data_1FZ
# 
_chem_comp.id                                    1FZ 
_chem_comp.name                                  "5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H18 N3 O13 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-01-18 
_chem_comp.pdbx_modified_date                    2013-04-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        481.184 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1FZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4IR1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1FZ O2    O2  O 0 1 N N N 28.880 26.277 72.639 3.268  -0.588 -1.466 O2  1FZ 1  
1FZ O4    O4  O 0 1 N N N 33.328 26.887 72.192 5.893  -3.978 -0.312 O4  1FZ 2  
1FZ C4    C4  C 0 1 N N N 32.188 26.748 71.664 5.504  -2.838 -0.135 C4  1FZ 3  
1FZ C5    C5  C 0 1 N N N 32.010 26.749 70.162 6.048  -2.051 0.910  C5  1FZ 4  
1FZ C6    C6  C 0 1 N N N 30.722 26.585 69.665 5.598  -0.790 1.085  C6  1FZ 5  
1FZ C5M   C5M C 0 1 N N N 33.167 26.927 69.201 7.114  -2.615 1.814  C5M 1FZ 6  
1FZ N3    N3  N 0 1 N N N 31.085 26.590 72.425 4.555  -2.311 -0.934 N3  1FZ 7  
1FZ C2    C2  C 0 1 N N N 29.865 26.411 71.892 4.125  -1.051 -0.737 C2  1FZ 8  
1FZ N1    N1  N 0 1 N N N 29.663 26.406 70.483 4.629  -0.295 0.255  N1  1FZ 9  
1FZ "C1'" C1* C 0 1 N N R 28.287 26.243 69.950 4.141  1.073  0.445  C1* 1FZ 10 
1FZ "C2'" C2* C 0 1 N N N 27.736 27.586 69.541 4.505  1.934  -0.780 C2* 1FZ 11 
1FZ "C3'" C3* C 0 1 N N S 27.938 27.619 68.037 3.140  2.447  -1.302 C3* 1FZ 12 
1FZ "O3'" O3* O 0 1 N N N 26.954 28.453 67.433 3.228  3.816  -1.701 O3* 1FZ 13 
1FZ "O4'" O4* O 0 1 N N N 28.237 25.405 68.784 2.709  1.070  0.559  O4* 1FZ 14 
1FZ "C4'" C4* C 0 1 N N R 27.796 26.164 67.638 2.236  2.292  -0.052 C4* 1FZ 15 
1FZ "C5'" C5* C 0 1 N N N 28.596 25.780 66.408 0.768  2.157  -0.463 C5* 1FZ 16 
1FZ "O5'" O5* O 0 1 N N N 29.946 26.150 66.625 -0.053 2.133  0.707  O5* 1FZ 17 
1FZ PA    PA  P 0 1 N N N 30.882 26.852 65.477 -1.656 2.000  0.650  PA  1FZ 18 
1FZ O1A   O1A O 0 1 N N N 30.410 26.391 64.094 -2.190 2.909  -0.389 O1A 1FZ 19 
1FZ O2A   O2A O 0 1 N N N 32.331 26.453 65.760 -2.279 2.396  2.080  O2A 1FZ 20 
1FZ N3A   N3A N 0 1 N N N 30.704 28.449 65.536 -2.075 0.413  0.275  N3A 1FZ 21 
1FZ PB    PB  P 0 1 N N N 29.445 29.324 64.966 -3.746 0.230  0.206  PB  1FZ 22 
1FZ O1B   O1B O 0 1 N N N 28.676 30.091 66.004 -4.345 1.203  -0.928 O1B 1FZ 23 
1FZ O2B   O2B O 0 1 N N N 28.422 28.549 64.182 -4.336 0.580  1.517  O2B 1FZ 24 
1FZ O3B   O3B O 0 1 N N N 30.232 30.427 64.110 -4.105 -1.298 -0.154 O3B 1FZ 25 
1FZ PG    PG  P 0 1 N N N 30.746 30.126 62.609 -5.483 -2.104 -0.363 PG  1FZ 26 
1FZ O1G   O1G O 0 1 N N N 30.805 28.627 62.392 -6.168 -2.375 1.068  O1G 1FZ 27 
1FZ O3G   O3G O 0 1 N N N 29.772 30.735 61.661 -6.399 -1.304 -1.206 O3G 1FZ 28 
1FZ O2G   O2G O 0 1 N N N 32.080 30.825 62.444 -5.177 -3.509 -1.087 O2G 1FZ 29 
1FZ H1    H1  H 0 1 N N N 30.565 26.601 68.597 6.001  -0.176 1.876  H1  1FZ 30 
1FZ H2    H2  H 0 1 N N N 34.102 27.042 69.769 7.340  -3.638 1.515  H2  1FZ 31 
1FZ H3    H3  H 0 1 N N N 33.240 26.045 68.548 8.015  -2.006 1.736  H3  1FZ 32 
1FZ H4    H4  H 0 1 N N N 32.999 27.824 68.587 6.758  -2.607 2.844  H4  1FZ 33 
1FZ H5    H5  H 0 1 N N N 31.179 26.607 73.420 4.180  -2.842 -1.654 H5  1FZ 34 
1FZ H6    H6  H 0 1 N N N 27.644 25.822 70.737 4.584  1.503  1.344  H6  1FZ 35 
1FZ H7    H7  H 0 1 N N N 28.290 28.402 70.029 5.139  2.770  -0.485 H7  1FZ 36 
1FZ H8    H8  H 0 1 N N N 26.669 27.665 69.795 5.002  1.329  -1.538 H8  1FZ 37 
1FZ H9    H9  H 0 1 N N N 28.954 27.972 67.805 2.779  1.827  -2.122 H9  1FZ 38 
1FZ H10   H10 H 0 1 N N N 27.085 29.351 67.713 3.852  3.976  -2.423 H10 1FZ 39 
1FZ H11   H11 H 0 1 N N N 26.733 25.955 67.445 2.370  3.135  0.626  H11 1FZ 40 
