data_RZX
#

_chem_comp.id                                   RZX
_chem_comp.name                                 "2-[(R)-{[4-(3-methoxypropoxy)-3-methylpyridin-2-yl]methyl}sulfinyl]-1H-benzimidazole"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H21 N3 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Rabeprazole
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-11-09
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       359.443
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RZX
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3PGL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RZX  C1    C1    C  0  1  Y  N  N   3.451  11.372  -3.179    6.090   2.078   0.376  C1    RZX   1  
RZX  C2    C2    C  0  1  Y  N  N   3.165  11.725  -4.486    5.159   1.094   0.036  C2    RZX   2  
RZX  C3    C3    C  0  1  Y  N  N   3.877  12.874  -5.101    5.573  -0.246  -0.059  C3    RZX   3  
RZX  C4    C4    C  0  1  Y  N  N   4.820  13.561  -4.351    6.898  -0.578   0.186  C4    RZX   4  
RZX  C5    C5    C  0  1  Y  N  N   5.084  13.173  -3.041    7.799   0.410   0.521  C5    RZX   5  
RZX  C6    C6    C  0  1  Y  N  N   4.404  12.103  -2.475    7.390   1.733   0.614  C6    RZX   6  
RZX  N7    N7    N  0  1  Y  N  N   3.415  13.005  -6.362    4.449  -0.969  -0.405  N7    RZX   7  
RZX  C8    C8    C  0  1  Y  N  N   2.510  12.009  -6.499    3.417  -0.087  -0.510  C8    RZX   8  
RZX  N9    N9    N  0  1  Y  N  N   2.316  11.231  -5.417    3.832   1.119  -0.252  N9    RZX   9  
RZX  S10   S10   S  0  1  N  N  R   1.652  11.846  -7.961    1.762  -0.516  -0.932  S10   RZX  10  
RZX  C11   C11   C  0  1  N  N  N   0.720  10.440  -8.327    1.003  -0.853   0.680  C11   RZX  11  
RZX  C12   C12   C  0  1  Y  N  N   0.520   9.266  -7.391   -0.440  -1.241   0.486  C12   RZX  12  
RZX  N13   N13   N  0  1  Y  N  N   0.580   8.095  -8.041   -0.757  -2.510   0.316  N13   RZX  13  
RZX  C14   C14   C  0  1  Y  N  N   0.432   6.923  -7.413   -2.006  -2.900   0.142  C14   RZX  14  
RZX  C15   C15   C  0  1  Y  N  N   0.171   6.850  -6.049   -3.037  -1.984   0.130  C15   RZX  15  
RZX  C16   C16   C  0  1  Y  N  N   0.073   8.037  -5.330   -2.745  -0.633   0.306  C16   RZX  16  
RZX  C17   C17   C  0  1  Y  N  N   0.243   9.271  -5.999   -1.415  -0.264   0.492  C17   RZX  17  
RZX  O18   O18   O  0  1  N  N  N   0.601  12.933  -7.994    1.241   0.697  -1.457  O18   RZX  18  
RZX  O19   O19   O  0  1  N  N  N  -0.185   7.965  -3.969   -3.732   0.299   0.301  O19   RZX  19  
RZX  C20   C20   C  0  1  N  N  N  -1.422   7.443  -3.469   -5.067  -0.171   0.108  C20   RZX  20  
RZX  C21   C21   C  0  1  N  N  N  -2.426   8.589  -3.436   -6.034   1.014   0.132  C21   RZX  21  
RZX  C22   C22   C  0  1  N  N  N  -3.795   8.142  -2.957   -7.464   0.510  -0.074  C22   RZX  22  
