data_O2Y
#

_chem_comp.id                                   O2Y
_chem_comp.name                                 "3-[(carboxymethyl)sulfanyl]pyridine-2-carboxylic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H7 N O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "3-(carboxymethylthio)picolinic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-06-05
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       213.210
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    O2Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6P5O
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
O2Y  O14  O1  O  0  1  N  N  N   3.880  -7.585   7.802  -3.519  -1.250  -0.001  O14  O2Y   1  
O2Y  C12  C1  C  0  1  N  N  N   3.787  -7.033   8.875  -3.474  -0.043  -0.002  C12  O2Y   2  
O2Y  O13  O2  O  0  1  N  N  N   4.754  -6.775   9.664  -4.610   0.671   0.002  O13  O2Y   3  
O2Y  C11  C2  C  0  1  N  N  N   2.415  -6.508   9.157  -2.141   0.661  -0.002  C11  O2Y   4  
O2Y  S10  S1  S  0  1  N  N  N   2.524  -4.739   9.650  -0.811  -0.566  -0.001  S10  O2Y   5  
O2Y  C6   C3  C  0  1  Y  N  N   0.794  -4.242   9.758   0.590   0.503  -0.001  C6   O2Y   6  
O2Y  C5   C4  C  0  1  Y  N  N  -0.194  -5.186   9.564   0.426   1.890   0.004  C5   O2Y   7  
O2Y  C4   C5  C  0  1  Y  N  N  -1.526  -4.821   9.664   1.555   2.686   0.003  C4   O2Y   8  
O2Y  C3   C6  C  0  1  Y  N  N  -1.864  -3.504   9.919   2.811   2.092  -0.002  C3   O2Y   9  
O2Y  N2   N1  N  0  1  Y  N  N  -0.921  -2.583  10.107   2.944   0.785  -0.006  N2   O2Y  10  
O2Y  C1   C7  C  0  1  Y  N  N   0.408  -2.909  10.059   1.890  -0.025   0.000  C1   O2Y  11  
O2Y  C7   C8  C  0  1  N  N  N   1.325  -1.865  10.285   2.088  -1.487   0.001  C7   O2Y  12  
O2Y  O8   O3  O  0  1  N  N  N   2.563  -2.150  10.287   1.127  -2.230   0.002  O8   O2Y  13  
O2Y  O9   O4  O  0  1  N  N  N   0.886  -0.688  10.538   3.335  -1.998   0.002  O9   O2Y  14  
O2Y  H1   H1  H  0  1  N  N  N   5.567  -7.083   9.281  -5.440   0.175   0.006  H1   O2Y  15  
O2Y  H2   H2  H  0  1  N  N  N   1.795  -6.599   8.253  -2.060   1.285  -0.893  H2   O2Y  16  
O2Y  H3   H3  H  0  1  N  N  N   1.961  -7.089   9.973  -2.061   1.286   0.887  H3   O2Y  17  
O2Y  H4   H4  H  0  1  N  N  N   0.071  -6.207   9.335  -0.560   2.330   0.007  H4   O2Y  18  
O2Y  H5   H5  H  0  1  N  N  N  -2.300  -5.564   9.543   1.463   3.762   0.007  H5   O2Y  19  
O2Y  H6   H6  H  0  1  N  N  N  -2.905  -3.220   9.966   3.693   2.715  -0.002  H6   O2Y  20  
O2Y  H7   H7  H  0  1  N  N  N   1.617  -0.108  10.716   3.415  -2.961   0.003  H7   O2Y  21  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
O2Y  O14  C12  DOUB  N  N   1  
O2Y  C12  C11  SING  N  N   2  
O2Y  C12  O13  SING  N  N   3  
O2Y  C11  S10  SING  N  N   4  
O2Y  C5   C4   DOUB  Y  N   5  
O2Y  C5   C6   SING  Y  N   6  
O2Y  S10  C6   SING  N  N   7  
O2Y  C4   C3   SING  Y  N   8  
O2Y  C6   C1   DOUB  Y  N   9  
O2Y  C3   N2   DOUB  Y  N  10  
O2Y  C1   N2   SING  Y  N  11  
O2Y  C1   C7   SING  N  N  12  
O2Y  C7   O8   DOUB  N  N  13  
O2Y  C7   O9   SING  N  N  14  
O2Y  O13  H1   SING  N  N  15  
O2Y  C11  H2   SING  N  N  16  
O2Y  C11  H3   SING  N  N  17  
O2Y  C5   H4   SING  N  N  18  
O2Y  C4   H5   SING  N  N  19  
O2Y  C3   H6   SING  N  N  20  
O2Y  O9   H7   SING  N  N  21  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
O2Y  SMILES            ACDLabs               12.01  "O=C(CSc1c(nccc1)C(=O)O)O"  
O2Y  InChI             InChI                 1.03   "InChI=1S/C8H7NO4S/c10-6(11)4-14-5-2-1-3-9-7(5)8(12)13/h1-3H,4H2,(H,10,11)(H,12,13)"  
O2Y  InChIKey          InChI                 1.03   LQCDNBQBBOQQIK-UHFFFAOYSA-N  
O2Y  SMILES_CANONICAL  CACTVS                3.385  "OC(=O)CSc1cccnc1C(O)=O"  
O2Y  SMILES            CACTVS                3.385  "OC(=O)CSc1cccnc1C(O)=O"  
O2Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c(nc1)C(=O)O)SCC(=O)O"  
O2Y  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c(nc1)C(=O)O)SCC(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
O2Y  "SYSTEMATIC NAME"  ACDLabs               12.01  "3-[(carboxymethyl)sulfanyl]pyridine-2-carboxylic acid"  
O2Y  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "3-(2-hydroxy-2-oxoethylsulfanyl)pyridine-2-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
O2Y  "Create component"  2019-06-05  RCSB  
O2Y  "Initial release"   2019-09-18  RCSB  
O2Y  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     O2Y
_pdbx_chem_comp_synonyms.name        "3-(carboxymethylthio)picolinic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
