data_GDY
#

_chem_comp.id                                   GDY
_chem_comp.name                                 "(5Z)-5-({4-[2-(thiophen-2-yl)ethoxy]phenyl}methylidene)-1,3-thiazolidine-2,4-dione"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H13 N O3 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-05-18
_chem_comp.pdbx_modified_date                   2019-05-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       331.409
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GDY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6DGR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GDY  C10  C1   C  0  1  Y  N  N  18.650  61.569  13.079  -0.379   1.135  -0.837  C10  GDY   1  
GDY  C13  C2   C  0  1  Y  N  N  16.673  61.955  14.972  -0.468  -1.486   0.090  C13  GDY   2  
GDY  C15  C3   C  0  1  N  N  N  18.281  61.644  16.924  -2.950  -1.476  -0.056  C15  GDY   3  
GDY  C17  C4   C  0  1  N  N  N  18.821  63.038  19.137  -5.471  -1.218   0.085  C17  GDY   4  
GDY  C20  C5   C  0  1  N  N  N  20.519  64.539  18.799  -6.000   1.004   0.339  C20  GDY   5  
GDY  C01  C6   C  0  1  Y  N  N  18.228  66.995   8.518   7.419  -1.032  -0.527  C01  GDY   6  
GDY  C02  C7   C  0  1  Y  N  N  18.194  65.587   8.817   6.320  -0.396  -1.079  C02  GDY   7  
GDY  C03  C8   C  0  1  Y  N  N  16.987  65.161   9.401   5.637   0.379  -0.235  C03  GDY   8  
GDY  C05  C9   C  0  1  Y  N  N  17.065  67.714   8.834   7.628  -0.774   0.765  C05  GDY   9  
GDY  C06  C10  C  0  1  N  N  N  16.583  63.741   9.850   4.406   1.174  -0.589  C06  GDY  10  
GDY  C07  C11  C  0  1  N  N  N  17.655  62.827  10.463   3.160   0.319  -0.349  C07  GDY  11  
GDY  C09  C12  C  0  1  Y  N  N  17.350  61.812  12.647   0.795   0.457  -0.528  C09  GDY  12  
GDY  C11  C13  C  0  1  Y  N  N  18.969  61.517  14.445  -1.597   0.515  -0.680  C11  GDY  13  
GDY  C12  C14  C  0  1  Y  N  N  17.983  61.736  15.406  -1.653  -0.805  -0.214  C12  GDY  14  
GDY  C14  C15  C  0  1  Y  N  N  16.362  62.002  13.609   0.745  -0.851  -0.060  C14  GDY  15  
GDY  C16  C16  C  0  1  N  N  N  19.013  62.726  17.755  -4.084  -0.741   0.069  C16  GDY  16  
GDY  N19  N1   N  0  1  N  N  N  19.638  64.003  19.649  -6.385  -0.272   0.222  N19  GDY  17  
GDY  O08  O1   O  0  1  N  N  N  17.015  61.859  11.272   1.994   1.074  -0.685  O08  GDY  18  
GDY  O18  O2   O  0  1  N  N  N  17.876  62.438  19.984  -5.760  -2.395  -0.025  O18  GDY  19  
GDY  O21  O3   O  0  1  N  N  N  21.436  65.551  19.099  -6.726   1.971   0.470  O21  GDY  20  
GDY  S04  S1   S  0  1  Y  N  N  16.018  66.559   9.491   6.390   0.329   1.353  S04  GDY  21  
GDY  S22  S2   S  0  1  N  N  N  20.284  63.778  17.304  -4.230   1.018   0.253  S22  GDY  22  
GDY  H1   H1   H  0  1  N  N  N  19.430  61.417  12.348  -0.335   2.153  -1.196  H1   GDY  23  
GDY  H2   H2   H  0  1  N  N  N  15.888  62.090  15.701  -0.505  -2.503   0.449  H2   GDY  24  
GDY  H3   H3   H  0  1  N  N  N  17.952  60.756  17.443  -3.001  -2.555  -0.040  H3   GDY  25  
GDY  H5   H5   H  0  1  N  N  N  19.094  67.468   8.078   8.057  -1.691  -1.098  H5   GDY  26  
GDY  H6   H6   H  0  1  N  N  N  19.018  64.920   8.612   6.038  -0.518  -2.114  H6   GDY  27  