RZX  O23   O23   O  0  1  N  N  N  -4.743   8.920  -3.698   -8.367   1.618  -0.051  O23   RZX  23  
RZX  C24   C24   C  0  1  N  N  N  -5.849   8.142  -4.163   -9.737   1.255  -0.236  C24   RZX  24  
RZX  C25   C25   C  0  1  N  N  N   0.134  10.544  -5.178   -1.045   1.183   0.693  C25   RZX  25  
RZX  H1    H1    H  0  1  N  N  N   2.942  10.542  -2.712    5.783   3.111   0.447  H1    RZX  26  
RZX  H4    H4    H  0  1  N  N  N   5.349  14.397  -4.784    7.221  -1.606   0.115  H4    RZX  27  
RZX  H5    H5    H  0  1  N  N  N   5.822  13.707  -2.461    8.831   0.153   0.712  H5    RZX  28  
RZX  H6    H6    H  0  1  N  N  N   4.622  11.828  -1.453    8.107   2.497   0.877  H6    RZX  29  
RZX  HN7   HN7   H  0  1  N  N  N   3.682  13.686  -7.043    4.402  -1.927  -0.548  HN7   RZX  30  
RZX  H11   H11   H  0  1  N  N  N  -0.295  10.821  -8.516    1.535  -1.669   1.169  H11   RZX  31  
RZX  H11A  H11A  H  0  0  N  N  N   1.205  10.008  -9.215    1.058   0.041   1.302  H11A  RZX  32  
RZX  H14   H14   H  0  1  N  N  N   0.518   6.008  -7.981   -2.223  -3.949   0.006  H14   RZX  33  
RZX  H15   H15   H  0  1  N  N  N   0.047   5.895  -5.560   -4.057  -2.309  -0.013  H15   RZX  34  
RZX  H20   H20   H  0  1  N  N  N  -1.787   6.640  -4.126   -5.139  -0.679  -0.854  H20   RZX  35  
RZX  H20A  H20A  H  0  0  N  N  N  -1.279   7.036  -2.457   -5.326  -0.868   0.906  H20A  RZX  36  
RZX  H21   H21   H  0  1  N  N  N  -2.051   9.363  -2.750   -5.963   1.522   1.094  H21   RZX  37  
RZX  H21A  H21A  H  0  0  N  N  N  -2.527   8.995  -4.453   -5.775   1.710  -0.666  H21A  RZX  38  
RZX  H22   H22   H  0  1  N  N  N  -3.941   7.068  -3.146   -7.536   0.003  -1.036  H22   RZX  39  
RZX  H22A  H22A  H  0  0  N  N  N  -3.906   8.320  -1.877   -7.723  -0.186   0.725  H22A  RZX  40  
RZX  H24   H24   H  0  1  N  N  N  -6.542   8.787  -4.723   -9.855   0.762  -1.201  H24   RZX  41  
RZX  H24A  H24A  H  0  0  N  N  N  -5.482   7.340  -4.821  -10.042   0.574   0.559  H24A  RZX  42  
RZX  H24B  H24B  H  0  0  N  N  N  -6.373   7.700  -3.303  -10.357   2.150  -0.206  H24B  RZX  43  
RZX  H25   H25   H  0  1  N  N  N  -0.910  10.891  -5.176   -0.849   1.645  -0.275  H25   RZX  44  
RZX  H25A  H25A  H  0  0  N  N  N   0.455  10.343  -4.145   -1.867   1.704   1.184  H25A  RZX  45  
RZX  H25B  H25B  H  0  0  N  N  N   0.778  11.320  -5.618   -0.152   1.247   1.314  H25B  RZX  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RZX  C1   C2    DOUB  Y  N   1  
RZX  C1   C6    SING  Y  N   2  
RZX  C2   C3    SING  Y  N   3  
RZX  C2   N9    SING  Y  N   4  
RZX  C3   C4    DOUB  Y  N   5  
RZX  C3   N7    SING  Y  N   6  
RZX  C4   C5    SING  Y  N   7  
RZX  C5   C6    DOUB  Y  N   8  
RZX  N7   C8    SING  Y  N   9  