1FZ H12   H12 H 0 1 N N N 28.202 26.309 65.527 0.486  3.004  -1.087 H12 1FZ 41 
1FZ H13   H13 H 0 1 N N N 28.529 24.694 66.244 0.631  1.232  -1.022 H13 1FZ 42 
1FZ H14   H14 H 0 1 N N N 32.682 25.983 65.013 -1.972 1.840  2.810  H14 1FZ 43 
1FZ H15   H15 H 0 1 N N N 31.506 28.815 65.064 -1.668 -0.233 0.935  H15 1FZ 44 
1FZ H16   H16 H 0 1 N N N 27.749 29.904 65.915 -4.002 1.031  -1.816 H16 1FZ 45 
1FZ H17   H17 H 0 1 N N N 30.207 28.384 61.695 -5.623 -2.895 1.674  H17 1FZ 46 
1FZ H18   H18 H 0 1 N N N 32.006 31.496 61.776 -5.964 -4.049 -1.245 H18 1FZ 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1FZ O3G   PG    DOUB N N 1  
1FZ O1G   PG    SING N N 2  
1FZ O2G   PG    SING N N 3  
1FZ PG    O3B   SING N N 4  
1FZ O1A   PA    DOUB N N 5  
1FZ O3B   PB    SING N N 6  
1FZ O2B   PB    DOUB N N 7  
1FZ PB    N3A   SING N N 8  
1FZ PB    O1B   SING N N 9  
1FZ PA    N3A   SING N N 10 
1FZ PA    O2A   SING N N 11 
1FZ PA    "O5'" SING N N 12 
1FZ "C5'" "O5'" SING N N 13 
1FZ "C5'" "C4'" SING N N 14 
1FZ "O3'" "C3'" SING N N 15 
1FZ "C4'" "C3'" SING N N 16 
1FZ "C4'" "O4'" SING N N 17 
1FZ "C3'" "C2'" SING N N 18 
1FZ "O4'" "C1'" SING N N 19 
1FZ C5M   C5    SING N N 20 
1FZ "C2'" "C1'" SING N N 21 
1FZ C6    C5    DOUB N N 22 
1FZ C6    N1    SING N N 23 
1FZ "C1'" N1    SING N N 24 
1FZ C5    C4    SING N N 25 
1FZ N1    C2    SING N N 26 
1FZ C4    O4    DOUB N N 27 
1FZ C4    N3    SING N N 28 
1FZ C2    N3    SING N N 29 
1FZ C2    O2    DOUB N N 30 
1FZ C6    H1    SING N N 31 
1FZ C5M   H2    SING N N 32 
1FZ C5M   H3    SING N N 33 
1FZ C5M   H4    SING N N 34 
1FZ N3    H5    SING N N 35 
1FZ "C1'" H6    SING N N 36 
1FZ "C2'" H7    SING N N 37 
1FZ "C2'" H8    SING N N 38 
1FZ "C3'" H9    SING N N 39 
1FZ "O3'" H10   SING N N 40 
1FZ "C4'" H11   SING N N 41 
1FZ "C5'" H12   SING N N 42 
1FZ "C5'" H13   SING N N 43 
1FZ O2A   H14   SING N N 44 
1FZ N3A   H15   SING N N 45 
1FZ O1B   H16   SING N N 46 
1FZ O1G   H17   SING N N 47 
1FZ O2G   H18   SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1FZ SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)NP(=O)(O)OCC2OC(N1C(=O)NC(=O)C(=C1)C)CC2O"                                                                                                                                 
1FZ InChI            InChI                1.03  "InChI=1S/C10H18N3O13P3/c1-5-3-13(10(16)11-9(5)15)8-2-6(14)7(25-8)4-24-27(17,18)12-28(19,20)26-29(21,22)23/h3,6-8,14H,2,4H2,1H3,(H,11,15,16)(H2,21,22,23)(H3,12,17,18,19,20)/t6-,7+,8+/m0/s1" 
1FZ InChIKey         InChI                1.03  YRKUYVYMPXAOAT-XLPZGREQSA-N                                                                                                                                                                   
1FZ SMILES_CANONICAL CACTVS               3.370 "CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                                              
1FZ SMILES           CACTVS               3.370 "CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                                                  
1FZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(NP(=O)(O)OP(=O)(O)O)O)O"                                                                                                                    
1FZ SMILES           "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(NP(=O)(O)OP(=O)(O)O)O)O"                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1FZ "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine"                                                                    
1FZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-N-[oxidanyl(phosphonooxy)phosphoryl]phosphonamidic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1FZ "Create component" 2013-01-18 RCSB 
1FZ "Initial release"  2013-04-10 RCSB 
# 
