data_2GZ
#

_chem_comp.id                                   2GZ
_chem_comp.name                                 "P-((((benzyloxy)carbonyl)amino)methyl)-N-((S)-4-methyl-1-(neopentylamino)-1-oxopentan-2-yl)phosphonamidic acid"
_chem_comp.type                                 peptide-like
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H34 N3 O5 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N~2~-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-(2,2-dimethylpropyl)-L-leucinamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-10-17
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       427.475
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    2GZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4N66
_chem_comp.pdbx_subcomponent_list               "PHQ PGL LEU NPT"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2GZ  C7   C7   C  0  1  N  N  N  13.578  -41.483  10.936   -5.289  -1.161   0.387  C7    PHQ   1  
2GZ  C6   C6   C  0  1  Y  N  N  14.954  -41.068  11.376   -6.617  -0.925  -0.285  C6    PHQ   2  
2GZ  C1   C1   C  0  1  Y  N  N  15.131  -40.488  12.637   -6.717  -0.994  -1.662  C1    PHQ   3  
2GZ  C2   C2   C  0  1  Y  N  N  16.398  -40.089  13.063   -7.935  -0.778  -2.278  C2    PHQ   4  
2GZ  C3   C3   C  0  1  Y  N  N  17.503  -40.271  12.234   -9.053  -0.491  -1.518  C3    PHQ   5  
2GZ  C4   C4   C  0  1  Y  N  N  17.339  -40.851  10.978   -8.953  -0.421  -0.141  C4    PHQ   6  
2GZ  C5   C5   C  0  1  Y  N  N  16.070  -41.242  10.543   -7.736  -0.644   0.476  C5    PHQ   7  
2GZ  C9   C9   C  0  1  N  N  N  12.401  -40.771   8.860   -3.368   0.063   1.099  C9    PHQ   8  
2GZ  O10  O10  O  0  1  N  N  N  11.795  -41.826   8.732   -2.914  -0.994   1.491  O10   PHQ   9  
2GZ  O8   O8   O  0  1  N  N  N  13.003  -40.491  10.051   -4.580   0.100   0.515  O8    PHQ  10  
2GZ  N11  N11  N  0  1  N  N  N  12.508  -39.862   7.849   -2.657   1.198   1.248  N     PGL  11  
2GZ  C12  C12  C  0  1  N  N  N  11.862  -40.059   6.560   -1.337   1.158   1.883  C     PGL  12  
2GZ  P13  P13  P  0  1  N  N  N  11.442  -38.394   5.925   -0.048   1.035   0.600  P     PGL  13  
2GZ  O15  O15  O  0  1  N  N  N  12.572  -37.433   6.124   -0.129   2.211  -0.295  O1    PGL  14  
2GZ  O14  O14  O  0  1  N  N  N  10.078  -38.009   6.463   -0.272  -0.309  -0.258  O2    PGL  15  
2GZ  N16  N16  N  0  1  N  N  N  11.230  -38.810   4.257    1.467   0.989   1.330  N     LEU  16  
2GZ  C17  C17  C  0  1  N  N  S  10.030  -38.343   3.524    2.525   0.774   0.333  CA    LEU  17  
2GZ  C22  C22  C  0  1  N  N  N   8.804  -39.198   3.845    3.618  -0.072   0.935  C     LEU  18  
2GZ  O23  O23  O  0  1  N  N  N   7.687  -38.706   3.878    3.659  -0.246   2.134  O     LEU  19  
