data_YMX
# 
_chem_comp.id                                    YMX 
_chem_comp.name                                  Entrectinib 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H34 F2 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-08-01 
_chem_comp.pdbx_modified_date                    2016-08-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        560.637 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YMX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5FTO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YMX C1   C1   C 0 1 Y N N 4.653  14.077 10.244 5.122  -3.189 -0.651 C1   YMX 1  
YMX C2   C2   C 0 1 Y N N 3.716  14.980 9.998  3.747  -3.079 -0.460 C2   YMX 2  
YMX N3   N3   N 0 1 Y N N 2.500  15.065 10.380 2.773  -3.954 -0.054 N3   YMX 3  
YMX N4   N4   N 0 1 Y N N 1.941  16.126 9.886  1.539  -3.296 -0.042 N4   YMX 4  
YMX C5   C5   C 0 1 Y N N 2.787  16.720 9.133  1.691  -2.054 -0.419 C5   YMX 5  
YMX N6   N6   N 0 1 N N N 2.403  17.864 8.561  0.678  -1.095 -0.528 N6   YMX 6  
YMX C7   C7   C 0 1 N N N 2.856  18.340 7.405  -0.595 -1.422 -0.229 C7   YMX 7  
YMX O8   O8   O 0 1 N N N 3.518  17.698 6.639  -0.863 -2.552 0.135  O8   YMX 8  
YMX C9   C9   C 0 1 Y N N 2.406  19.636 7.063  -1.659 -0.414 -0.344 C9   YMX 9  
YMX C10  C10  C 0 1 Y N N 1.185  20.076 7.474  -1.339 0.915  -0.642 C10  YMX 10 
YMX C11  C11  C 0 1 Y N N 0.672  21.293 7.200  -2.327 1.850  -0.748 C11  YMX 11 
YMX C12  C12  C 0 1 Y N N 1.389  22.182 6.451  -3.661 1.492  -0.561 C12  YMX 12 
YMX N13  N13  N 0 1 N N N 0.851  23.333 6.170  -4.659 2.455  -0.671 N13  YMX 13 
YMX C14  C14  C 0 1 N N N 1.594  24.101 5.214  -4.088 3.771  -0.989 C14  YMX 14 
YMX C15  C15  C 0 1 N N N 0.876  25.360 4.849  -5.220 4.782  -1.180 C15  YMX 15 
YMX N16  N16  N 0 1 N N N 0.642  26.137 6.019  -6.030 4.845  0.044  N16  YMX 16 
YMX C17  C17  C 0 1 N N N -0.170 27.274 5.790  -7.084 5.861  -0.072 C17  YMX 17 
YMX C18  C18  C 0 1 N N N -0.146 25.295 6.837  -6.601 3.528  0.362  C18  YMX 18 
YMX C19  C19  C 0 1 N N N 0.702  24.186 7.292  -5.469 2.517  0.553  C19  YMX 19 
YMX C20  C20  C 0 1 Y N N 2.596  21.800 5.972  -3.997 0.178  -0.264 C20  YMX 20 
YMX C21  C21  C 0 1 Y N N 3.101  20.561 6.280  -3.004 -0.782 -0.159 C21  YMX 21 
YMX N22  N22  N 0 1 N N N 4.267  20.214 5.820  -3.333 -2.100 0.133  N22  YMX 22 
YMX C23  C23  C 0 1 N N N 5.158  21.113 5.177  -4.739 -2.505 0.206  C23  YMX 23 
YMX C24  C24  C 0 1 N N N 6.346  21.177 5.983  -4.857 -4.004 -0.084 C24  YMX 24 
YMX C25  C25  C 0 1 N N N 7.318  22.038 5.298  -6.318 -4.433 0.071  C25  YMX 25 
YMX O26  O26  O 0 1 N N N 7.825  21.371 4.286  -6.769 -4.115 1.389  O26  YMX 26 
YMX C27  C27  C 0 1 N N N 6.779  21.268 3.380  -6.727 -2.721 1.700  C27  YMX 27 
