data_MSX
#

_chem_comp.id                                   MSX
_chem_comp.name                                 "methyl 1,6-dithio-alpha-D-mannopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C7 H14 O4 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;1,6-DIDEOXY-DITHIO-METHYL-ALPHA-D-MANNOSE; methyl 1,6-dithio-alpha-D-mannoside; methyl 1,6-dithio-D-mannoside; methyl
1,6-dithio-mannoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-10-27
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       226.314
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    MSX
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4D4B
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  MSX  "1,6-DIDEOXY-DITHIO-METHYL-ALPHA-D-MANNOSE"  PDB  ?  
2  MSX  "methyl 1,6-dithio-alpha-D-mannoside"        PDB  ?  
3  MSX  "methyl 1,6-dithio-D-mannoside"              PDB  ?  
4  MSX  "methyl 1,6-dithio-mannoside"                PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MSX  O3    O3    O  0  1  N  N  N  -13.330  -24.917  -30.079  -0.839   1.529  -1.700  O3    MSX   1  
MSX  C3    C6    C  0  1  N  N  S  -12.553  -25.955  -30.689  -0.317   2.008  -0.459  C3    MSX   2  
MSX  C4    C     C  0  1  N  N  S  -11.686  -26.715  -29.687  -1.275   1.637   0.677  C4    MSX   3  
MSX  O4    O     O  0  1  N  N  N  -10.740  -25.819  -29.093  -0.786   2.173   1.908  O4    MSX   4  
MSX  C2    C5    C  0  1  N  N  S  -13.478  -26.949  -31.398   1.047   1.364  -0.194  C2    MSX   5  
MSX  O2    O2    O  0  1  N  N  N  -14.387  -27.543  -30.448   1.927   1.644  -1.284  O2    MSX   6  
MSX  C1    C3    C  0  1  N  N  R  -12.642  -28.022  -32.076   0.869  -0.150  -0.055  C1    MSX   7  
MSX  S1    S1    S  0  1  N  N  N  -11.719  -27.338  -33.431   2.468  -0.914   0.330  S1    MSX   8  
MSX  C4A   C4    C  0  1  N  N  N  -11.371  -28.804  -34.375   2.127  -2.687   0.153  C4A   MSX   9  
MSX  O5    O1    O  0  1  N  N  N  -11.828  -28.675  -31.097  -0.057  -0.426   0.998  O5    MSX  10  
MSX  C5    C1    C  0  1  N  N  S  -10.934  -27.856  -30.336  -1.363   0.112   0.782  C5    MSX  11  
MSX  C6    C2    C  0  1  N  N  N  -10.296  -28.769  -29.303  -1.940  -0.456  -0.516  C6    MSX  12  
MSX  S     S     S  0  1  N  N  N  -11.557  -29.772  -28.455  -2.228  -2.237  -0.322  S     MSX  13  
MSX  HO3   H3    H  0  1  N  Y  N  -13.849  -24.478  -30.743  -0.282   1.729  -2.465  HO3   MSX  14  
MSX  H3    H6    H  0  1  N  N  N  -11.888  -25.512  -31.446  -0.208   3.092  -0.504  H3    MSX  15  
MSX  H4    H     H  0  1  N  N  N  -12.342  -27.129  -28.907  -2.264   2.046   0.469  H4    MSX  16  
MSX  H2    H5    H  0  1  N  N  N  -14.048  -26.408  -32.168   1.467   1.768   0.727  H2    MSX  17  
MSX  HO4   HA    H  0  1  N  Y  N  -10.202  -26.293  -28.470  -0.700   3.136   1.911  HO4   MSX  18  
MSX  H5    H1    H  0  1  N  N  N  -10.147  -27.445  -30.986  -2.010  -0.158   1.617  H5    MSX  19  
MSX  HO2   H2    H  0  1  N  Y  N  -14.957  -28.158  -30.896   2.811   1.265  -1.182  HO2   MSX  20  
MSX  H1    HB    H  0  1  N  N  N  -13.326  -28.755  -32.528   0.487  -0.558  -0.991  H1    MSX  21  
MSX  H41C  H41C  H  0  0  N  N  N  -10.790  -28.535  -35.269   1.344  -2.978   0.854  H41C  MSX  22  
