data_XTY
# 
_chem_comp.id                                    XTY 
_chem_comp.name                                  "(1R)-1,4-ANHYDRO-2-DEOXY-1-(6-METHYL-2,4-DIOXO-1,2,3,4-TETRAHYDROQUINAZOLIN-8-YL)-5-O-PHOSPHONO-D-ERYTHRO-PENTITOL" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C14 H17 N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-09-26 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        372.267 
_chem_comp.one_letter_code                       N 
_chem_comp.three_letter_code                     XTY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2ICZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XTY P      P      P 0 1 N N N -9.839  -9.271  0.414  0.240  4.324  -3.132 P      XTY 1  
XTY OP1    O1P    O 0 1 N N N -9.875  -10.334 1.443  -0.617 4.492  -1.771 OP1    XTY 2  
XTY OP2    O2P    O 0 1 N N N -11.016 -8.395  0.218  1.041  5.526  -3.538 OP2    XTY 3  
XTY "C5'"  "C5'"  C 0 1 N N N -7.368  -8.461  -0.080 0.425  1.800  -2.490 "C5'"  XTY 4  
XTY "C4'"  "C4'"  C 0 1 N N R -6.275  -7.505  0.390  1.445  0.683  -2.312 "C4'"  XTY 5  
XTY "O4'"  "O4'"  O 0 1 N N N -5.554  -7.034  -0.755 2.346  1.070  -1.255 "O4'"  XTY 6  
XTY "C3'"  "C3'"  C 0 1 N N S -6.781  -6.254  1.101  0.810  -0.632 -1.883 "C3'"  XTY 7  
XTY "C2'"  "C2'"  C 0 1 N N N -6.749  -5.175  0.030  0.863  -0.564 -0.374 "C2'"  XTY 8  
XTY "C1'"  "C1'"  C 0 1 N N R -5.567  -5.603  -0.845 2.161  0.197  -0.125 "C1'"  XTY 9  
XTY "O5'"  "O5'"  O 0 1 N N N -8.560  -8.335  0.704  1.106  2.980  -2.877 "O5'"  XTY 10 
XTY C2     C2     C 0 1 N N N -3.717  -7.802  -3.859 3.671  -1.549 3.467  C2     XTY 11 
XTY O2     O2     O 0 1 N N N -2.973  -8.736  -3.575 4.116  -2.698 3.437  O2     XTY 12 
XTY N3     N3     N 0 1 N N N -3.963  -7.463  -5.175 3.639  -0.793 4.639  N3     XTY 13 
XTY C4     C4     C 0 1 N N N -4.784  -6.430  -5.580 3.160  0.505  4.783  C4     XTY 14 
XTY O4     O4     O 0 1 N N N -4.944  -6.191  -6.775 3.160  1.115  5.847  O4     XTY 15 
XTY C5     C5     C 0 1 Y N N -5.414  -5.672  -4.587 2.634  1.120  3.549  C5     XTY 16 
XTY C6     C6     C 0 1 Y N N -5.181  -5.997  -3.226 2.653  0.386  2.361  C6     XTY 17 
XTY N      N      N 0 1 N N N -4.341  -7.051  -2.865 3.165  -0.920 2.343  N      XTY 18 
XTY CP     CP     C 0 1 Y N N -6.265  -4.598  -4.939 2.124  2.421  3.563  CP     XTY 19 
XTY CD     CD     C 0 1 Y N N -6.655  -4.180  -2.576 1.651  2.249  1.196  CD     XTY 20 
XTY C8     C8     C 0 1 Y N N -5.804  -5.251  -2.197 2.161  0.950  1.182  C8     XTY 21 
XTY C7     C7     C 0 1 Y N N -6.879  -3.859  -3.929 1.633  2.982  2.383  C7     XTY 22 
XTY C7A    C7A    C 0 1 N N N -7.799  -2.697  -4.294 1.086  4.370  2.391  C7A    XTY 23 
XTY "O3'"  "O3'"  O 0 1 N N N -5.805  -5.906  2.088  1.597  -1.728 -2.344 "O3'"  XTY 24 
XTY OP3    O3P    O 0 1 N Y N -9.469  -9.952  -0.999 -0.865 3.843  -4.211 OP3    XTY 25 
XTY HO1P   HO1P   H 0 0 N N N -9.883  -11.185 1.020  -1.179 5.288  -1.659 HO1P   XTY 26 
XTY HO3P   HO3P   H 0 0 N N N -9.396  -9.279  -1.666 -1.466 4.510  -4.604 HO3P   XTY 27 
XTY "H5'1" "1H5'" H 0 0 N N N -7.610  -8.232  -1.128 -0.100 1.980  -1.551 "H5'1" XTY 28 
XTY "H5'2" "2H5'" H 0 0 N N N -6.994  -9.490  0.029  -0.294 1.530  -3.265 "H5'2" XTY 29 
XTY "H4'"  "H4'"  H 0 1 N N N -5.670  -8.085  1.102  2.032  0.577  -3.231 "H4'"  XTY 30 
XTY "H3'"  "H3'"  H 0 1 N N N -7.772  -6.381  1.561  -0.203 -0.773 -2.272 "H3'"  XTY 31 
XTY "H2'1" "1H2'" H 0 0 N N N -6.596  -4.175  0.462  0.867  -1.543 0.116  "H2'1" XTY 32 
XTY "H2'2" "2H2'" H 0 0 N N N -7.693  -5.090  -0.528 0.004  0.007  -0.001 "H2'2" XTY 33 
XTY "H1'"  "H1'"  H 0 1 N N N -4.629  -5.129  -0.522 3.010  -0.495 -0.113 "H1'"  XTY 34 
XTY HN3    HN3    H 0 1 N N N -3.514  -8.005  -5.886 4.006  -1.238 5.476  HN3    XTY 35 
XTY HN     HN     H 0 1 N N N -4.188  -7.266  -1.900 3.167  -1.432 1.466  HN     XTY 36 