2GZ  C18  C18  C  0  1  N  N  N  10.368  -38.416   2.043    3.103   2.124  -0.095  CB    LEU  20  
2GZ  C19  C19  C  0  1  N  N  N   9.281  -37.870   1.113    4.104   1.912  -1.233  CG    LEU  21  
2GZ  C20  C20  C  0  1  N  N  N   9.153  -36.355   1.260    3.363   1.423  -2.479  CD1   LEU  22  
2GZ  C21  C21  C  0  1  N  N  N   9.631  -38.250  -0.329    4.809   3.234  -1.545  CD2   LEU  23  
2GZ  N24  N24  N  0  1  N  N  N   9.065  -40.538   4.057    4.548  -0.636   0.139  N     NPT  24  
2GZ  C25  C25  C  0  1  N  N  N   8.039  -41.516   4.384    5.545  -1.546   0.709  C1    NPT  25  
2GZ  C26  C26  C  0  1  N  N  N   7.655  -42.501   3.266    6.475  -2.043  -0.399  C2    NPT  26  
2GZ  C27  C27  C  0  1  N  N  N   7.119  -41.663   2.107    7.516  -2.993   0.196  C3    NPT  27  
2GZ  C28  C28  C  0  1  N  N  N   8.844  -43.314   2.753    5.656  -2.783  -1.459  C4    NPT  28  
2GZ  C29  C29  C  0  1  N  N  N   6.525  -43.427   3.716    7.183  -0.849  -1.044  C5    NPT  29  
2GZ  H27  H27  H  0  1  N  N  N  12.934  -41.594  11.821   -5.453  -1.587   1.377  H27   PHQ  30  
2GZ  H28  H28  H  0  1  N  N  N  13.643  -42.445  10.407   -4.696  -1.852  -0.212  H28   PHQ  31  
2GZ  H29  H29  H  0  1  N  N  N  14.279  -40.348  13.286   -5.843  -1.218  -2.256  H29   PHQ  32  
2GZ  H30  H30  H  0  1  N  N  N  16.523  -39.638  14.037   -8.013  -0.832  -3.354  H30   PHQ  33  
2GZ  H31  H31  H  0  1  N  N  N  18.484  -39.963  12.564  -10.005  -0.322  -2.000  H31   PHQ  34  
2GZ  H32  H32  H  0  1  N  N  N  18.196  -40.999  10.338   -9.827  -0.197   0.453  H32   PHQ  35  
2GZ  H33  H33  H  0  1  N  N  N  15.948  -41.679   9.563   -7.658  -0.589   1.552  H33   PHQ  36  
2GZ  H34  H34  H  0  1  N  N  N  13.048  -39.033   7.998   -3.019   2.042   0.935  HN1   PGL  37  
2GZ  H25  H25  H  0  1  N  N  N  10.949  -40.660   6.681   -1.186   2.068   2.464  H1    PGL  38  
2GZ  H26  H26  H  0  1  N  N  N  12.547  -40.568   5.866   -1.278   0.292   2.543  H2    PGL  39  
2GZ  H24  H24  H  0  1  N  N  N  10.130  -37.157   6.879   -0.232  -1.121   0.266  HO2   PGL  40  
2GZ  H1   H1   H  0  1  N  N  N  11.229  -39.809   4.206    1.501   0.283   2.050  H     LEU  41  
2GZ  H2   H2   H  0  1  N  N  N   9.817  -37.298   3.793    2.108   0.265  -0.535  HA    LEU  42  
2GZ  H3   H3   H  0  1  N  N  N  10.544  -39.470   1.783    2.297   2.773  -0.437  HB2   LEU  43  
2GZ  H4   H4   H  0  1  N  N  N  11.288  -37.838   1.872    3.609   2.588   0.752  HB3   LEU  44  
2GZ  H5   H5   H  0  1  N  N  N   8.320  -38.335   1.379    4.842   1.168  -0.934  HG    LEU  45  
2GZ  H6   H6   H  0  1  N  N  N   8.902  -36.107   2.302    4.084   1.202  -3.266  HD11  LEU  46  