MSX  H42C  H42C  H  0  0  N  N  N  -10.792  -29.508  -33.759   1.798  -2.894  -0.865  H42C  MSX  23  
MSX  H43C  H43C  H  0  0  N  N  N  -12.316  -29.276  -34.681   3.033  -3.254   0.365  H43C  MSX  24  
MSX  H61   H21C  H  0  1  N  N  N   -9.582  -29.438  -29.806  -2.883   0.041  -0.743  H61   MSX  25  
MSX  H62   H22C  H  0  1  N  N  N   -9.764  -28.156  -28.560  -1.236  -0.289  -1.331  H62   MSX  26  
MSX  HS    HS    H  0  1  N  N  N  -10.836  -30.471  -27.630  -2.727  -2.595  -1.518  HS    MSX  27  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MSX  O3   C3    SING  N  N   1  
MSX  C3   C4    SING  N  N   2  
MSX  C3   C2    SING  N  N   3  
MSX  C4   O4    SING  N  N   4  
MSX  C4   C5    SING  N  N   5  
MSX  C2   O2    SING  N  N   6  
MSX  C2   C1    SING  N  N   7  
MSX  C1   S1    SING  N  N   8  
MSX  C1   O5    SING  N  N   9  
MSX  S1   C4A   SING  N  N  10  
MSX  O5   C5    SING  N  N  11  
MSX  C5   C6    SING  N  N  12  
MSX  C6   S     SING  N  N  13  
MSX  O3   HO3   SING  N  N  14  
MSX  C3   H3    SING  N  N  15  
MSX  C4   H4    SING  N  N  16  
MSX  C2   H2    SING  N  N  17  
MSX  O4   HO4   SING  N  N  18  
MSX  C5   H5    SING  N  N  19  
MSX  O2   HO2   SING  N  N  20  
MSX  C1   H1    SING  N  N  21  
MSX  C4A  H41C  SING  N  N  22  
MSX  C4A  H42C  SING  N  N  23  
MSX  C4A  H43C  SING  N  N  24  
MSX  C6   H61   SING  N  N  25  
MSX  C6   H62   SING  N  N  26  
MSX  S    HS    SING  N  N  27  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MSX  SMILES            ACDLabs               12.01  "OC1C(O)C(O)C(OC1SC)CS"  
MSX  InChI             InChI                 1.03   "InChI=1S/C7H14O4S2/c1-13-7-6(10)5(9)4(8)3(2-12)11-7/h3-10,12H,2H2,1H3/t3-,4-,5+,6+,7-/m1/s1"  
MSX  InChIKey          InChI                 1.03   VSIIBZKFQKUEEH-ULQPCXBYSA-N  
MSX  SMILES_CANONICAL  CACTVS                3.385  "CS[C@H]1O[C@H](CS)[C@@H](O)[C@H](O)[C@@H]1O"  
MSX  SMILES            CACTVS                3.385  "CS[CH]1O[CH](CS)[CH](O)[CH](O)[CH]1O"  
MSX  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CS[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CS)O)O)O"  
MSX  SMILES            "OpenEye OEToolkits"  1.7.6  "CSC1C(C(C(C(O1)CS)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MSX  "SYSTEMATIC NAME"  ACDLabs               12.01  "methyl 1,6-dithio-alpha-D-mannopyranoside"  
MSX  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2R,3S,4S,5S,6S)-2-methylsulfanyl-6-(sulfanylmethyl)oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
MSX  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
MSX  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
MSX  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
MSX  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MSX  "Create component"          2014-10-27  EBI   
MSX  "Initial release"           2015-03-25  RCSB  
MSX  "Other modification"        2020-07-03  RCSB  
MSX  "Modify name"               2020-07-17  RCSB  
MSX  "Modify synonyms"           2020-07-17  RCSB  
MSX  "Modify internal type"      2020-07-17  RCSB  
MSX  "Modify linking type"       2020-07-17  RCSB  
MSX  "Modify atom id"            2020-07-17  RCSB  
MSX  "Modify component atom id"  2020-07-17  RCSB  
MSX  "Modify leaving atom flag"  2020-07-17  RCSB  
##