YMX C28  C28  C 0 1 N N N 5.582  20.506 3.940  -5.282 -2.223 1.610  C28  YMX 28 
YMX C29  C29  C 0 1 Y N N 3.935  16.020 9.214  3.111  -1.848 -0.707 C29  YMX 29 
YMX C30  C30  C 0 1 Y N N 5.127  16.165 8.672  3.865  -0.754 -1.141 C30  YMX 30 
YMX C31  C31  C 0 1 Y N N 6.157  15.282 8.897  5.212  -0.890 -1.320 C31  YMX 31 
YMX C32  C32  C 0 1 N N N 7.413  15.474 8.356  6.026  0.289  -1.787 C32  YMX 32 
YMX C33  C33  C 0 1 Y N N 8.022  16.618 8.900  6.516  1.066  -0.592 C33  YMX 33 
YMX C34  C34  C 0 1 Y N N 8.168  17.768 8.148  7.731  0.750  -0.014 C34  YMX 34 
YMX C35  C35  C 0 1 Y N N 8.769  18.890 8.700  8.182  1.463  1.084  C35  YMX 35 
YMX F36  F36  F 0 1 N N N 8.861  19.755 8.105  9.370  1.154  1.649  F36  YMX 36 
YMX C37  C37  C 0 1 Y N N 9.229  18.862 10.011 7.416  2.493  1.602  C37  YMX 37 
YMX C38  C38  C 0 1 Y N N 9.108  17.732 10.795 6.199  2.808  1.022  C38  YMX 38 
YMX F39  F39  F 0 1 N N N 9.448  17.691 11.766 5.451  3.813  1.527  F39  YMX 39 
YMX C40  C40  C 0 1 Y N N 8.494  16.651 10.214 5.752  2.097  -0.079 C40  YMX 40 
YMX C41  C41  C 0 1 Y N N 5.912  14.203 9.715  5.838  -2.105 -1.075 C41  YMX 41 
YMX H1   H1   H 0 1 N N N 4.422  13.228 10.871 5.622  -4.127 -0.461 H1   YMX 42 
YMX H10  H10  H 0 1 N N N 0.582  19.401 8.063  -0.308 1.201  -0.789 H10  YMX 43 
YMX H11  H11  H 0 1 N N N -0.305 21.564 7.573  -2.074 2.875  -0.979 H11  YMX 44 
YMX H14  H14  H 0 1 N N N 2.572  24.359 5.645  -3.445 4.095  -0.171 H14  YMX 45 
YMX H14A H14A H 0 0 N N N 1.741  23.497 4.306  -3.503 3.702  -1.906 H14A YMX 46 
YMX H15  H15  H 0 1 N N N 1.489  25.939 4.143  -4.799 5.766  -1.388 H15  YMX 47 
YMX H15A H15A H 0 0 N N N -0.086 25.109 4.379  -5.848 4.472  -2.016 H15A YMX 48 
YMX H17  H17  H 0 1 N N N -0.307 27.823 6.733  -7.736 5.614  -0.910 H17  YMX 49 
YMX H17A H17A H 0 0 N N N 0.316  27.929 5.052  -7.669 5.886  0.847  H17A YMX 50 
YMX H17B H17B H 0 0 N N N -1.150 26.953 5.407  -6.630 6.838  -0.241 H17B YMX 51 
YMX H18  H18  H 0 1 N N N -0.520 25.860 7.704  -7.186 3.597  1.279  H18  YMX 52 
YMX H18A H18A H 0 0 N N N -0.997 24.903 6.260  -7.244 3.204  -0.456 H18A YMX 53 
YMX H19  H19  H 0 1 N N N 0.219  23.649 8.121  -5.891 1.533  0.761  H19  YMX 54 
YMX H19A H19A H 0 0 N N N 1.682  24.562 7.621  -4.841 2.827  1.389  H19A YMX 55 
YMX H20  H20  H 0 1 N N N 3.164  22.472 5.345  -5.032 -0.096 -0.119 H20  YMX 56 
YMX HN22 HN22 H 0 0 N N N 4.770  19.844 6.602  -2.632 -2.752 0.289  HN22 YMX 57 
YMX H23  H23  H 0 1 N N N 4.711  22.105 5.018  -5.318 -1.945 -0.529 H23  YMX 58 
YMX H24  H24  H 0 1 N N N 6.105  21.599 6.970  -4.524 -4.205 -1.103 H24  YMX 59 
YMX H24A H24A H 0 0 N N N 6.766  20.168 6.109  -4.237 -4.561 0.619  H24A YMX 60 
YMX H25  H25  H 0 1 N N N 6.816  22.945 4.930  -6.931 -3.906 -0.660 H25  YMX 61 
