data_LLY
# 
_chem_comp.id                                    LLY 
_chem_comp.name                                  "NZ-(DICARBOXYMETHYL)LYSINE" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C9 H16 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        248.233 
_chem_comp.one_letter_code                       K 
_chem_comp.three_letter_code                     LLY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1UCW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LLY N   N   N 0 1 N N N N N N 29.341 -0.283 21.228 0.289  -2.023 -2.679 N   LLY 1  
LLY CA  CA  C 0 1 N N S N N N 29.924 0.694  22.135 0.069  -0.599 -2.676 CA  LLY 2  
LLY CB  CB  C 0 1 N N N N N N 29.389 2.069  21.743 1.082  0.147  -1.805 CB  LLY 3  
LLY CG  CG  C 0 1 N N N N N N 30.384 3.195  21.744 1.029  -0.210 -0.314 CG  LLY 4  
LLY CD  CD  C 0 1 N N N N N N 29.931 4.375  20.866 2.018  0.595  0.536  CD  LLY 5  
LLY CE  CE  C 0 1 N N N N N N 30.663 5.607  21.345 2.002  0.192  2.012  CE  LLY 6  
LLY NZ  NZ  N 0 1 N N N N N N 30.744 6.726  20.411 2.977  0.944  2.792  NZ  LLY 7  
LLY CH  CH  C 0 1 N N N N N N 31.720 7.748  20.768 2.936  0.551  4.194  CH  LLY 8  
LLY C1  C1  C 0 1 N N N N N N 33.026 7.595  19.954 1.539  0.828  4.706  C1  LLY 9  
LLY O1  O1  O 0 1 N N N N N N 33.357 6.220  19.799 0.982  1.916  4.726  O1  LLY 10 
LLY O2  O2  O 0 1 N N N N N N ?      ?      ?      0.971  -0.303 5.202  O2  LLY 11 
LLY C2  C2  C 0 1 N N N N N N 31.171 9.187  20.621 4.046  1.309  4.891  C2  LLY 12 
LLY O3  O3  O 0 1 N N N N N N 29.776 9.211  20.378 3.896  2.104  5.809  O3  LLY 13 
LLY O4  O4  O 0 1 N N N N N N ?      ?      ?      5.268  1.015  4.371  O4  LLY 14 
LLY C   C   C 0 1 N N N N N N 29.613 0.379  23.603 0.184  -0.144 -4.118 C   LLY 15 
LLY O   O   O 0 1 N N N N N N 28.447 0.244  23.971 0.958  -0.607 -4.946 O   LLY 16 
LLY OXT OXT O 0 1 N Y N N N N 30.655 0.217  24.425 -0.649 0.895  -4.389 OXT LLY 17 
LLY H   1HN H 0 1 N N N N N N 29.698 -1.201 21.489 -0.424 -2.627 -3.053 H   LLY 18 
LLY H2  2HN H 0 1 N Y N N N N 29.504 -0.059 20.246 1.044  -2.402 -2.131 H2  LLY 19 
LLY HA  HA  H 0 1 N N N N N N 31.035 0.666  22.045 -0.960 -0.449 -2.337 HA  LLY 20 
LLY HB2 1HB H 0 1 N N N N N N 28.889 2.009  20.748 2.097  -0.060 -2.169 HB2 LLY 21 
LLY HB3 2HB H 0 1 N N N N N N 28.520 2.333  22.390 0.936  1.229  -1.918 HB3 LLY 22 
LLY HG2 1HG H 0 1 N N N N N N 30.611 3.530  22.782 1.260  -1.278 -0.214 HG2 LLY 23 
LLY HG3 2HG H 0 1 N N N N N N 31.397 2.837  21.446 0.008  -0.075 0.061  HG3 LLY 24 
LLY HD2 1HD H 0 1 N N N N N N 30.069 4.183  19.776 1.804  1.666  0.452  HD2 LLY 25 
LLY HD3 2HD H 0 1 N N N N N N 28.823 4.505  20.851 3.033  0.443  0.148  HD3 LLY 26 
LLY HE2 1HE H 0 1 N N N N N N 30.220 5.954  22.307 1.003  0.351  2.433  HE2 LLY 27 
LLY HE3 2HE H 0 1 N N N N N N 31.688 5.325  21.681 2.226  -0.877 2.096  HE3 LLY 28 
