data_LPY
#

_chem_comp.id                                   LPY
_chem_comp.name                                 "(2R)-2-hydroxy-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl tridecanoate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H43 O12 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        sn-1-tridecanoyl-phosphatidylinositol
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-01-22
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       530.543
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ?
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4XPJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LPY  P    P1   P  0  1  N  N  N  -10.342   3.130  22.361   -4.700   0.411  -0.880  P    LPY   1  
LPY  O1   O1   O  0  1  N  N  N  -11.433  -1.628  26.286   -9.593  -2.920   0.377  O1   LPY   2  
LPY  O2   O2   O  0  1  N  N  N  -10.917  -0.922  23.579   -6.907  -2.437  -0.351  O2   LPY   3  
LPY  O3   O3   O  0  1  N  N  N  -10.158   1.787  23.206   -5.835   0.113   0.222  O3   LPY   4  
LPY  O4   O4   O  0  1  N  N  N  -10.174   4.319  23.268   -4.966   1.852  -1.548  O4   LPY   5  
LPY  O5   O5   O  0  1  N  N  N  -11.719   3.154  21.752   -4.741  -0.634  -1.927  O5   LPY   6  
LPY  O7   O6   O  0  1  N  N  N   -6.813   2.195  15.634    2.947   0.464  -1.539  O7   LPY   7  
LPY  O8   O7   O  0  1  N  N  N  -10.460   2.680  18.340   -0.900   1.632   0.931  O8   LPY   8  
LPY  O9   O8   O  0  1  N  N  N   -8.838   1.698  16.614    1.578   0.349   0.192  O9   LPY   9  
LPY  O10  O9   O  0  1  N  N  N   -9.237   3.186  21.192   -3.253   0.407  -0.174  O10  LPY  10  
LPY  O11  O10  O  0  1  N  N  N  -10.067   2.634  25.781   -7.871   0.869   2.029  O11  LPY  11  
LPY  O12  O11  O  0  1  N  N  N  -12.290   2.942  27.316  -10.295   1.827   0.941  O12  LPY  12  
LPY  O13  O12  O  0  1  N  N  N  -13.060   0.235  27.698  -11.368  -0.722   0.368  O13  LPY  13  
LPY  C15  C1   C  0  1  N  N  R   -9.153   2.638  18.840   -0.850   0.494   0.068  C15  LPY  14  
LPY  C16  C2   C  0  1  N  N  N   -9.170   2.092  20.256   -2.031   0.538  -0.903  C16  LPY  15  
LPY  C17  C3   C  0  1  N  N  N  -12.010   0.631  26.813   -9.987  -0.558   0.697  C17  LPY  16  
LPY  C20  C4   C  0  1  N  N  R  -12.326   2.004  26.260   -9.522   0.834   0.264  C20  LPY  17  
LPY  C26  C5   C  0  1  N  N  S  -11.873  -0.409  25.714   -9.159  -1.620  -0.027  C26  LPY  18  
LPY  C29  C6   C  0  1  N  N  N  -12.165   1.737   1.731   17.755  -0.499  -0.100  C29  LPY  19  
LPY  C30  C7   C  0  1  N  N  N  -11.272   0.725   2.464   16.487  -0.524   0.757  C30  LPY  20  
LPY  C31  C8   C  0  1  N  N  N  -11.270   1.038   3.974   15.260  -0.359  -0.143  C31  LPY  21  
LPY  C32  C9   C  0  1  N  N  N  -10.550  -0.100   4.734   13.993  -0.384   0.713  C32  LPY  22  
LPY  C33  C10  C  0  1  N  N  N  -10.910  -0.027   6.243   12.766  -0.219  -0.186  C33  LPY  23  
LPY  C34  C11  C  0  1  N  N  N   -9.606  -0.097   7.091   11.499  -0.244   0.670  C34  LPY  24  
LPY  C35  C12  C  0  1  N  N  N   -9.794   0.715   8.393   10.272  -0.078  -0.229  C35  LPY  25  
LPY  C36  C13  C  0  1  N  N  N   -8.802   0.212   9.464    9.005  -0.103   0.627  C36  LPY  26  
