data_SAY
#

_chem_comp.id                                   SAY
_chem_comp.name                                 "[(2R,3S,5R)-3-hydroxy-5-(3-hydroxy-4-methanoyl-phenyl)oxolan-2-yl]methyl dihydrogen phosphate"
_chem_comp.type                                 "DNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C12 H15 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2'-DEOXY-1'-(3-HYDROXY-4-FORMYLPHENYL)RIBOSE-5'-MONOPHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-11-15
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       318.216
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SAY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2XY5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SAY  P       P       P  0  1  N  N  N  30.623  11.051  27.089  -4.282  -1.209   0.160  P       SAY   1  
SAY  O1P     O1P     O  0  1  N  N  N  30.783  11.403  28.509  -5.438  -0.479  -0.405  O1P     SAY   2  
SAY  O2P     O2P     O  0  1  N  N  N  30.163   9.651  26.979  -4.732  -1.965   1.509  O2P     SAY   3  
SAY  O3P     O3P     O  0  1  N  Y  N  29.693  12.080  26.306  -3.756  -2.291  -0.911  O3P     SAY   4  
SAY  "O5'"   "O5'"   O  0  1  N  N  N  31.948  11.188  26.215  -3.101  -0.168   0.496  "O5'"   SAY   5  
SAY  "C5'"   "C5'"   C  0  1  N  N  N  32.113  10.239  25.162  -2.557   0.731  -0.473  "C5'"   SAY   6  
SAY  "C4'"   "C4'"   C  0  1  N  N  R  32.916  10.774  23.963  -1.458   1.575   0.176  "C4'"   SAY   7  
SAY  "O4'"   "O4'"   O  0  1  N  N  N  32.133  11.711  23.211  -0.346   0.737   0.534  "O4'"   SAY   8  
SAY  "C3'"   "C3'"   C  0  1  N  N  S  34.154  11.523  24.433  -0.938   2.621  -0.830  "C3'"   SAY   9  
SAY  "O3'"   "O3'"   O  0  1  N  Y  N  35.235  11.164  23.573  -1.141   3.942  -0.326  "O3'"   SAY  10  
SAY  "C2'"   "C2'"   C  0  1  N  N  N  33.783  12.967  24.230   0.574   2.312  -0.951  "C2'"   SAY  11  
SAY  "C1'"   "C1'"   C  0  1  N  N  R  32.938  12.851  22.981   0.850   1.526   0.356  "C1'"   SAY  12  
SAY  CAA     CAA     C  0  1  Y  N  N  31.803  13.862  22.864   2.055   0.635   0.194  CAA     SAY  13  
SAY  CAB     CAB     C  0  1  Y  N  N  31.476  14.401  21.621   3.256   0.992   0.774  CAB     SAY  14  
SAY  CAF     CAF     C  0  1  Y  N  N  31.083  14.207  23.998   1.948  -0.541  -0.531  CAF     SAY  15  
SAY  CAE     CAE     C  0  1  Y  N  N  30.043  15.108  23.897   3.041  -1.365  -0.687  CAE     SAY  16  
SAY  CAD     CAD     C  0  1  Y  N  N  29.716  15.645  22.673   4.267  -1.013  -0.109  CAD     SAY  17  
SAY  CAG     CAG     C  0  1  N  N  N  28.573  16.606  22.731   5.437  -1.885  -0.270  CAG     SAY  18  
SAY  CAC     CAC     C  0  1  Y  N  N  30.429  15.311  21.519   4.368   0.178   0.630  CAC     SAY  19  
SAY  OAR     OAR     O  0  1  N  N  N  30.161  15.830  20.349   5.548   0.528   1.199  OAR     SAY  20  
SAY  OAH     OAH     O  0  1  N  Y  N  27.884  17.349  21.828   5.343  -2.914  -0.906  OAH     SAY  21  
SAY  H2P     H2P     H  0  1  N  N  N  30.064   9.421  26.063  -5.442  -2.609   1.381  H2P     SAY  22  
SAY  H3P     H3P     H  0  1  N  Y  N  29.508  12.827  26.863  -2.997  -2.808  -0.607  H3P     SAY  23  
SAY  "H5'1"  "H5'1"  H  0  0  N  N  N  32.648   9.368  25.569  -2.136   0.161  -1.301  "H5'1"  SAY  24  
SAY  "H5'2"  "H5'2"  H  0  0  N  N  N  31.108   9.990  24.792  -3.345   1.385  -0.845  "H5'2"  SAY  25  
SAY  "H4'"   "H4'"   H  0  1  N  N  N  33.193   9.904  23.349  -1.848   2.072   1.063  "H4'"   SAY  26  
SAY  "H3'"   "H3'"   H  0  1  N  Y  N  34.454  11.309  25.469  -1.432   2.501  -1.794  "H3'"   SAY  27  
SAY  "H1'"   "H1'"   H  0  1  N  N  N  33.638  12.912  22.135   0.988   2.210   1.194  "H1'"   SAY  28  
