data_O2X
# 
_chem_comp.id                                    O2X 
_chem_comp.name                                  "~{N}-[[7-(2-chloranylethanoyl)-7-azaspiro[3.5]nonan-2-yl]methyl]-4-[(4-chlorophenyl)amino]oxane-4-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H31 Cl2 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-26 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        468.417 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     O2X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AUY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
O2X C1  C1  C  0 1 N N N N N N -22.255 -26.389 -2.932 6.021  -0.175 -0.207 C1  O2X 1  
O2X C2  C2  C  0 1 N N N N N N -21.851 -27.575 -3.791 6.691  0.400  -1.428 C2  O2X 2  
O2X C3  C3  C  0 1 N N N N N N -21.826 -24.044 -2.257 3.923  0.849  -0.936 C3  O2X 3  
O2X C4  C4  C  0 1 N N N N N N -20.666 -23.563 -1.406 3.262  2.005  -0.176 C4  O2X 4  
O2X C6  C5  C  0 1 N N N N N N -19.083 -24.740 -2.930 3.388  0.647  1.975  C6  O2X 5  
O2X C7  C6  C  0 1 N N N N N N -20.257 -25.169 -3.785 4.048  -0.501 1.202  C7  O2X 6  
O2X C8  C7  C  0 1 N N N N N N -19.392 -22.182 -3.164 1.623  2.486  1.732  C8  O2X 7  
O2X C9  C8  C  0 1 N N N N N N -18.495 -21.445 -2.152 0.499  2.078  0.765  C9  O2X 8  
O2X C11 C9  C  0 1 N N N N N N -15.599 -19.705 -1.234 -3.189 1.602  0.762  C11 O2X 9  
O2X C12 C10 C  0 1 N N N N N N -15.297 -18.679 -0.135 -4.219 1.209  -0.266 C12 O2X 10 
O2X C13 C11 C  0 1 Y N N N N N -17.148 -19.621 1.411  -3.124 -0.961 -0.755 C13 O2X 11 
O2X C14 C12 C  0 1 Y N N N N N -16.598 -20.884 1.695  -2.698 -1.922 -1.663 C14 O2X 12 
O2X O1  O1  O  0 1 N N N N N N -23.273 -26.454 -2.253 6.663  -0.836 0.582  O1  O2X 13 
O2X N1  N1  N  0 1 N N N N N N -21.483 -25.282 -2.978 4.710  0.050  0.012  N1  O2X 14 
O2X C5  C13 C  0 1 N N N N N N -19.395 -23.419 -2.235 2.500  1.445  1.023  C5  O2X 15 
O2X C10 C14 C  0 1 N N N N N N -17.325 -20.664 -2.707 -0.878 1.995  1.426  C10 O2X 16 
O2X N2  N2  N  0 1 N N N N N N -16.840 -19.696 -1.732 -1.894 1.718  0.408  N2  O2X 17 
O2X O2  O2  O  0 1 N N N N N N -14.732 -20.493 -1.611 -3.526 1.813  1.907  O2  O2X 18 
O2X N3  N3  N  0 1 N N N N N N -16.451 -18.560 0.781  -3.629 0.259  -1.213 N3  O2X 19 
O2X C15 C15 C  0 1 Y N N N N N -17.353 -21.854 2.332  -2.204 -3.129 -1.208 C15 O2X 20 
O2X C16 C16 C  0 1 Y N N N N N -18.653 -21.572 2.686  -2.134 -3.381 0.151  C16 O2X 21 
O2X CL2 CL1 CL 0 0 N N N N N N -19.603 -22.780 3.498  -1.513 -4.899 0.720  CL2 O2X 22 
O2X C17 C17 C  0 1 Y N N N N N -19.219 -20.345 2.429  -2.557 -2.425 1.058  C17 O2X 23 
O2X C18 C18 C  0 1 Y N N N N N -18.474 -19.369 1.798  -3.052 -1.216 0.608  C18 O2X 24 
O2X C19 C19 C  0 1 N N N N N N -15.049 -17.335 -0.846 -4.694 2.456  -1.018 C19 O2X 25 
O2X C20 C20 C  0 1 N N N N N N -14.476 -16.291 0.082  -5.795 2.059  -2.005 C20 O2X 26 
O2X O3  O3  O  0 1 N N N N N N -13.318 -16.770 0.760  -6.866 1.433  -1.295 O3  O2X 27 
O2X C21 C21 C  0 1 N N N N N N -13.596 -17.929 1.533  -6.491 0.236  -0.611 C21 O2X 28 
O2X C22 C22 C  0 1 N N N N N N -14.023 -19.064 0.641  -5.418 0.559  0.431  C22 O2X 29 
