -0.422 0.851  C1  FDX 3  
FDX C1A C4  C 0 1 N N R N N N 24.894 37.688 17.423 -1.748 -0.090 0.467  C1A FDX 4  
FDX C2A C5  C 0 1 N N N N N N 25.615 36.881 18.507 -2.350 0.878  1.507  C2A FDX 5  
FDX C31 C6  C 0 1 N N N N N N 22.544 40.753 16.198 1.931  3.266  -0.139 C31 FDX 6  
FDX C4A C7  C 0 1 N N N N N N 23.426 37.600 17.861 -2.976 -0.487 -0.394 C4A FDX 7  
FDX C5  C8  C 0 1 N N R N N N 24.439 38.727 13.783 2.724  -0.367 -0.190 C5  FDX 8  
FDX C5A C9  C 0 1 N N R N N N 23.282 36.299 18.664 -4.103 -0.527 0.669  C5A FDX 9  
FDX C6  C10 C 0 1 N N S N N N 24.201 39.114 12.304 3.990  -1.013 0.377  C6  FDX 10 
FDX C61 C11 C 0 1 N N N N N N 24.687 38.010 11.360 3.704  -2.475 0.728  C61 FDX 11 
FDX C6A C12 C 0 1 N N N N N N 22.449 36.526 19.907 -5.445 -0.313 0.018  C6A FDX 12 
FDX C7  C13 C 0 1 N N N N N N 22.740 39.471 11.946 5.106  -0.949 -0.668 C7  FDX 13 
FDX C8A C14 C 0 1 N N N N N N 20.674 35.570 21.289 -5.425 -2.654 -0.657 C8A FDX 14 
FDX C9A C15 C 0 1 N N N N N N 22.550 34.133 20.563 -7.366 -1.127 -1.241 C9A FDX 15 
FDX N3A N1  N 0 1 N N N N N N 24.659 35.843 18.984 -3.793 0.588  1.589  N3A FDX 16 
FDX N4  N2  N 0 1 N N N N N N 23.303 39.251 14.542 2.947  1.067  -0.437 N4  FDX 17 
FDX N7A N3  N 0 1 N N N N N N 21.931 35.462 20.547 -6.061 -1.335 -0.609 N7A FDX 18 
FDX O31 O1  O 0 1 N N N N N N 22.349 40.523 17.417 2.902  3.923  -0.803 O31 FDX 19 
FDX O32 O2  O 0 1 N N N N N N 21.854 41.571 15.547 1.015  3.883  0.364  O32 FDX 20 
FDX O62 O3  O 0 1 N N N N N N 24.033 38.071 10.075 4.849  -3.045 1.364  O62 FDX 21 
FDX O6A O4  O 0 1 N N N N N N 22.261 37.672 20.305 -5.971 0.779  0.058  O6A FDX 22 
FDX O7  O5  O 0 1 N N N N N N 22.660 40.904 11.962 4.699  -1.651 -1.844 O7  FDX 23 
FDX S21 S1  S 0 1 N N N N N N 25.547 39.345 17.253 -0.500 0.752  -0.546 S21 FDX 24 
FDX H1  H1  H 0 1 N N N N N N 25.407 41.195 15.778 0.559  1.382  1.539  H1  FDX 25 
FDX H2  H2  H 0 1 N N N N N N 26.398 38.733 14.741 1.976  -0.482 1.865  H2  FDX 26 
FDX H3  H3  H 0 1 N N N N N N 26.040 40.209 13.781 0.901  -1.248 0.647  H3  FDX 27 
FDX H4  H4  H 0 1 N N N N N N 25.020 37.195 16.448 -1.321 -0.965 0.957  H4  FDX 28 
FDX H5  H5  H 0 1 N N N N N N 26.513 36.404 18.088 -1.883 0.716  2.478  H5  FDX 29 
FDX H6  H6  H 0 1 N N N N N N 25.904 37.540 19.339 -2.197 1.909  1.186  H6  FDX 30 
FDX H7  H7  H 0 1 N N N N N N 23.166 38.464 18.490 -3.181 0.268  -1.153 H7  FDX 31 
FDX H8  H8  H 0 1 N N N N N N 22.768 37.576 16.980 -2.833 -1.467 -0.849 H8  FDX 32 
FDX H9  H9  H 0 1 N N N N N N 24.540 37.637 13.890 2.422  -0.868 -1.110 H9  FDX 33 
FDX H10 H10 H 0 1 N N N N N N 22.786 35.547 18.033 -4.086 -1.476 1.204  H10 FDX 34 
FDX H11 H11 H 0 1 N N N N N N 24.810 40.007 12.102 4.301  -0.478 1.274  H11 FDX 35 
FDX H12 H12 H 0 1 N N N N N N 24.478 37.033 11.819 2.850  -2.525 1.404  H12 FDX 36 
FDX H13 H13 H 0 1 N N N N N N 25.771 38.121 11.212 3.479  -3.030 -0.183 H13 FDX 37 
FDX H14 H14 H 0 1 N N N N N N 22.352 39.332 12.966 5.310  0.092  -0.918 H14 FDX 38 
FDX H16 H16 H 0 1 N N N N N N 20.426 34.596 21.735 -5.734 -3.238 0.209  H16 FDX 39 
FDX H17 H17 H 0 1 N N N N N N 20.782 36.321 22.085 -5.727 -3.169 -1.569 H17 FDX 40 
FDX H18 H18 H 0 1 N N N N N N 19.869 35.875 20.604 -4.342 -2.536 -0.648 H18 FDX 41 
FDX H19 H19 H 0 1 N N N N N N 21.928 33.445 21.155 -7.222 -0.818 -2.276 H19 FDX 42 
FDX H20 H20 H 0 1 N N N N N N 22.636 33.756 19.533 -7.935 -2.056 -1.214 H20 FDX 43 
FDX H21 H21 H 0 1 N N N N N N 23.551 34.200 21.013 -7.911 -0.351 -0.703 H21 FDX 44 
FDX H22 H22 H 0 1 N N N N N N 24.844 34.975 18.523 -4.063 0.362  2.535  H22 FDX 45 
FDX H24 H24 H 0 1 N N N N N N 21.625 41.054 17.728 2.826  4.886  -0.851 H24 FDX 46 
FDX H25 H25 H 0 1 N N N N N N 24.360 37.373 9.519  4.739  -3.972 1.615  H25 FDX 47 