LPY  C37  C14  C  0  1  N  N  N   -8.875   1.138  10.720    7.778   0.062  -0.272  C37  LPY  27  
LPY  C38  C15  C  0  1  N  N  N   -8.225   0.423  11.922    6.510   0.037   0.584  C38  LPY  28  
LPY  C39  C16  C  0  1  N  N  N   -8.125   1.400  13.114    5.284   0.203  -0.315  C39  LPY  29  
LPY  C40  C17  C  0  1  N  N  N   -8.098   0.611  14.413    4.016   0.178   0.541  C40  LPY  30  
LPY  C41  C18  C  0  1  N  N  R  -10.882   0.020  24.641   -7.681  -1.444   0.326  C41  LPY  31  
LPY  C42  C19  C  0  1  N  N  N   -7.849   1.557  15.578    2.808   0.340  -0.345  C42  LPY  32  
LPY  C43  C20  C  0  1  N  N  N  -11.200   1.393  24.088   -7.216  -0.052  -0.108  C43  LPY  33  
LPY  C44  C21  C  0  1  N  N  R  -11.333   2.431  25.184   -8.043   1.011   0.617  C44  LPY  34  
LPY  C45  C22  C  0  1  N  N  N   -8.289   1.726  17.946    0.461   0.510  -0.721  C45  LPY  35  
LPY  H1   H1   H  0  1  N  N  N  -12.046  -1.903  26.957  -10.523  -3.102   0.184  H1   LPY  36  
LPY  H2   H2   H  0  1  N  N  N  -10.719  -1.788  23.916   -7.148  -3.345  -0.124  H2   LPY  37  
LPY  H3   H3   H  0  1  N  N  N  -10.972   4.835  23.266   -4.953   2.586  -0.919  H3   LPY  38  
LPY  H4   H4   H  0  1  N  N  N  -10.992   3.242  18.891   -0.856   2.480   0.467  H4   LPY  39  
LPY  H5   H5   H  0  1  N  N  N  -10.142   3.284  26.470   -8.368   1.512   2.553  H5   LPY  40  
LPY  H6   H6   H  0  1  N  N  N  -12.906   2.683  27.991  -11.244   1.775   0.763  H6   LPY  41  
LPY  H7   H7   H  0  1  N  N  N  -13.153   0.880  28.389  -11.731  -1.584   0.614  H7   LPY  42  
LPY  H8   H8   H  0  1  N  N  N   -8.709   3.644  18.850   -0.904  -0.416   0.665  H8   LPY  43  
LPY  H9   H9   H  0  1  N  N  N  -10.048   1.442  20.388   -1.944  -0.280  -1.618  H9   LPY  44  
LPY  H10  H10  H  0  1  N  N  N   -8.253   1.511  20.436   -2.027   1.489  -1.437  H10  LPY  45  
LPY  H11  H11  H  0  1  N  N  N  -11.060   0.685  27.364   -9.855  -0.666   1.774  H11  LPY  46  
LPY  H12  H12  H  0  1  N  N  N  -13.331   1.979  25.815   -9.654   0.943  -0.812  H12  LPY  47  
LPY  H13  H13  H  0  1  N  N  N  -12.857  -0.550  25.243   -9.291  -1.512  -1.104  H13  LPY  48  
LPY  H14  H14  H  0  1  N  N  N  -12.166   1.513   0.654   17.817   0.452  -0.628  H14  LPY  49  
LPY  H15  H15  H  0  1  N  N  N  -13.192   1.669   2.120   18.628  -0.617   0.541  H15  LPY  50  
LPY  H16  H16  H  0  1  N  N  N  -11.777   2.753   1.894   17.721  -1.315  -0.822  H16  LPY  51  
LPY  H17  H17  H  0  1  N  N  N  -11.660  -0.291   2.301   16.424  -1.476   1.285  H17  LPY  52  
LPY  H18  H18  H  0  1  N  N  N  -10.246   0.793   2.074   16.520   0.291   1.479  H18  LPY  53  
LPY  H19  H19  H  0  1  N  N  N  -10.744   1.988   4.151   15.323   0.592  -0.672  H19  LPY  54  
LPY  H20  H20  H  0  1  N  N  N  -12.307   1.120   4.333   15.227  -1.175  -0.865  H20  LPY  55  
LPY  H21  H21  H  0  1  N  N  N  -10.870  -1.071   4.328   13.930  -1.335   1.242  H21  LPY  56  
LPY  H22  H22  H  0  1  N  N  N   -9.462   0.009   4.611   14.026   0.431   1.436  H22  LPY  57  
LPY  H23  H23  H  0  1  N  N  N  -11.432   0.919   6.450   12.829   0.733  -0.715  H23  LPY  58  