O2X C23 C23 C  0 1 N N N N N N -18.195 -22.798 -1.479 1.205  0.717  0.639  C23 O2X 30 
O2X CL1 CL2 CL 0 0 N Y N N N N -22.961 -27.975 -5.213 8.432  -0.065 -1.434 CL1 O2X 31 
O2X H1  H1  H  0 1 N N N N N N -20.849 -27.369 -4.196 6.207  0.012  -2.324 H1  O2X 32 
O2X H2  H2  H  0 1 N N N N N N -21.809 -28.461 -3.140 6.605  1.487  -1.411 H2  O2X 33 
O2X H3  H3  H  0 1 N N N N N N -22.082 -23.263 -2.988 3.154  0.224  -1.391 H3  O2X 34 
O2X H4  H4  H  0 1 N N N N N N -22.692 -24.236 -1.607 4.576  1.247  -1.712 H4  O2X 35 
O2X H5  H5  H  0 1 N N N N N N -20.922 -22.586 -0.970 4.028  2.699  0.170  H5  O2X 36 
O2X H6  H6  H  0 1 N N N N N N -20.488 -24.289 -0.599 2.570  2.527  -0.838 H6  O2X 37 
O2X H7  H7  H  0 1 N N N N N N -18.884 -25.512 -2.172 2.782  0.240  2.784  H7  O2X 38 
O2X H8  H8  H  0 1 N N N N N N -18.195 -24.615 -3.567 4.157  1.299  2.389  H8  O2X 39 
O2X H9  H9  H  0 1 N N N N N N -20.034 -26.146 -4.239 4.786  -0.992 1.837  H9  O2X 40 
O2X H10 H10 H  0 1 N N N N N N -20.416 -24.424 -4.578 3.289  -1.221 0.897  H10 O2X 41 
O2X H11 H11 H  0 1 N N N N N N -18.921 -22.354 -4.143 1.966  3.512  1.595  H11 O2X 42 
O2X H12 H12 H  0 1 N N N N N N -20.381 -21.723 -3.308 1.413  2.244  2.773  H12 O2X 43 
O2X H13 H13 H  0 1 N N N N N N -19.105 -20.814 -1.488 0.490  2.652  -0.162 H13 O2X 44 
O2X H14 H14 H  0 1 N N N N N N -15.578 -21.099 1.414  -2.753 -1.726 -2.723 H14 O2X 45 
O2X H15 H15 H  0 1 N N N N N N -16.512 -21.361 -2.958 -0.878 1.194  2.166  H15 O2X 46 
O2X H16 H16 H  0 1 N N N N N N -17.645 -20.132 -3.615 -1.104 2.942  1.916  H16 O2X 47 
O2X H17 H17 H  0 1 N N N N N N -17.470 -18.986 -1.418 -1.634 1.619  -0.522 H17 O2X 48 
O2X H18 H18 H  0 1 N N N N N N -16.128 -17.982 1.530  -3.589 0.477  -2.157 H18 O2X 49 
O2X H19 H19 H  0 1 N N N N N N -16.926 -22.822 2.549  -1.874 -3.877 -1.913 H19 O2X 50 
O2X H20 H20 H  0 1 N N N N N N -20.240 -20.146 2.719  -2.500 -2.624 2.118  H20 O2X 51 
O2X H21 H21 H  0 1 N N N N N N -18.915 -18.403 1.600  -3.382 -0.470 1.316  H21 O2X 52 
O2X H22 H22 H  0 1 N N N N N N -14.343 -17.498 -1.674 -5.087 3.183  -0.307 H22 O2X 53 
O2X H23 H23 H  0 1 N N N N N N -16.005 -16.966 -1.247 -3.857 2.894  -1.563 H23 O2X 54 
O2X H24 H24 H  0 1 N N N N N N -14.203 -15.402 -0.506 -6.167 2.949  -2.512 H24 O2X 55 
O2X H25 H25 H  0 1 N N N N N N -15.238 -16.018 0.827  -5.391 1.363  -2.740 H25 O2X 56 
O2X H26 H26 H  0 1 N N N N N N -14.403 -17.704 2.246  -7.364 -0.188 -0.115 H26 O2X 57 
O2X H27 H27 H  0 1 N N N N N N -12.691 -18.222 2.085  -6.096 -0.484 -1.328 H27 O2X 58 
O2X H28 H28 H  0 1 N N N N N N -14.227 -19.953 1.256  -5.099 -0.359 0.923  H28 O2X 59 
O2X H29 H29 H  0 1 N N N N N N -13.217 -19.289 -0.073 -5.825 1.248  1.172  H29 O2X 60 
O2X H30 H30 H  0 1 N N N N N N -18.305 -22.792 -0.384 0.879  -0.014 1.379  H30 O2X 61 
O2X H31 H31 H  0 1 N N N N N N -17.220 -23.230 -1.748 1.212  0.320  -0.376 H31 O2X 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
O2X C2  C1  SING N N 1  
O2X C7  N1  SING N N 2  
O2X C7  C6  SING N N 3  
O2X C8  C5  SING N N 4  
O2X C8  C9  SING N N 5  
O2X N1  C1  SING N N 6  
O2X N1  C3  SING N N 7  
O2X C1  O1  DOUB N N 8  
O2X C6  C5  SING N N 9  
