data_PCY
# 
_chem_comp.id                                    PCY 
_chem_comp.name                                  Pactamycin 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H38 N4 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2000-12-15 
_chem_comp.pdbx_modified_date                    2014-10-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        558.623 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PCY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1HNX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PCY C1   C1   C 0 1 N N N 207.178 105.375 -40.337 4.865  -0.455 -0.808 C1   PCY 1  
PCY N2   N2   N 0 1 N N N 206.668 104.221 -39.486 3.890  -0.972 -0.034 N2   PCY 2  
PCY C3   C3   C 0 1 N N R 207.133 103.607 -37.982 2.869  -0.094 0.543  C3   PCY 3  
PCY N4   N4   N 0 1 N N N 206.392 106.688 -40.473 5.870  -1.241 -1.242 N4   PCY 4  
PCY O5   O5   O 0 1 N N N 208.289 105.202 -41.102 4.836  0.721  -1.118 O5   PCY 5  
PCY C6   C6   C 0 1 N N S 206.714 102.020 -37.914 3.533  0.997  1.387  C6   PCY 6  
PCY C7   C7   C 0 1 N N R 206.609 104.273 -36.600 1.896  -0.916 1.413  C7   PCY 7  
PCY C8   C8   C 0 1 N N S 208.820 103.713 -37.924 2.029  0.544  -0.577 C8   PCY 8  
PCY C9   C9   C 0 1 N N N 206.148 107.421 -41.921 6.929  -0.679 -2.083 C9   PCY 9  
PCY C10  C10  C 0 1 N N N 205.687 107.479 -39.248 5.902  -2.659 -0.874 C10  PCY 10 
PCY C11  C11  C 0 1 N N N 207.791 101.157 -38.879 4.085  2.088  0.467  C11  PCY 11 
PCY O12  O12  O 0 1 N N N 205.259 101.902 -38.490 4.602  0.428  2.145  O12  PCY 12 
PCY C13  C13  C 0 1 N N N 205.027 104.837 -36.776 2.559  -2.213 1.879  C13  PCY 13 
PCY O14  O14  O 0 1 N N N 206.708 103.196 -35.434 1.458  -0.148 2.535  O14  PCY 14 
PCY C15  C15  C 0 1 N N S 207.673 105.496 -36.318 0.709  -1.224 0.467  C15  PCY 15 
PCY N16  N16  N 0 1 N N N 209.659 103.897 -39.302 2.503  0.081  -1.888 N16  PCY 16 
PCY C17  C17  C 0 1 N N S 209.124 104.939 -36.872 0.573  0.087  -0.350 C17  PCY 17 
PCY C18  C18  C 0 1 N N N 207.588 105.845 -34.660 -0.565 -1.500 1.267  C18  PCY 18 
PCY O19  O19  O 0 1 N N N 207.350 106.746 -37.145 1.018  -2.324 -0.392 O19  PCY 19 
PCY N20  N20  N 0 1 N N N 210.086 104.369 -35.741 -0.166 1.093  0.418  N20  PCY 20 
PCY O21  O21  O 0 1 N N N 209.007 106.036 -34.062 -1.658 -1.785 0.355  O21  PCY 21 
PCY C22  C22  C 0 1 Y N N 211.362 105.237 -35.564 -0.787 2.157  -0.242 C22  PCY 22 
PCY C23  C23  C 0 1 N N N 209.403 107.257 -33.221 -2.860 -2.051 0.903  C23  PCY 23 
PCY C24  C24  C 0 1 Y N N 211.298 106.732 -36.001 -1.486 3.108  0.484  C24  PCY 24 
PCY C25  C25  C 0 1 Y N N 212.654 104.641 -34.973 -0.699 2.264  -1.625 C25  PCY 25 
PCY O26  O26  O 0 1 N N N 208.591 108.351 -33.041 -2.991 -2.046 2.111  O26  PCY 26 
