data_WMX
# 
_chem_comp.id                                    WMX 
_chem_comp.name                                  "(4~{S},9~{S},10~{S})-17-(ethoxymethoxy)-4-methyl-9,10,19-tris(oxidanyl)-3-oxabicyclo[13.4.0]nonadeca-1(19),15,17-triene-2,8-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H32 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-09 
_chem_comp.pdbx_modified_date                    2025-04-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        424.485 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WMX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QR9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WMX C1   C1  C 0 1 N N N N N N -24.521 14.105 43.191 7.518  0.310  2.496  C1   WMX 1  
WMX C2   C2  C 0 1 N N N N N N -24.005 15.204 42.367 7.181  -0.621 1.330  C2   WMX 2  
WMX C4   C3  C 0 1 Y N N N N N -19.339 14.639 42.760 3.824  -0.845 -0.458 C4   WMX 3  
WMX C5   C4  C 0 1 Y N N N N N -19.592 13.316 42.429 3.739  0.519  -0.692 C5   WMX 4  
WMX C6   C5  C 0 1 Y N N N N N -18.566 12.551 41.904 2.506  1.153  -0.640 C6   WMX 5  
WMX O7   O1  O 0 1 N N N N N N -15.024 12.527 41.064 -0.154 2.326  -0.027 O7   WMX 6  
WMX O8   O2  O 0 1 N N N N N N -16.639 11.046 40.654 -0.923 0.376  -0.742 O8   WMX 7  
WMX C9   C6  C 0 1 N N N N N N -15.664 15.080 41.794 0.243  -1.767 0.280  C9   WMX 8  
WMX C10  C7  C 0 1 N N N N N N -15.627 16.600 41.920 -0.469 -2.287 -0.966 C10  WMX 9  
WMX C11  C8  C 0 1 N N N N N N -14.320 17.247 41.469 -1.829 -2.874 -0.585 C11  WMX 10 
WMX C12  C9  C 0 1 N N N N N N -13.075 16.593 42.036 -2.603 -1.895 0.296  C12  WMX 11 
WMX C13  C10 C 0 1 N N S N N N -12.984 16.485 43.577 -4.107 -2.070 0.079  C13  WMX 12 
WMX C14  C11 C 0 1 N N S N N N -11.946 15.458 44.056 -4.882 -1.167 1.035  C14  WMX 13 
WMX C15  C12 C 0 1 N N N N N N -12.505 14.086 43.704 -4.840 0.268  0.592  C15  WMX 14 
WMX C16  C13 C 0 1 N N N N N N -11.630 13.109 42.949 -4.671 1.367  1.611  C16  WMX 15 
WMX C17  C14 C 0 1 N N N N N N -12.273 11.992 42.146 -3.747 2.454  1.056  C17  WMX 16 
WMX C18  C15 C 0 1 N N N N N N -12.697 12.313 40.712 -2.471 1.803  0.520  C18  WMX 17 
WMX C19  C16 C 0 1 N N S N N N -14.048 11.775 40.261 -1.505 2.859  -0.012 C19  WMX 18 
WMX C20  C17 C 0 1 N N N N N N -14.323 12.008 38.789 -1.910 3.267  -1.430 C20  WMX 19 
WMX C21  C18 C 0 1 N N N N N N -16.294 12.107 41.109 0.027  1.046  -0.371 C21  WMX 20 
WMX C22  C19 C 0 1 Y N N N N N -18.071 15.175 42.564 2.679  -1.575 -0.154 C22  WMX 21 
WMX C3   C20 C 0 1 N N N N N N -21.728 14.871 42.984 6.161  -0.659 -0.839 C3   WMX 22 
WMX C7   C21 C 0 1 Y N N N N N -17.268 13.063 41.705 1.352  0.408  -0.370 C7   WMX 23 
WMX C8   C22 C 0 1 Y N N N N N -17.026 14.421 42.025 1.460  -0.962 -0.094 C8   WMX 24 
WMX O1   O3  O 0 1 N N N N N N -22.825 15.757 42.937 6.522  0.122  0.302  O1   WMX 25 
WMX O2   O4  O 0 1 N N N N N N -20.397 15.393 43.252 5.027  -1.468 -0.523 O2   WMX 26 
WMX O3   O5  O 0 1 N N N N N N -18.872 11.272 41.606 2.427  2.489  -0.858 O3   WMX 27 
WMX O4   O6  O 0 1 N N N N N N -12.722 17.783 44.136 -4.439 -1.766 -1.274 O4   WMX 28 
WMX O5   O7  O 0 1 N N N N N N -10.674 15.638 43.481 -6.245 -1.604 1.097  O5   WMX 29 