YMX H25A H25A H 0 0 N N N 8.120  22.320 5.996  -6.400 -5.508 -0.093 H25A YMX 62 
YMX H27  H27  H 0 1 N N N 6.452  22.282 3.104  -7.345 -2.172 0.990  H27  YMX 63 
YMX H27A H27A H 0 0 N N N 7.141  20.743 2.484  -7.104 -2.562 2.710  H27A YMX 64 
YMX H28  H28  H 0 1 N N N 5.868  19.460 4.125  -4.670 -2.744 2.348  H28  YMX 65 
YMX H28A H28A H 0 0 N N N 4.756  20.538 3.215  -5.253 -1.151 1.804  H28A YMX 66 
YMX H30  H30  H 0 1 N N N 5.302  17.012 8.025  3.385  0.194  -1.333 H30  YMX 67 
YMX H32  H32  H 0 1 N N N 8.038  14.595 8.574  6.879  -0.065 -2.365 H32  YMX 68 
YMX H32A H32A H 0 0 N N N 7.321  15.598 7.267  5.407  0.934  -2.411 H32A YMX 69 
YMX H34  H34  H 0 1 N N N 7.813  17.793 7.128  8.328  -0.054 -0.419 H34  YMX 70 
YMX H37  H37  H 0 1 N N N 9.692  19.745 10.426 7.767  3.049  2.459  H37  YMX 71 
YMX H40  H40  H 0 1 N N N 8.367  15.763 10.815 4.805  2.346  -0.534 H40  YMX 72 
YMX H41  H41  H 0 1 N N N 6.684  13.480 9.933  6.905  -2.195 -1.222 H41  YMX 73 
YMX H6   H6   H 0 1 N N N 1.717  18.409 9.043  0.892  -0.195 -0.818 H6   YMX 74 
YMX H3   H3   H 0 1 N N N 2.043  14.405 10.977 2.917  -4.883 0.186  H3   YMX 75 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YMX C1  C2   DOUB Y N 1  
YMX C1  C41  SING Y N 2  
YMX C2  N3   SING Y N 3  
YMX C2  C29  SING Y N 4  
YMX N3  N4   SING Y N 5  
YMX N4  C5   DOUB Y N 6  
YMX C5  N6   SING N N 7  
YMX C5  C29  SING Y N 8  
YMX N6  C7   SING N N 9  
YMX C7  O8   DOUB N N 10 
YMX C7  C9   SING N N 11 
YMX C9  C10  DOUB Y N 12 
YMX C9  C21  SING Y N 13 
YMX C10 C11  SING Y N 14 
YMX C11 C12  DOUB Y N 15 
YMX C12 N13  SING N N 16 
YMX C12 C20  SING Y N 17 
YMX N13 C14  SING N N 18 
YMX N13 C19  SING N N 19 
YMX C14 C15  SING N N 20 
YMX C15 N16  SING N N 21 
YMX N16 C17  SING N N 22 
YMX N16 C18  SING N N 23 
YMX C18 C19  SING N N 24 
YMX C20 C21  DOUB Y N 25 
YMX C21 N22  SING N N 26 
YMX N22 C23  SING N N 27 
YMX C23 C24  SING N N 28 
YMX C23 C28  SING N N 29 
YMX C24 C25  SING N N 30 
YMX C25 O26  SING N N 31 
YMX O26 C27  SING N N 32 
YMX C27 C28  SING N N 33 
YMX C29 C30  DOUB Y N 34 
YMX C30 C31  SING Y N 35 
YMX C31 C32  SING N N 36 
YMX C31 C41  DOUB Y N 37 
YMX C32 C33  SING N N 38 
YMX C33 C34  DOUB Y N 39 
YMX C33 C40  SING Y N 40 
YMX C34 C35  SING Y N 41 
YMX C35 F36  SING N N 42 
YMX C35 C37  DOUB Y N 43 
YMX C37 C38  SING Y N 44 
YMX C38 F39  SING N N 45 
YMX C38 C40  DOUB Y N 46 
YMX C1  H1   SING N N 47 
YMX C10 H10  SING N N 48 
YMX C11 H11  SING N N 49 
YMX C14 H14  SING N N 50 
YMX C14 H14A SING N N 51 
YMX C15 H15  SING N N 52 
YMX C15 H15A SING N N 53 
YMX C17 H17  SING N N 54 
YMX C17 H17A SING N N 55 
YMX C17 H17B SING N N 56 
YMX C18 H18  SING N N 57 
YMX C18 H18A SING N N 58 
YMX C19 H19  SING N N 59 
YMX C19 H19A SING N N 60 
YMX C20 H20  SING N N 61 