PCY C27  C27  C 0 1 Y N N 210.842 107.182 -32.553 -4.015 -2.350 0.038  C27  PCY 27 
PCY C28  C28  C 0 1 Y N N 212.499 107.620 -35.841 -2.106 4.170  -0.181 C28  PCY 28 
PCY C29  C29  C 0 1 Y N N 213.879 105.561 -34.823 -1.311 3.314  -2.284 C29  PCY 29 
PCY C30  C30  C 0 1 Y N N 211.789 108.384 -32.482 -4.843 -1.317 -0.410 C30  PCY 30 
PCY C31  C31  C 0 1 Y N N 211.227 105.808 -31.986 -4.287 -3.671 -0.345 C31  PCY 31 
PCY C32  C32  C 0 1 N N N 212.382 109.156 -36.310 -2.850 5.186  0.582  C32  PCY 32 
PCY C33  C33  C 0 1 Y N N 213.795 107.051 -35.257 -2.016 4.264  -1.573 C33  PCY 33 
PCY C34  C34  C 0 1 N N N 211.354 109.877 -33.112 -4.556 0.108  -0.010 C34  PCY 34 
PCY C35  C35  C 0 1 Y N N 213.163 108.205 -31.824 -5.922 -1.603 -1.218 C35  PCY 35 
PCY O36  O36  O 0 1 N N N 210.206 104.651 -32.105 -3.488 -4.681 0.079  O36  PCY 36 
PCY C37  C37  C 0 1 Y N N 212.601 105.602 -31.326 -5.377 -3.940 -1.159 C37  PCY 37 
PCY C38  C38  C 0 1 N N N 213.662 110.019 -36.072 -3.517 6.330  -0.138 C38  PCY 38 
PCY O39  O39  O 0 1 N N N 211.153 109.778 -36.926 -2.927 5.102  1.789  O39  PCY 39 
PCY C40  C40  C 0 1 Y N N 213.574 106.811 -31.245 -6.190 -2.910 -1.589 C40  PCY 40 
PCY H2   H2   H 0 1 N N N 205.904 103.727 -39.900 3.865  -1.926 0.140  H2   PCY 41 
PCY H6   H6   H 0 1 N N N 206.766 101.654 -36.878 2.797  1.430  2.064  H6   PCY 42 
PCY H8   H8   H 0 1 N N N 209.175 102.787 -37.449 2.093  1.631  -0.519 H8   PCY 43 
PCY H91  H91  H 0 1 N N N 205.563 108.341 -41.773 7.736  -0.308 -1.451 H91  PCY 44 
PCY H92  H92  H 0 1 N N N 207.119 107.673 -42.373 7.314  -1.452 -2.748 H92  PCY 45 
PCY H93  H93  H 0 1 N N N 205.599 106.741 -42.588 6.526  0.142  -2.675 H93  PCY 46 
PCY H101 H101 H 0 0 N N N 205.195 108.386 -39.631 5.003  -3.151 -1.245 H101 PCY 47 
PCY H102 H102 H 0 0 N N N 204.938 106.828 -38.774 6.781  -3.129 -1.314 H102 PCY 48 
PCY H103 H103 H 0 0 N N N 206.449 107.761 -38.507 5.945  -2.751 0.211  H103 PCY 49 
PCY H111 H111 H 0 0 N N N 207.533 100.088 -38.852 3.416  2.218  -0.384 H111 PCY 50 
PCY H112 H112 H 0 0 N N N 207.729 101.523 -39.915 4.158  3.025  1.018  H112 PCY 51 
PCY H113 H113 H 0 0 N N N 208.815 101.297 -38.501 5.073  1.797  0.111  H113 PCY 52 
PCY H12  H12  H 0 1 N N N 204.981 100.994 -38.467 5.295  0.023  1.606  H12  PCY 53 
PCY H131 H131 H 0 0 N N N 204.689 105.285 -35.830 3.515  -1.983 2.351  H131 PCY 54 
PCY H132 H132 H 0 0 N N N 204.995 105.595 -37.572 1.911  -2.715 2.598  H132 PCY 55 
PCY H133 H133 H 0 0 N N N 204.366 103.998 -37.041 2.725  -2.865 1.022  H133 PCY 56 
PCY H14  H14  H 0 1 N N N 206.402 103.580 -34.621 0.843  -0.616 3.116  H14  PCY 57 
PCY H161 H161 H 0 0 N N N 210.636 103.942 -39.094 1.778  0.167  -2.585 H161 PCY 58 
PCY H162 H162 H 0 0 N N N 209.482 103.120 -39.906 3.335  0.578  -2.168 H162 PCY 59 