SAY  HA      HA      H  0  1  N  N  N  34.918  11.084  22.681  -0.832   4.641  -0.919  HA      SAY  29  
SAY  "H2'1"  "H2'1"  H  0  0  N  N  N  33.227  13.387  25.081   0.777   1.696  -1.826  "H2'1"  SAY  30  
SAY  "H2'2"  "H2'2"  H  0  0  N  N  N  34.639  13.653  24.143   1.157   3.233  -0.982  "H2'2"  SAY  31  
SAY  HAB     HAB     H  0  1  N  N  N  32.033  14.114  20.741   3.329   1.908   1.342  HAB     SAY  32  
SAY  HAF     HAF     H  0  1  N  N  N  31.335  13.773  24.954   1.003  -0.814  -0.977  HAF     SAY  33  
SAY  HAE     HAE     H  0  1  N  N  N  29.486  15.392  24.778   2.953  -2.280  -1.253  HAE     SAY  34  
SAY  HAG     HAG     H  0  1  N  N  N  28.205  16.743  23.737   6.380  -1.610   0.177  HAG     SAY  35  
SAY  HAR     HAR     H  0  1  N  N  N  30.096  16.774  20.428   5.666   0.193   2.098  HAR     SAY  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SAY  P      O1P     DOUB  N  N   1  
SAY  P      O2P     SING  N  N   2  
SAY  P      "O5'"   SING  N  N   3  
SAY  P      O3P     SING  N  N   4  
SAY  "O5'"  "C5'"   SING  N  N   5  
SAY  "C5'"  "C4'"   SING  N  N   6  
SAY  "C4'"  "O4'"   SING  N  N   7  
SAY  "C4'"  "C3'"   SING  N  N   8  
SAY  "O4'"  "C1'"   SING  N  N   9  
SAY  "C3'"  "O3'"   SING  N  N  10  
SAY  "C3'"  "C2'"   SING  N  N  11  
SAY  "C2'"  "C1'"   SING  N  N  12  
SAY  "C1'"  CAA     SING  N  N  13  
SAY  CAA    CAB     SING  Y  N  14  
SAY  CAA    CAF     DOUB  Y  N  15  
SAY  CAB    CAC     DOUB  Y  N  16  
SAY  CAF    CAE     SING  Y  N  17  
SAY  CAE    CAD     DOUB  Y  N  18  
SAY  CAD    CAG     SING  N  N  19  
SAY  CAG    OAH     DOUB  N  N  20  
SAY  CAD    CAC     SING  Y  N  21  
SAY  CAC    OAR     SING  N  N  22  
SAY  O2P    H2P     SING  N  N  23  
SAY  O3P    H3P     SING  N  N  24  
SAY  "C5'"  "H5'1"  SING  N  N  25  
SAY  "C5'"  "H5'2"  SING  N  N  26  
SAY  "C4'"  "H4'"   SING  N  N  27  
SAY  "C3'"  "H3'"   SING  N  N  28  
SAY  "C1'"  "H1'"   SING  N  N  29  
SAY  "O3'"  HA      SING  N  N  30  
SAY  "C2'"  "H2'1"  SING  N  N  31  
SAY  "C2'"  "H2'2"  SING  N  N  32  
SAY  CAB    HAB     SING  N  N  33  
SAY  CAF    HAF     SING  N  N  34  
SAY  CAE    HAE     SING  N  N  35  
SAY  CAG    HAG     SING  N  N  36  
SAY  OAR    HAR     SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SAY  SMILES_CANONICAL  CACTVS                3.352  "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)c2ccc(C=O)c(O)c2"  
SAY  SMILES            CACTVS                3.352  "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)c2ccc(C=O)c(O)c2"  
SAY  SMILES_CANONICAL  "OpenEye OEToolkits"  1.6.1  "c1cc(c(cc1[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O)O)C=O"  
SAY  SMILES            "OpenEye OEToolkits"  1.6.1  "c1cc(c(cc1C2CC(C(O2)COP(=O)(O)O)O)O)C=O"  
SAY  InChI             InChI                 1.03   "InChI=1S/C12H15O8P/c13-5-8-2-1-7(3-9(8)14)11-4-10(15)12(20-11)6-19-21(16,17)18/h1-3,5,10-12,14-15H,4,6H2,(H2,16,17,18)/t10-,11+,12+/m0/s1"  
SAY  InChIKey          InChI                 1.03   PCWRNNXGJWWYRH-QJPTWQEYSA-N  
#
_pdbx_chem_comp_identifier.comp_id          SAY
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.6.1
_pdbx_chem_comp_identifier.identifier       "[(2R,3S,5R)-3-hydroxy-5-(3-hydroxy-4-methanoyl-phenyl)oxolan-2-yl]methyl dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SAY  "Create component"      2010-11-15  EBI   
SAY  "Modify aromatic_flag"  2011-06-04  RCSB  
SAY  "Modify descriptor"     2011-06-04  RCSB  
SAY  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SAY
_pdbx_chem_comp_synonyms.name        "2'-DEOXY-1'-(3-HYDROXY-4-FORMYLPHENYL)RIBOSE-5'-MONOPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