WMX O6   O8  O 0 1 N N N N N N -13.643 13.829 44.061 -4.956 0.559  -0.576 O6   WMX 30 
WMX H2   H1  H 0 1 N N N N N N -25.432 13.696 42.729 8.174  1.108  2.146  H2   WMX 31 
WMX H3   H2  H 0 1 N N N N N N -23.760 13.314 43.265 6.600  0.743  2.893  H3   WMX 32 
WMX H1   H3  H 0 1 N N N N N N -24.758 14.481 44.197 8.021  -0.256 3.280  H1   WMX 33 
WMX H5   H4  H 0 1 N N N N N N -23.774 14.822 41.362 8.099  -1.054 0.933  H5   WMX 34 
WMX H4   H5  H 0 1 N N N N N N -24.772 15.990 42.294 6.525  -1.418 1.679  H4   WMX 35 
WMX H8   H6  H 0 1 N N N N N N -20.573 12.890 42.579 4.629  1.087  -0.918 H8   WMX 36 
WMX H10  H7  H 0 1 N N N N N N -14.960 14.664 42.529 -0.435 -1.147 0.865  H10  WMX 37 
WMX H11  H8  H 0 1 N N N N N N -15.331 14.818 40.779 0.554  -2.617 0.895  H11  WMX 38 
WMX H13  H9  H 0 1 N N N N N N -16.443 17.014 41.309 -0.606 -1.480 -1.684 H13  WMX 39 
WMX H12  H10 H 0 1 N N N N N N -15.791 16.860 42.976 0.140  -3.070 -1.427 H12  WMX 40 
WMX H15  H11 H 0 1 N N N N N N -14.269 17.193 40.372 -2.398 -3.081 -1.491 H15  WMX 41 
WMX H14  H12 H 0 1 N N N N N N -14.330 18.301 41.784 -1.676 -3.807 -0.040 H14  WMX 42 
WMX H17  H13 H 0 1 N N N N N N -13.019 15.573 41.627 -2.368 -2.092 1.346  H17  WMX 43 
WMX H16  H14 H 0 1 N N N N N N -12.207 17.174 41.691 -2.321 -0.873 0.052  H16  WMX 44 
WMX H18  H15 H 0 1 N N N N N N -13.967 16.145 43.935 -4.372 -3.114 0.281  H18  WMX 45 
WMX H20  H16 H 0 1 N N N N N N -11.874 15.530 45.151 -4.445 -1.245 2.036  H20  WMX 46 
WMX H161 H17 H 0 0 N N N N N N -11.024 13.700 42.246 -5.646 1.804  1.833  H161 WMX 47 
WMX H22  H18 H 0 1 N N N N N N -10.971 12.632 43.690 -4.242 0.954  2.523  H22  WMX 48 
WMX H171 H19 H 0 0 N N N N N N -11.553 11.162 42.100 -4.255 2.984  0.250  H171 WMX 49 
WMX H23  H20 H 0 1 N N N N N N -13.172 11.668 42.692 -3.493 3.155  1.850  H23  WMX 50 
WMX H24  H21 H 0 1 N N N N N N -12.723 13.408 40.610 -1.991 1.241  1.324  H24  WMX 51 
WMX H25  H22 H 0 1 N N N N N N -11.932 11.900 40.038 -2.743 1.119  -0.286 H25  WMX 52 
WMX H26  H23 H 0 1 N N N N N N -14.113 10.700 40.486 -1.537 3.739  0.636  H26  WMX 53 
WMX H29  H24 H 0 1 N N N N N N -15.310 11.597 38.530 -2.919 3.678  -1.416 H29  WMX 54 
WMX H28  H25 H 0 1 N N N N N N -14.309 13.088 38.580 -1.216 4.021  -1.804 H28  WMX 55 
WMX H27  H26 H 0 1 N N N N N N -13.549 11.508 38.188 -1.882 2.394  -2.082 H27  WMX 56 
WMX H30  H27 H 0 1 N N N N N N -17.889 16.204 42.836 2.754  -2.636 0.032  H30  WMX 57 
WMX H6   H28 H 0 1 N N N N N N -21.946 14.133 43.770 5.915  0.004  -1.669 H6   WMX 58 
WMX H7   H29 H 0 1 N N N N N N -21.683 14.365 42.008 6.997  -1.298 -1.121 H7   WMX 59 
WMX H9   H30 H 0 1 N N N N N N -18.130 10.860 41.179 2.292  2.730  -1.785 H9   WMX 60 
WMX H19  H31 H 0 1 N N N N N N -12.666 17.716 45.082 -5.380 -1.858 -1.478 H19  WMX 61 
WMX H21  H32 H 0 1 N N N N N N -10.079 14.977 43.814 -6.801 -1.076 1.687  H21  WMX 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WMX C1  C2   SING N N 1  
WMX C2  O1   SING N N 2  
WMX O1  C3   SING N N 3  
WMX C3  O2   SING N N 4  
WMX O2  C4   SING N N 5  
WMX C4  C5   DOUB Y N 6  
WMX C4  C22  SING Y N 7  
WMX C5  C6   SING Y N 8  
WMX C6  O3   SING N N 9  
WMX C6  C7   DOUB Y N 10 
WMX C7  C8   SING Y N 11 