RZX  C8   N9    DOUB  Y  N  10  
RZX  C8   S10   SING  N  N  11  
RZX  S10  C11   SING  N  N  12  
RZX  S10  O18   DOUB  N  N  13  
RZX  C11  C12   SING  N  N  14  
RZX  C12  N13   DOUB  Y  N  15  
RZX  C12  C17   SING  Y  N  16  
RZX  N13  C14   SING  Y  N  17  
RZX  C14  C15   DOUB  Y  N  18  
RZX  C15  C16   SING  Y  N  19  
RZX  C16  C17   DOUB  Y  N  20  
RZX  C16  O19   SING  N  N  21  
RZX  C17  C25   SING  N  N  22  
RZX  O19  C20   SING  N  N  23  
RZX  C20  C21   SING  N  N  24  
RZX  C21  C22   SING  N  N  25  
RZX  C22  O23   SING  N  N  26  
RZX  O23  C24   SING  N  N  27  
RZX  C1   H1    SING  N  N  28  
RZX  C4   H4    SING  N  N  29  
RZX  C5   H5    SING  N  N  30  
RZX  C6   H6    SING  N  N  31  
RZX  N7   HN7   SING  N  N  32  
RZX  C11  H11   SING  N  N  33  
RZX  C11  H11A  SING  N  N  34  
RZX  C14  H14   SING  N  N  35  
RZX  C15  H15   SING  N  N  36  
RZX  C20  H20   SING  N  N  37  
RZX  C20  H20A  SING  N  N  38  
RZX  C21  H21   SING  N  N  39  
RZX  C21  H21A  SING  N  N  40  
RZX  C22  H22   SING  N  N  41  
RZX  C22  H22A  SING  N  N  42  
RZX  C24  H24   SING  N  N  43  
RZX  C24  H24A  SING  N  N  44  
RZX  C24  H24B  SING  N  N  45  
RZX  C25  H25   SING  N  N  46  
RZX  C25  H25A  SING  N  N  47  
RZX  C25  H25B  SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RZX  SMILES            ACDLabs               12.01  "O=S(c2nc1ccccc1n2)Cc3nccc(OCCCOC)c3C"  
RZX  SMILES_CANONICAL  CACTVS                3.370  "COCCCOc1ccnc(C[S@@](=O)c2[nH]c3ccccc3n2)c1C"  
RZX  SMILES            CACTVS                3.370  "COCCCOc1ccnc(C[S](=O)c2[nH]c3ccccc3n2)c1C"  
RZX  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "Cc1c(ccnc1C[S@@](=O)c2[nH]c3ccccc3n2)OCCCOC"  
RZX  SMILES            "OpenEye OEToolkits"  1.7.0  "Cc1c(ccnc1CS(=O)c2[nH]c3ccccc3n2)OCCCOC"  
RZX  InChI             InChI                 1.03   "InChI=1S/C18H21N3O3S/c1-13-16(19-9-8-17(13)24-11-5-10-23-2)12-25(22)18-20-14-6-3-4-7-15(14)21-18/h3-4,6-9H,5,10-12H2,1-2H3,(H,20,21)/t25-/m1/s1"  
RZX  InChIKey          InChI                 1.03   YREYEVIYCVEVJK-RUZDIDTESA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RZX  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-[(R)-{[4-(3-methoxypropoxy)-3-methylpyridin-2-yl]methyl}sulfinyl]-1H-benzimidazole"  
RZX  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "2-[(R)-[4-(3-methoxypropoxy)-3-methyl-pyridin-2-yl]methylsulfinyl]-1H-benzimidazole"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RZX  "Create component"      2010-11-09  RCSB  
RZX  "Modify aromatic_flag"  2011-06-04  RCSB  
RZX  "Modify descriptor"     2011-06-04  RCSB  
RZX  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     RZX
_pdbx_chem_comp_synonyms.name        Rabeprazole
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