2GZ  H7   H7   H  0  1  N  N  N  10.107  -35.879   0.990    2.801   0.522  -2.237  HD12  LEU  47  
2GZ  H8   H8   H  0  1  N  N  N   8.358  -35.988   0.594    2.678   2.199  -2.822  HD13  LEU  48  
2GZ  H9   H9   H  0  1  N  N  N   9.718  -39.344  -0.410    4.071   3.978  -1.844  HD21  LEU  49  
2GZ  H10  H10  H  0  1  N  N  N   8.839  -37.894  -1.004    5.337   3.582  -0.657  HD22  LEU  50  
2GZ  H11  H11  H  0  1  N  N  N  10.588  -37.785  -0.609    5.522   3.083  -2.355  HD23  LEU  51  
2GZ  H12  H12  H  0  1  N  N  N  10.011  -40.853   3.982    4.557  -0.440  -0.811  HN1   NPT  52  
2GZ  H13  H13  H  0  1  N  N  N   7.131  -40.966   4.672    6.128  -1.019   1.464  H11   NPT  53  
2GZ  H14  H14  H  0  1  N  N  N   8.398  -42.105   5.241    5.040  -2.396   1.168  H12   NPT  54  
2GZ  H15  H15  H  0  1  N  N  N   6.261  -41.067   2.451    8.100  -2.465   0.951  H31   NPT  55  
2GZ  H16  H16  H  0  1  N  N  N   7.910  -40.990   1.744    7.012  -3.843   0.655  H32   NPT  56  
2GZ  H17  H17  H  0  1  N  N  N   6.800  -42.328   1.291    8.179  -3.346  -0.594  H33   NPT  57  
2GZ  H18  H18  H  0  1  N  N  N   9.249  -43.928   3.571    6.319  -3.136  -2.249  H41   NPT  58  
2GZ  H19  H19  H  0  1  N  N  N   8.514  -43.968   1.933    5.152  -3.633  -1.000  H42   NPT  59  
2GZ  H20  H20  H  0  1  N  N  N   9.624  -42.631   2.386    4.914  -2.106  -1.883  H43   NPT  60  
2GZ  H21  H21  H  0  1  N  N  N   6.872  -44.050   4.553    7.766  -0.322  -0.289  H51   NPT  61  
2GZ  H22  H22  H  0  1  N  N  N   5.664  -42.824   4.040    7.846  -1.203  -1.834  H52   NPT  62  
2GZ  H23  H23  H  0  1  N  N  N   6.225  -44.073   2.878    6.441  -0.172  -1.468  H53   NPT  63  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2GZ  C21  C19  SING  N  N   1  
2GZ  C19  C20  SING  N  N   2  
2GZ  C19  C18  SING  N  N   3  
2GZ  C18  C17  SING  N  N   4  
2GZ  C27  C26  SING  N  N   5  
2GZ  C28  C26  SING  N  N   6  
2GZ  C26  C29  SING  N  N   7  
2GZ  C26  C25  SING  N  N   8  
2GZ  C17  C22  SING  N  N   9  
2GZ  C17  N16  SING  N  N  10  
2GZ  C22  O23  DOUB  N  N  11  
2GZ  C22  N24  SING  N  N  12  
2GZ  N24  C25  SING  N  N  13  
2GZ  N16  P13  SING  N  N  14  
2GZ  P13  O15  DOUB  N  N  15  
2GZ  P13  O14  SING  N  N  16  
2GZ  P13  C12  SING  N  N  17  
2GZ  C12  N11  SING  N  N  18  
2GZ  N11  C9   SING  N  N  19  
2GZ  O10  C9   DOUB  N  N  20  
2GZ  C9   O8   SING  N  N  21  
2GZ  O8   C7   SING  N  N  22  
2GZ  C5   C4   DOUB  Y  N  23  
2GZ  C5   C6   SING  Y  N  24  
2GZ  C7   C6   SING  N  N  25  
2GZ  C4   C3   SING  Y  N  26  
2GZ  C6   C1   DOUB  Y  N  27  
2GZ  C3   C2   DOUB  Y  N  28  
2GZ  C1   C2   SING  Y  N  29  
2GZ  N16  H1   SING  N  N  30  
2GZ  C17  H2   SING  N  N  31  
2GZ  C18  H3   SING  N  N  32  