WMX C7  C21  SING N N 12 
WMX C8  C9   SING N N 13 
WMX C8  C22  DOUB Y N 14 
WMX C9  C10  SING N N 15 
WMX C10 C11  SING N N 16 
WMX C11 C12  SING N N 17 
WMX C12 C13  SING N N 18 
WMX C13 O4   SING N N 19 
WMX C13 C14  SING N N 20 
WMX C14 O5   SING N N 21 
WMX C14 C15  SING N N 22 
WMX C15 O6   DOUB N N 23 
WMX C15 C16  SING N N 24 
WMX C16 C17  SING N N 25 
WMX C17 C18  SING N N 26 
WMX C18 C19  SING N N 27 
WMX C19 C20  SING N N 28 
WMX C19 O7   SING N N 29 
WMX O7  C21  SING N N 30 
WMX C21 O8   DOUB N N 31 
WMX C1  H2   SING N N 32 
WMX C1  H3   SING N N 33 
WMX C1  H1   SING N N 34 
WMX C2  H5   SING N N 35 
WMX C2  H4   SING N N 36 
WMX C5  H8   SING N N 37 
WMX C9  H10  SING N N 38 
WMX C9  H11  SING N N 39 
WMX C10 H13  SING N N 40 
WMX C10 H12  SING N N 41 
WMX C11 H15  SING N N 42 
WMX C11 H14  SING N N 43 
WMX C12 H17  SING N N 44 
WMX C12 H16  SING N N 45 
WMX C13 H18  SING N N 46 
WMX C14 H20  SING N N 47 
WMX C16 H161 SING N N 48 
WMX C16 H22  SING N N 49 
WMX C17 H171 SING N N 50 
WMX C17 H23  SING N N 51 
WMX C18 H24  SING N N 52 
WMX C18 H25  SING N N 53 
WMX C19 H26  SING N N 54 
WMX C20 H29  SING N N 55 
WMX C20 H28  SING N N 56 
WMX C20 H27  SING N N 57 
WMX C22 H30  SING N N 58 
WMX C3  H6   SING N N 59 
WMX C3  H7   SING N N 60 
WMX O3  H9   SING N N 61 
WMX O4  H19  SING N N 62 
WMX O5  H21  SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WMX InChI            InChI                1.06  "InChI=1S/C22H32O8/c1-3-28-13-29-16-11-15-8-4-5-9-17(23)21(26)18(24)10-6-7-14(2)30-22(27)20(15)19(25)12-16/h11-12,14,17,21,23,25-26H,3-10,13H2,1-2H3/t14-,17?,21?/m0/s1" 
WMX InChIKey         InChI                1.06  KDOYDBOXSWPABK-UAXOWTEWSA-N                                                                                                                                              
WMX SMILES_CANONICAL CACTVS               3.385 "CCOCOc1cc(O)c2C(=O)O[C@@H](C)CCCC(=O)[C@@H](O)[C@@H](O)CCCCc2c1"                                                                                                        
WMX SMILES           CACTVS               3.385 "CCOCOc1cc(O)c2C(=O)O[CH](C)CCCC(=O)[CH](O)[CH](O)CCCCc2c1"                                                                                                              
WMX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOCOc1cc2c(c(c1)O)C(=O)O[C@H](CCCC(=O)[C@H]([C@H](CCCC2)O)O)C"                                                                                                         
WMX SMILES           "OpenEye OEToolkits" 2.0.7 "CCOCOc1cc2c(c(c1)O)C(=O)OC(CCCC(=O)C(C(CCCC2)O)O)C"                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           WMX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(4~{S},9~{S},10~{S})-17-(ethoxymethoxy)-4-methyl-9,10,19-tris(oxidanyl)-3-oxabicyclo[13.4.0]nonadeca-1(19),15,17-triene-2,8-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WMX "Create component" 2023-10-09 PDBE 
WMX "Modify PCM"       2024-09-27 PDBE 
WMX "Initial release"  2025-04-16 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            WMX 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C17 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