LLY HZ  HNZ H 0 1 N N N N N N 29.823 7.145  20.281 3.910  0.767  2.421  HZ  LLY 29 
LLY HH  HH  H 0 1 N N N N N N 31.944 7.585  21.848 3.120  -0.523 4.322  HH  LLY 30 
LLY HO2 HO2 H 0 1 N N N N N N 0.802  -0.094 -0.500 0.077  -0.132 5.568  HO2 LLY 31 
LLY HO4 HO4 H 0 1 N N N N N N -0.337 0.883  -0.090 6.021  1.488  4.787  HO4 LLY 32 
LLY HXT HXT H 0 1 N Y N N N N 30.462 0.021  25.334 -0.589 1.253  -5.301 HXT LLY 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LLY N   CA  SING N N 1  
LLY N   H   SING N N 2  
LLY N   H2  SING N N 3  
LLY CA  CB  SING N N 4  
LLY CA  C   SING N N 5  
LLY CA  HA  SING N N 6  
LLY CB  CG  SING N N 7  
LLY CB  HB2 SING N N 8  
LLY CB  HB3 SING N N 9  
LLY CG  CD  SING N N 10 
LLY CG  HG2 SING N N 11 
LLY CG  HG3 SING N N 12 
LLY CD  CE  SING N N 13 
LLY CD  HD2 SING N N 14 
LLY CD  HD3 SING N N 15 
LLY CE  NZ  SING N N 16 
LLY CE  HE2 SING N N 17 
LLY CE  HE3 SING N N 18 
LLY NZ  CH  SING N N 19 
LLY NZ  HZ  SING N N 20 
LLY CH  C1  SING N N 21 
LLY CH  C2  SING N N 22 
LLY CH  HH  SING N N 23 
LLY C1  O1  DOUB N N 24 
LLY C1  O2  SING N N 25 
LLY O2  HO2 SING N N 26 
LLY C2  O3  DOUB N N 27 
LLY C2  O4  SING N N 28 
LLY O4  HO4 SING N N 29 
LLY C   O   DOUB N N 30 
LLY C   OXT SING N N 31 
LLY OXT HXT SING N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LLY SMILES           ACDLabs              10.04 "O=C(O)C(C(=O)O)NCCCCC(N)C(=O)O"                                                                                        
LLY SMILES_CANONICAL CACTVS               3.341 "N[C@@H](CCCCNC(C(O)=O)C(O)=O)C(O)=O"                                                                                   
LLY SMILES           CACTVS               3.341 "N[CH](CCCCNC(C(O)=O)C(O)=O)C(O)=O"                                                                                     
LLY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CCNC(C(=O)O)C(=O)O)C[C@@H](C(=O)O)N"                                                                                 
LLY SMILES           "OpenEye OEToolkits" 1.5.0 "C(CCNC(C(=O)O)C(=O)O)CC(C(=O)O)N"                                                                                      
LLY InChI            InChI                1.03  "InChI=1S/C9H16N2O6/c10-5(7(12)13)3-1-2-4-11-6(8(14)15)9(16)17/h5-6,11H,1-4,10H2,(H,12,13)(H,14,15)(H,16,17)/t5-/m0/s1" 
LLY InChIKey         InChI                1.03  XINFXVVRMYBFMI-YFKPBYRVSA-N                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LLY "SYSTEMATIC NAME" ACDLabs              10.04 "{[(5S)-5-amino-5-carboxypentyl]amino}propanedioic acid"         
LLY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[[(5S)-5-amino-6-hydroxy-6-oxo-hexyl]amino]propanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LLY "Create component"  1999-07-08 RCSB 
LLY "Modify descriptor" 2011-06-04 RCSB 
LLY "Modify PCM"        2024-09-27 PDBE 
# 