O2X C10 C9  SING N N 10 
O2X C10 N2  SING N N 11 
O2X C3  C4  SING N N 12 
O2X C5  C23 SING N N 13 
O2X C5  C4  SING N N 14 
O2X C9  C23 SING N N 15 
O2X N2  C11 SING N N 16 
O2X O2  C11 DOUB N N 17 
O2X C11 C12 SING N N 18 
O2X C19 C12 SING N N 19 
O2X C19 C20 SING N N 20 
O2X C12 C22 SING N N 21 
O2X C12 N3  SING N N 22 
O2X C20 O3  SING N N 23 
O2X C22 C21 SING N N 24 
O2X O3  C21 SING N N 25 
O2X N3  C13 SING N N 26 
O2X C13 C14 DOUB Y N 27 
O2X C13 C18 SING Y N 28 
O2X C14 C15 SING Y N 29 
O2X C18 C17 DOUB Y N 30 
O2X C15 C16 DOUB Y N 31 
O2X C17 C16 SING Y N 32 
O2X C16 CL2 SING N N 33 
O2X C2  CL1 SING N N 34 
O2X C2  H1  SING N N 35 
O2X C2  H2  SING N N 36 
O2X C3  H3  SING N N 37 
O2X C3  H4  SING N N 38 
O2X C4  H5  SING N N 39 
O2X C4  H6  SING N N 40 
O2X C6  H7  SING N N 41 
O2X C6  H8  SING N N 42 
O2X C7  H9  SING N N 43 
O2X C7  H10 SING N N 44 
O2X C8  H11 SING N N 45 
O2X C8  H12 SING N N 46 
O2X C9  H13 SING N N 47 
O2X C14 H14 SING N N 48 
O2X C10 H15 SING N N 49 
O2X C10 H16 SING N N 50 
O2X N2  H17 SING N N 51 
O2X N3  H18 SING N N 52 
O2X C15 H19 SING N N 53 
O2X C17 H20 SING N N 54 
O2X C18 H21 SING N N 55 
O2X C19 H22 SING N N 56 
O2X C19 H23 SING N N 57 
O2X C20 H24 SING N N 58 
O2X C20 H25 SING N N 59 
O2X C21 H26 SING N N 60 
O2X C21 H27 SING N N 61 
O2X C22 H28 SING N N 62 
O2X C22 H29 SING N N 63 
O2X C23 H30 SING N N 64 
O2X C23 H31 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
O2X InChI            InChI                1.06    "InChI=1S/C23H31Cl2N3O3/c24-15-20(29)28-9-5-22(6-10-28)13-17(14-22)16-26-21(30)23(7-11-31-12-8-23)27-19-3-1-18(25)2-4-19/h1-4,17,27H,5-16H2,(H,26,30)" 
O2X InChIKey         InChI                1.06    KPSDEBOPURTRLW-UHFFFAOYSA-N                                                                                                                            
O2X SMILES_CANONICAL CACTVS               3.385   "ClCC(=O)N1CCC2(CC1)CC(CNC(=O)C3(CCOCC3)Nc4ccc(Cl)cc4)C2"                                                                                              
O2X SMILES           CACTVS               3.385   "ClCC(=O)N1CCC2(CC1)CC(CNC(=O)C3(CCOCC3)Nc4ccc(Cl)cc4)C2"                                                                                              
O2X SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(ccc1NC2(CCOCC2)C(=O)NCC3CC4(C3)CCN(CC4)C(=O)CCl)Cl"                                                                                              
O2X SMILES           "OpenEye OEToolkits" 3.1.0.0 "c1cc(ccc1NC2(CCOCC2)C(=O)NCC3CC4(C3)CCN(CC4)C(=O)CCl)Cl"                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           O2X 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "~{N}-[[7-(2-chloranylethanoyl)-7-azaspiro[3.5]nonan-2-yl]methyl]-4-[(4-chlorophenyl)amino]oxane-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
O2X "Create component" 2022-08-26 PDBE 
O2X "Initial release"  2023-09-20 RCSB 
O2X "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            O2X 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C2 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