XTY HP     HP     H 0 1 N N N -6.437  -4.354  -5.977 2.105  3.002  4.482  HP     XTY 37 
XTY HD     HD     H 0 1 N N N -7.142  -3.597  -1.808 1.267  2.692  0.280  HD     XTY 38 
XTY H7A1   1H7A   H 0 0 N N N -8.020  -2.107  -3.393 1.871  5.088  2.658  H7A1   XTY 39 
XTY H7A2   2H7A   H 0 0 N N N -7.303  -2.057  -5.039 0.682  4.644  1.408  H7A2   XTY 40 
XTY H7A3   3H7A   H 0 0 N N N -8.737  -3.090  -4.714 0.264  4.469  3.111  H7A3   XTY 41 
XTY "HO3'" H3T    H 0 0 N Y N -4.952  -5.829  1.677  1.052  -2.207 -2.988 "HO3'" XTY 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XTY P     OP3    SING N N 1  
XTY P     OP2    DOUB N N 2  
XTY P     "O5'"  SING N N 3  
XTY P     OP1    SING N N 4  
XTY OP1   HO1P   SING N N 5  
XTY "C5'" "C4'"  SING N N 6  
XTY "C5'" "O5'"  SING N N 7  
XTY "C5'" "H5'1" SING N N 8  
XTY "C5'" "H5'2" SING N N 9  
XTY "C4'" "O4'"  SING N N 10 
XTY "C4'" "C3'"  SING N N 11 
XTY "C4'" "H4'"  SING N N 12 
XTY "O4'" "C1'"  SING N N 13 
XTY "C3'" "C2'"  SING N N 14 
XTY "C3'" "O3'"  SING N N 15 
XTY "C3'" "H3'"  SING N N 16 
XTY "C2'" "C1'"  SING N N 17 
XTY "C2'" "H2'1" SING N N 18 
XTY "C2'" "H2'2" SING N N 19 
XTY "C1'" C8     SING N N 20 
XTY "C1'" "H1'"  SING N N 21 
XTY C2    N3     SING N N 22 
XTY C2    O2     DOUB N N 23 
XTY C2    N      SING N N 24 
XTY N3    C4     SING N N 25 
XTY N3    HN3    SING N N 26 
XTY C4    O4     DOUB N N 27 
XTY C4    C5     SING N N 28 
XTY C5    CP     DOUB Y N 29 
XTY C5    C6     SING Y N 30 
XTY C6    N      SING N N 31 
XTY C6    C8     DOUB Y N 32 
XTY N     HN     SING N N 33 
XTY CP    C7     SING Y N 34 
XTY CP    HP     SING N N 35 
XTY CD    C7     DOUB Y N 36 
XTY CD    C8     SING Y N 37 
XTY CD    HD     SING N N 38 
XTY C7    C7A    SING N N 39 
XTY C7A   H7A1   SING N N 40 
XTY C7A   H7A2   SING N N 41 
XTY C7A   H7A3   SING N N 42 
XTY "O3'" "HO3'" SING N N 43 
XTY OP3   HO3P   SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XTY SMILES           ACDLabs              10.04 "O=P(OCC3OC(c2cc(cc1C(=O)NC(=O)Nc12)C)CC3O)(O)O"                                                                                                                          
XTY SMILES_CANONICAL CACTVS               3.341 "Cc1cc([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)c3NC(=O)NC(=O)c3c1"                                                                                                         
XTY SMILES           CACTVS               3.341 "Cc1cc([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)c3NC(=O)NC(=O)c3c1"                                                                                                             
XTY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cc(c2c(c1)C(=O)NC(=O)N2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O"                                                                                                         
XTY SMILES           "OpenEye OEToolkits" 1.5.0 "Cc1cc(c2c(c1)C(=O)NC(=O)N2)C3CC(C(O3)COP(=O)(O)O)O"                                                                                                                      
XTY InChI            InChI                1.03  "InChI=1S/C14H17N2O8P/c1-6-2-7(12-8(3-6)13(18)16-14(19)15-12)10-4-9(17)11(24-10)5-23-25(20,21)22/h2-3,9-11,17H,4-5H2,1H3,(H2,20,21,22)(H2,15,16,18,19)/t9-,10+,11+/m0/s1" 
XTY InChIKey         InChI                1.03  UTPMMFNXXUKJDB-HBNTYKKESA-N                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XTY "SYSTEMATIC NAME" ACDLabs              10.04 "(1R)-1,4-anhydro-2-deoxy-1-(6-methyl-2,4-dioxo-1,2,3,4-tetrahydroquinazolin-8-yl)-5-O-phosphono-D-erythro-pentitol" 
XTY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-(6-methyl-2,4-dioxo-1H-quinazolin-8-yl)oxolan-2-yl]methyl dihydrogen phosphate"             
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XTY "Create component"  2006-09-26 RCSB 
XTY "Modify descriptor" 2011-06-04 RCSB 
# 