2GZ  C18  H4   SING  N  N  33  
2GZ  C19  H5   SING  N  N  34  
2GZ  C20  H6   SING  N  N  35  
2GZ  C20  H7   SING  N  N  36  
2GZ  C20  H8   SING  N  N  37  
2GZ  C21  H9   SING  N  N  38  
2GZ  C21  H10  SING  N  N  39  
2GZ  C21  H11  SING  N  N  40  
2GZ  N24  H12  SING  N  N  41  
2GZ  C25  H13  SING  N  N  42  
2GZ  C25  H14  SING  N  N  43  
2GZ  C27  H15  SING  N  N  44  
2GZ  C27  H16  SING  N  N  45  
2GZ  C27  H17  SING  N  N  46  
2GZ  C28  H18  SING  N  N  47  
2GZ  C28  H19  SING  N  N  48  
2GZ  C28  H20  SING  N  N  49  
2GZ  C29  H21  SING  N  N  50  
2GZ  C29  H22  SING  N  N  51  
2GZ  C29  H23  SING  N  N  52  
2GZ  O14  H24  SING  N  N  53  
2GZ  C12  H25  SING  N  N  54  
2GZ  C12  H26  SING  N  N  55  
2GZ  C7   H27  SING  N  N  56  
2GZ  C7   H28  SING  N  N  57  
2GZ  C1   H29  SING  N  N  58  
2GZ  C2   H30  SING  N  N  59  
2GZ  C3   H31  SING  N  N  60  
2GZ  C4   H32  SING  N  N  61  
2GZ  C5   H33  SING  N  N  62  
2GZ  N11  H34  SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2GZ  SMILES            ACDLabs               12.01  "O=C(NCC(C)(C)C)C(NP(=O)(O)CNC(=O)OCc1ccccc1)CC(C)C"  
2GZ  InChI             InChI                 1.03   "InChI=1S/C20H34N3O5P/c1-15(2)11-17(18(24)21-13-20(3,4)5)23-29(26,27)14-22-19(25)28-12-16-9-7-6-8-10-16/h6-10,15,17H,11-14H2,1-5H3,(H,21,24)(H,22,25)(H2,23,26,27)/t17-/m0/s1"  
2GZ  InChIKey          InChI                 1.03   GRURGYQNFDMDDQ-KRWDZBQOSA-N  
2GZ  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](N[P](O)(=O)CNC(=O)OCc1ccccc1)C(=O)NCC(C)(C)C"  
2GZ  SMILES            CACTVS                3.385  "CC(C)C[CH](N[P](O)(=O)CNC(=O)OCc1ccccc1)C(=O)NCC(C)(C)C"  
2GZ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CC(C)C[C@@H](C(=O)NCC(C)(C)C)NP(=O)(CNC(=O)OCc1ccccc1)O"  
2GZ  SMILES            "OpenEye OEToolkits"  1.7.6  "CC(C)CC(C(=O)NCC(C)(C)C)NP(=O)(CNC(=O)OCc1ccccc1)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2GZ  "SYSTEMATIC NAME"  ACDLabs               12.01  "N~2~-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-(2,2-dimethylpropyl)-L-leucinamide"  
2GZ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "N-[(2S)-1-(2,2-dimethylpropylamino)-4-methyl-1-oxidanylidene-pentan-2-yl]-(phenylmethoxycarbonylaminomethyl)phosphonamidic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2GZ  "Create component"  2013-10-17  RCSB  
2GZ  "Modify synonyms"   2013-11-12  RCSB  
2GZ  "Initial release"   2014-04-02  RCSB  
2GZ  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     2GZ
_pdbx_chem_comp_synonyms.name        "N~2~-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-(2,2-dimethylpropyl)-L-leucinamide"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