LPY  H24  H24  H  0  1  N  N  N  -11.564  -0.872   6.505   12.733  -1.034  -0.909  H24  LPY  59  
LPY  H25  H25  H  0  1  N  N  N   -9.387  -1.146   7.341   11.436  -1.195   1.199  H25  LPY  60  
LPY  H26  H26  H  0  1  N  N  N   -8.770   0.324   6.514   11.532   0.572   1.393  H26  LPY  61  
LPY  H27  H27  H  0  1  N  N  N   -9.606   1.780   8.191   10.335   0.873  -0.758  H27  LPY  62  
LPY  H28  H28  H  0  1  N  N  N  -10.824   0.587   8.759   10.239  -0.894  -0.952  H28  LPY  63  
LPY  H29  H29  H  0  1  N  N  N   -9.064  -0.817   9.752    8.942  -1.054   1.156  H29  LPY  64  
LPY  H30  H30  H  0  1  N  N  N   -7.781   0.230   9.055    9.038   0.712   1.349  H30  LPY  65  
LPY  H31  H31  H  0  1  N  N  N   -8.337   2.076  10.516    7.841   1.013  -0.801  H31  LPY  66  
LPY  H32  H32  H  0  1  N  N  N   -9.927   1.361  10.951    7.745  -0.753  -0.995  H32  LPY  67  
LPY  H33  H33  H  0  1  N  N  N   -8.840  -0.443  12.209    6.448  -0.914   1.113  H33  LPY  68  
LPY  H34  H34  H  0  1  N  N  N   -7.217   0.081  11.643    6.544   0.853   1.306  H34  LPY  69  
LPY  H35  H35  H  0  1  N  N  N   -7.203   1.993  13.026    5.346   1.154  -0.844  H35  LPY  70  
LPY  H36  H36  H  0  1  N  N  N   -8.995   2.073  13.111    5.250  -0.613  -1.038  H36  LPY  71  
LPY  H37  H37  H  0  1  N  N  N   -9.064   0.103  14.553    3.954  -0.774   1.069  H37  LPY  72  
LPY  H38  H38  H  0  1  N  N  N   -7.293  -0.137  14.370    4.050   0.993   1.263  H38  LPY  73  
LPY  H39  H39  H  0  1  N  N  N   -9.876   0.045  25.085   -7.549  -1.552   1.402  H39  LPY  74  
LPY  H40  H40  H  0  1  N  N  N  -12.152   1.338  23.540   -7.347   0.056  -1.184  H40  LPY  75  
LPY  H41  H41  H  0  1  N  N  N  -11.690   3.370  24.735   -7.712   2.002   0.309  H41  LPY  76  
LPY  H42  H42  H  0  1  N  N  N   -8.281   0.707  18.361    0.556   1.459  -1.248  H42  LPY  77  
LPY  H43  H43  H  0  1  N  N  N   -7.261   2.115  17.911    0.460  -0.308  -1.442  H43  LPY  78  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LPY  C29  C30  SING  N  N   1  
LPY  C30  C31  SING  N  N   2  
LPY  C31  C32  SING  N  N   3  
LPY  C32  C33  SING  N  N   4  
LPY  C33  C34  SING  N  N   5  
LPY  C34  C35  SING  N  N   6  
LPY  C35  C36  SING  N  N   7  
LPY  C36  C37  SING  N  N   8  
LPY  C37  C38  SING  N  N   9  
LPY  C38  C39  SING  N  N  10  
LPY  C39  C40  SING  N  N  11  
LPY  C40  C42  SING  N  N  12  
LPY  C42  O7   DOUB  N  N  13  
LPY  C42  O9   SING  N  N  14  
LPY  O9   C45  SING  N  N  15  
LPY  C45  C15  SING  N  N  16  
LPY  O8   C15  SING  N  N  17  
LPY  C15  C16  SING  N  N  18  
LPY  C16  O10  SING  N  N  19  
LPY  O10  P    SING  N  N  20  
LPY  O5   P    DOUB  N  N  21  
LPY  P    O3   SING  N  N  22  
LPY  P    O4   SING  N  N  23  
LPY  O3   C43  SING  N  N  24  
LPY  O2   C41  SING  N  N  25  
LPY  C43  C41  SING  N  N  26  
LPY  C43  C44  SING  N  N  27  
LPY  C41  C26  SING  N  N  28  
LPY  C44  O11  SING  N  N  29  
LPY  C44  C20  SING  N  N  30  
LPY  C26  O1   SING  N  N  31  
LPY  C26  C17  SING  N  N  32  
LPY  C20  C17  SING  N  N  33  
LPY  C20  O12  SING  N  N  34  
LPY  C17  O13  SING  N  N  35  
LPY  O1   H1   SING  N  N  36  