YMX N22 HN22 SING N N 62 
YMX C23 H23  SING N N 63 
YMX C24 H24  SING N N 64 
YMX C24 H24A SING N N 65 
YMX C25 H25  SING N N 66 
YMX C25 H25A SING N N 67 
YMX C27 H27  SING N N 68 
YMX C27 H27A SING N N 69 
YMX C28 H28  SING N N 70 
YMX C28 H28A SING N N 71 
YMX C30 H30  SING N N 72 
YMX C32 H32  SING N N 73 
YMX C32 H32A SING N N 74 
YMX C34 H34  SING N N 75 
YMX C37 H37  SING N N 76 
YMX C40 H40  SING N N 77 
YMX C41 H41  SING N N 78 
YMX N6  H6   SING N N 79 
YMX N3  H3   SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YMX SMILES           ACDLabs              12.01 "c6c4N=N\C(=N\C(=O)c2ccc(N1CCN(C)CC1)cc2NC3CCOCC3)c4cc(Cc5cc(F)cc(F)c5)c6"                                                                                                                                 
YMX InChI            InChI                1.03  "InChI=1S/C31H34F2N6O2/c1-38-8-10-39(11-9-38)25-3-4-26(29(19-25)34-24-6-12-41-13-7-24)31(40)35-30-27-17-20(2-5-28(27)36-37-30)14-21-15-22(32)18-23(33)16-21/h2-5,15-19,24,34H,6-14H2,1H3,(H2,35,36,37,40)" 
YMX InChIKey         InChI                1.03  HAYYBYPASCDWEQ-UHFFFAOYSA-N                                                                                                                                                                                
YMX SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)c2ccc(C(=O)Nc3n[nH]c4ccc(Cc5cc(F)cc(F)c5)cc34)c(NC6CCOCC6)c2"                                                                                                                                  
YMX SMILES           CACTVS               3.385 "CN1CCN(CC1)c2ccc(C(=O)Nc3n[nH]c4ccc(Cc5cc(F)cc(F)c5)cc34)c(NC6CCOCC6)c2"                                                                                                                                  
YMX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CN1CCN(CC1)c2ccc(c(c2)NC3CCOCC3)C(=O)Nc4c5cc(ccc5[nH]n4)Cc6cc(cc(c6)F)F"                                                                                                                                  
YMX SMILES           "OpenEye OEToolkits" 1.7.6 "CN1CCN(CC1)c2ccc(c(c2)NC3CCOCC3)C(=O)Nc4c5cc(ccc5[nH]n4)Cc6cc(cc(c6)F)F"                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YMX "SYSTEMATIC NAME" ACDLabs              12.01 "N-{5-[(3,5-difluorophenyl)methyl]-3H-indazol-3-ylidene}-4-(4-methylpiperazin-1-yl)-2-[(oxan-4-yl)amino]benzamide" 
YMX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[5-[[3,5-bis(fluoranyl)phenyl]methyl]-1H-indazol-3-yl]-4-(4-methylpiperazin-1-yl)-2-(oxan-4-ylamino)benzamide"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YMX "Create component"   2016-01-14 EBI  
YMX "Initial release"    2016-04-06 RCSB 
YMX "Other modification" 2016-08-01 EBI  
# 