PCY H17  H17  H 0 1 N N N 209.633 105.752 -37.411 0.080  -0.105 -1.303 H17  PCY 60 
PCY H181 H181 H 0 0 N N N 207.009 106.769 -34.515 -0.405 -2.357 1.921  H181 PCY 61 
PCY H182 H182 H 0 0 N N N 207.088 105.014 -34.142 -0.813 -0.625 1.869  H182 PCY 62 
PCY H19  H19  H 0 1 N N N 207.985 107.426 -36.954 0.306  -2.557 -1.004 H19  PCY 63 
PCY H20  H20  H 0 1 N N N 209.588 104.349 -34.874 -0.224 1.021  1.383  H20  PCY 64 
PCY H24  H24  H 0 1 N N N 210.386 107.131 -36.421 -1.552 3.029  1.559  H24  PCY 65 
PCY H25  H25  H 0 1 N N N 212.699 103.605 -34.672 -0.150 1.523  -2.188 H25  PCY 66 
PCY H29  H29  H 0 1 N N N 214.799 105.170 -34.415 -1.239 3.391  -3.358 H29  PCY 67 
PCY H33  H33  H 0 1 N N N 214.658 107.691 -35.146 -2.493 5.083  -2.091 H33  PCY 68 
PCY H341 H341 H 0 0 N N N 210.853 110.472 -32.334 -3.894 0.565  -0.745 H341 PCY 69 
PCY H342 H342 H 0 0 N N N 212.255 110.407 -33.455 -5.490 0.667  0.036  H342 PCY 70 
PCY H343 H343 H 0 0 N N N 210.669 109.731 -33.960 -4.076 0.120  0.969  H343 PCY 71 
PCY H35  H35  H 0 1 N N N 213.845 109.040 -31.761 -6.561 -0.804 -1.564 H35  PCY 72 
PCY H36  H36  H 0 1 N N N 210.571 103.865 -31.716 -3.765 -5.077 0.917  H36  PCY 73 
PCY H37  H37  H 0 1 N N N 212.883 104.639 -30.928 -5.590 -4.956 -1.457 H37  PCY 74 
PCY H381 H381 H 0 0 N N N 213.480 111.049 -36.414 -3.340 6.237  -1.210 H381 PCY 75 
PCY H382 H382 H 0 0 N N N 213.905 110.027 -34.999 -4.589 6.306  0.057  H382 PCY 76 
PCY H383 H383 H 0 0 N N N 214.504 109.590 -36.635 -3.104 7.273  0.218  H383 PCY 77 
PCY H40  H40  H 0 1 N N N 214.543 106.688 -30.785 -7.038 -3.125 -2.223 H40  PCY 78 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PCY C1  N2   SING N N 1  
PCY C1  N4   SING N N 2  
PCY C1  O5   DOUB N N 3  
PCY N2  C3   SING N N 4  
PCY N2  H2   SING N N 5  
PCY C3  C6   SING N N 6  
PCY C3  C7   SING N N 7  
PCY C3  C8   SING N N 8  
PCY N4  C9   SING N N 9  
PCY N4  C10  SING N N 10 
PCY C6  C11  SING N N 11 
PCY C6  O12  SING N N 12 
PCY C6  H6   SING N N 13 
PCY C7  C13  SING N N 14 
PCY C7  O14  SING N N 15 
PCY C7  C15  SING N N 16 
PCY C8  N16  SING N N 17 
PCY C8  C17  SING N N 18 
PCY C8  H8   SING N N 19 
PCY C9  H91  SING N N 20 
PCY C9  H92  SING N N 21 
PCY C9  H93  SING N N 22 
PCY C10 H101 SING N N 23 
PCY C10 H102 SING N N 24 
PCY C10 H103 SING N N 25 
PCY C11 H111 SING N N 26 
PCY C11 H112 SING N N 27 
PCY C11 H113 SING N N 28 
PCY O12 H12  SING N N 29 
PCY C13 H131 SING N N 30 
PCY C13 H132 SING N N 31 
PCY C13 H133 SING N N 32 
PCY O14 H14  SING N N 33 
PCY C15 C17  SING N N 34 
PCY C15 C18  SING N N 35 
PCY C15 O19  SING N N 36 
PCY N16 H161 SING N N 37 
PCY N16 H162 SING N N 38 
PCY C17 N20  SING N N 39 
PCY C17 H17  SING N N 40 
PCY C18 O21  SING N N 41 
PCY C18 H181 SING N N 42 
PCY C18 H182 SING N N 43 
PCY O19 H19  SING N N 44 