LPY  O2   H2   SING  N  N  37  
LPY  O4   H3   SING  N  N  38  
LPY  O8   H4   SING  N  N  39  
LPY  O11  H5   SING  N  N  40  
LPY  O12  H6   SING  N  N  41  
LPY  O13  H7   SING  N  N  42  
LPY  C15  H8   SING  N  N  43  
LPY  C16  H9   SING  N  N  44  
LPY  C16  H10  SING  N  N  45  
LPY  C17  H11  SING  N  N  46  
LPY  C20  H12  SING  N  N  47  
LPY  C26  H13  SING  N  N  48  
LPY  C29  H14  SING  N  N  49  
LPY  C29  H15  SING  N  N  50  
LPY  C29  H16  SING  N  N  51  
LPY  C30  H17  SING  N  N  52  
LPY  C30  H18  SING  N  N  53  
LPY  C31  H19  SING  N  N  54  
LPY  C31  H20  SING  N  N  55  
LPY  C32  H21  SING  N  N  56  
LPY  C32  H22  SING  N  N  57  
LPY  C33  H23  SING  N  N  58  
LPY  C33  H24  SING  N  N  59  
LPY  C34  H25  SING  N  N  60  
LPY  C34  H26  SING  N  N  61  
LPY  C35  H27  SING  N  N  62  
LPY  C35  H28  SING  N  N  63  
LPY  C36  H29  SING  N  N  64  
LPY  C36  H30  SING  N  N  65  
LPY  C37  H31  SING  N  N  66  
LPY  C37  H32  SING  N  N  67  
LPY  C38  H33  SING  N  N  68  
LPY  C38  H34  SING  N  N  69  
LPY  C39  H35  SING  N  N  70  
LPY  C39  H36  SING  N  N  71  
LPY  C40  H37  SING  N  N  72  
LPY  C40  H38  SING  N  N  73  
LPY  C41  H39  SING  N  N  74  
LPY  C43  H40  SING  N  N  75  
LPY  C44  H41  SING  N  N  76  
LPY  C45  H42  SING  N  N  77  
LPY  C45  H43  SING  N  N  78  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LPY  SMILES            ACDLabs               12.01  "P(OC1C(O)C(O)C(O)C(O)C1O)(O)(=O)OCC(O)COC(=O)CCCCCCCCCCCC"  
LPY  InChI             InChI                 1.03   "InChI=1S/C22H43O12P/c1-2-3-4-5-6-7-8-9-10-11-12-16(24)32-13-15(23)14-33-35(30,31)34-22-20(28)18(26)17(25)19(27)21(22)29/h15,17-23,25-29H,2-14H2,1H3,(H,30,31)/t15-,17-,18-,19+,20-,21-,22-/m1/s1"  
LPY  InChIKey          InChI                 1.03   QGSQXOJTKFYHRK-FBYKMOGESA-N  
LPY  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCCCCCCC(=O)OC[C@@H](O)CO[P](O)(=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O"  
LPY  SMILES            CACTVS                3.385  "CCCCCCCCCCCCC(=O)OC[CH](O)CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O)[CH](O)[CH]1O"  
LPY  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC1[C@@H]([C@H](C([C@H]([C@H]1O)O)O)O)O)O"  
LPY  SMILES            "OpenEye OEToolkits"  1.9.2  "CCCCCCCCCCCCC(=O)OCC(COP(=O)(O)OC1C(C(C(C(C1O)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LPY  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R)-2-hydroxy-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl tridecanoate"  
LPY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "[(2R)-2-oxidanyl-3-[oxidanyl-[(2R,3R,5S,6R)-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propyl] tridecanoate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LPY  "Create component"    2015-01-22  PDBJ  
LPY  "Other modification"  2015-05-07  PDBJ  
LPY  "Modify synonyms"     2015-05-24  PDBJ  
LPY  "Initial release"     2015-07-15  RCSB  
LPY  "Modify synonyms"     2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     LPY
_pdbx_chem_comp_synonyms.name        sn-1-tridecanoyl-phosphatidylinositol
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