GDY  H7   H7   H  0  1  N  N  N  16.880  68.768   8.690   8.433  -1.179   1.359  H7   GDY  28  
GDY  H8   H8   H  0  1  N  N  N  15.786  63.853  10.600   4.360   2.067   0.034  H8   GDY  29  
GDY  H9   H9   H  0  1  N  N  N  16.184  63.223   8.965   4.451   1.465  -1.638  H9   GDY  30  
GDY  H10  H10  H  0  1  N  N  N  18.217  62.326   9.661   3.207  -0.574  -0.973  H10  GDY  31  
GDY  H11  H11  H  0  1  N  N  N  18.345  63.425  11.077   3.115   0.028   0.700  H11  GDY  32  
GDY  H12  H12  H  0  1  N  N  N  19.983  61.306  14.753  -2.509   1.044  -0.915  H12  GDY  33  
GDY  H13  H13  H  0  1  N  N  N  15.344  62.188  13.300   1.660  -1.374   0.177  H13  GDY  34  
GDY  H14  H14  H  0  1  N  N  N  19.581  64.292  20.605  -7.327  -0.501   0.238  H14  GDY  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GDY  C01  C02  SING  Y  N   1  
GDY  C01  C05  DOUB  Y  N   2  
GDY  C02  C03  DOUB  Y  N   3  
GDY  C05  S04  SING  Y  N   4  
GDY  C03  S04  SING  Y  N   5  
GDY  C03  C06  SING  N  N   6  
GDY  C06  C07  SING  N  N   7  
GDY  C07  O08  SING  N  N   8  
GDY  O08  C09  SING  N  N   9  
GDY  C09  C10  DOUB  Y  N  10  
GDY  C09  C14  SING  Y  N  11  
GDY  C10  C11  SING  Y  N  12  
GDY  C14  C13  DOUB  Y  N  13  
GDY  C11  C12  DOUB  Y  N  14  
GDY  C13  C12  SING  Y  N  15  
GDY  C12  C15  SING  N  N  16  
GDY  C15  C16  DOUB  N  Z  17  
GDY  S22  C16  SING  N  N  18  
GDY  S22  C20  SING  N  N  19  
GDY  C16  C17  SING  N  N  20  
GDY  C20  O21  DOUB  N  N  21  
GDY  C20  N19  SING  N  N  22  
GDY  C17  N19  SING  N  N  23  
GDY  C17  O18  DOUB  N  N  24  
GDY  C10  H1   SING  N  N  25  
GDY  C13  H2   SING  N  N  26  
GDY  C15  H3   SING  N  N  27  
GDY  C01  H5   SING  N  N  28  
GDY  C02  H6   SING  N  N  29  
GDY  C05  H7   SING  N  N  30  
GDY  C06  H8   SING  N  N  31  
GDY  C06  H9   SING  N  N  32  
GDY  C07  H10  SING  N  N  33  
GDY  C07  H11  SING  N  N  34  
GDY  C11  H12  SING  N  N  35  
GDY  C14  H13  SING  N  N  36  
GDY  N19  H14  SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GDY  SMILES            ACDLabs               12.01  "c1cc(ccc1OCCc2cccs2)[C@H]=C3C(NC(=O)S3)=O"  
GDY  InChI             InChI                 1.03   "InChI=1S/C16H13NO3S2/c18-15-14(22-16(19)17-15)10-11-3-5-12(6-4-11)20-8-7-13-2-1-9-21-13/h1-6,9-10H,7-8H2,(H,17,18,19)"  
GDY  InChIKey          InChI                 1.03   NTKWOUHXDKSPIX-UHFFFAOYSA-N  
GDY  SMILES_CANONICAL  CACTVS                3.385  "O=C1NC(=O)/C(S1)=C/c2ccc(OCCc3sccc3)cc2"  
GDY  SMILES            CACTVS                3.385  "O=C1NC(=O)C(S1)=Cc2ccc(OCCc3sccc3)cc2"  
GDY  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1cc(sc1)CCOc2ccc(cc2)C=C3C(=O)NC(=O)S3"  
GDY  SMILES            "OpenEye OEToolkits"  2.0.6  "c1cc(sc1)CCOc2ccc(cc2)C=C3C(=O)NC(=O)S3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GDY  "SYSTEMATIC NAME"  ACDLabs               12.01  "(5Z)-5-({4-[2-(thiophen-2-yl)ethoxy]phenyl}methylidene)-1,3-thiazolidine-2,4-dione"  
GDY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "5-[[4-(2-thiophen-2-ylethoxy)phenyl]methylidene]-1,3-thiazolidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GDY  "Create component"  2018-05-18  RCSB  
GDY  "Initial release"   2019-05-22  RCSB  
##