PCY N20 C22  SING N N 45 
PCY N20 H20  SING N N 46 
PCY O21 C23  SING N N 47 
PCY C22 C24  DOUB Y N 48 
PCY C22 C25  SING Y N 49 
PCY C23 O26  DOUB N N 50 
PCY C23 C27  SING N N 51 
PCY C24 C28  SING Y N 52 
PCY C24 H24  SING N N 53 
PCY C25 C29  DOUB Y N 54 
PCY C25 H25  SING N N 55 
PCY C27 C30  DOUB Y N 56 
PCY C27 C31  SING Y N 57 
PCY C28 C32  SING N N 58 
PCY C28 C33  DOUB Y N 59 
PCY C29 C33  SING Y N 60 
PCY C29 H29  SING N N 61 
PCY C30 C34  SING N N 62 
PCY C30 C35  SING Y N 63 
PCY C31 O36  SING N N 64 
PCY C31 C37  DOUB Y N 65 
PCY C32 C38  SING N N 66 
PCY C32 O39  DOUB N N 67 
PCY C33 H33  SING N N 68 
PCY C34 H341 SING N N 69 
PCY C34 H342 SING N N 70 
PCY C34 H343 SING N N 71 
PCY C35 C40  DOUB Y N 72 
PCY C35 H35  SING N N 73 
PCY O36 H36  SING N N 74 
PCY C37 C40  SING Y N 75 
PCY C37 H37  SING N N 76 
PCY C38 H381 SING N N 77 
PCY C38 H382 SING N N 78 
PCY C38 H383 SING N N 79 
PCY C40 H40  SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PCY SMILES           ACDLabs              12.01 "O=C(c1cc(ccc1)NC2C(O)(C(O)(C(NC(=O)N(C)C)(C2N)C(O)C)C)COC(=O)c3c(cccc3O)C)C" 
PCY InChI            InChI                1.03  
"InChI=1S/C28H38N4O8/c1-15-9-7-12-20(35)21(15)24(36)40-14-27(39)23(30-19-11-8-10-18(13-19)16(2)33)22(29)28(17(3)34,26(27,4)38)31-25(37)32(5)6/h7-13,17,22-23,30,34-35,38-39H,14,29H2,1-6H3,(H,31,37)/t17-,22-,23-,26-,27+,28-/m0/s1" 
PCY InChIKey         InChI                1.03  WVIUOSJLUCTGFK-JUJPXXQGSA-N 
PCY SMILES_CANONICAL CACTVS               3.385 "C[C@H](O)[C@]1(NC(=O)N(C)C)[C@@H](N)[C@H](Nc2cccc(c2)C(C)=O)[C@](O)(COC(=O)c3c(C)cccc3O)[C@]1(C)O" 
PCY SMILES           CACTVS               3.385 "C[CH](O)[C]1(NC(=O)N(C)C)[CH](N)[CH](Nc2cccc(c2)C(C)=O)[C](O)(COC(=O)c3c(C)cccc3O)[C]1(C)O" 
PCY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1cccc(c1C(=O)OC[C@]2([C@H]([C@@H]([C@]([C@@]2(C)O)([C@H](C)O)NC(=O)N(C)C)N)Nc3cccc(c3)C(=O)C)O)O" 
PCY SMILES           "OpenEye OEToolkits" 1.7.6 "Cc1cccc(c1C(=O)OCC2(C(C(C(C2(C)O)(C(C)O)NC(=O)N(C)C)N)Nc3cccc(c3)C(=O)C)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PCY "SYSTEMATIC NAME" ACDLabs              12.01 "{(1S,2R,3R,4S,5S)-5-[(3-acetylphenyl)amino]-4-amino-3-[(dimethylcarbamoyl)amino]-1,2-dihydroxy-3-[(1S)-1-hydroxyethyl]-2-methylcyclopentyl}methyl 2-hydroxy-6-methylbenzoate"         
PCY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(1S,2R,3R,4S,5S)-4-azanyl-3-(dimethylcarbamoylamino)-5-[(3-ethanoylphenyl)amino]-2-methyl-1,2-bis(oxidanyl)-3-[(1S)-1-oxidanylethyl]cyclopentyl]methyl 2-methyl-6-oxidanyl-benzoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PCY "Create component"  2000-12-15 RCSB 
PCY "Modify descriptor" 2011-06-04 RCSB 
PCY "Modify name"       2013-05-13 RCSB 
PCY "Modify name"       2014-10-07 RCSB 
# 