FDX H26 H26 H 0 1 N N N N N N 21.775 41.175 11.747 4.501  -2.586 -1.696 H26 FDX 48 
FDX O1  O6  O 0 1 N Y N N N N 21.555 38.968 11.279 6.289  -1.552 -0.139 O1  FDX 49 
FDX H15 H15 H 0 1 N Y N N N N 21.583 38.019 11.255 7.040  -1.547 -0.748 H15 FDX 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
FDX O62 C61 SING N N 1  
FDX C61 C6  SING N N 2  
FDX C7  O7  SING N N 3  
FDX C7  C6  SING N N 4  
FDX C6  C5  SING N N 5  
FDX C5  C1  SING N N 6  
FDX C5  N4  SING N N 7  
FDX C1  C2  SING N N 8  
FDX N4  C3  DOUB N N 9  
FDX C3  C2  SING N N 10 
FDX C3  C31 SING N N 11 
FDX O32 C31 DOUB N N 12 
FDX C2  S21 SING N N 13 
FDX C31 O31 SING N N 14 
FDX S21 C1A SING N N 15 
FDX C1A C4A SING N N 16 
FDX C1A C2A SING N N 17 
FDX C4A C5A SING N N 18 
FDX C2A N3A SING N N 19 
FDX C5A N3A SING N N 20 
FDX C5A C6A SING N N 21 
FDX C6A O6A DOUB N N 22 
FDX C6A N7A SING N N 23 
FDX N7A C9A SING N N 24 
FDX N7A C8A SING N N 25 
FDX C2  H1  SING N N 26 
FDX C1  H2  SING N N 27 
FDX C1  H3  SING N N 28 
FDX C1A H4  SING N N 29 
FDX C2A H5  SING N N 30 
FDX C2A H6  SING N N 31 
FDX C4A H7  SING N N 32 
FDX C4A H8  SING N N 33 
FDX C5  H9  SING N N 34 
FDX C5A H10 SING N N 35 
FDX C6  H11 SING N N 36 
FDX C61 H12 SING N N 37 
FDX C61 H13 SING N N 38 
FDX C7  H14 SING N N 39 
FDX C8A H16 SING N N 40 
FDX C8A H17 SING N N 41 
FDX C8A H18 SING N N 42 
FDX C9A H19 SING N N 43 
FDX C9A H20 SING N N 44 
FDX C9A H21 SING N N 45 
FDX N3A H22 SING N N 46 
FDX O31 H24 SING N N 47 
FDX O62 H25 SING N N 48 
FDX O7  H26 SING N N 49 
FDX C7  O1  SING N N 50 
FDX O1  H15 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
FDX SMILES           ACDLabs              12.01 "CN(C)C(=O)C1CC(SC2CC(N=C2C(=O)O)C(CO)C(O)O)CN1"                                                                                                                    
FDX InChI            InChI                1.03  "InChI=1S/C15H25N3O6S/c1-18(2)13(20)10-3-7(5-16-10)25-11-4-9(8(6-19)14(21)22)17-12(11)15(23)24/h7-11,14,16,19,21-22H,3-6H2,1-2H3,(H,23,24)/t7-,8-,9-,10-,11+/m1/s1" 
FDX InChIKey         InChI                1.03  XKDKVNYTYXSQPL-ILAIQSSSSA-N                                                                                                                                         
FDX SMILES_CANONICAL CACTVS               3.385 "CN(C)C(=O)[C@H]1C[C@H](CN1)S[C@H]2C[C@@H](N=C2C(O)=O)[C@@H](CO)C(O)O"                                                                                              
FDX SMILES           CACTVS               3.385 "CN(C)C(=O)[CH]1C[CH](CN1)S[CH]2C[CH](N=C2C(O)=O)[CH](CO)C(O)O"                                                                                                     
FDX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)[C@H]1C[C@H](CN1)S[C@H]2C[C@@H](N=C2C(=O)O)[C@@H](CO)C(O)O"                                                                                              
FDX SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)C1CC(CN1)SC2CC(N=C2C(=O)O)C(CO)C(O)O"                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
FDX "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,4S)-4-{[(3R,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S)-1,1,3-trihydroxypropan-2-yl]-3,4-dihydro-2H-pyrrole-5-carboxylic acid"                     
FDX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},4~{S})-4-[(3~{R},5~{R})-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl-2-[(2~{S})-1,1,3-tris(oxidanyl)propan-2-yl]-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
FDX "Create component" 2021-12-15 RCSB 
FDX "Initial release"  2022-05-18 RCSB 
FDX "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            FDX 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C7 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
