data_68Z
# 
_chem_comp.id                                    68Z 
_chem_comp.name                                  "1R,2S,4R)-4-[2-azanyl-6,8-bis(oxidanylidene)-1,7-dihydropurin-9-yl]-2-oxidanyl-cyclopentyl]methyl dihydrogen phosphate" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H16 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               DG 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-12-15 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        361.248 
_chem_comp.one_letter_code                       G 
_chem_comp.three_letter_code                     68Z 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4CIS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
68Z P      P      P 0 1 N N N -11.455 -13.843 26.543 -5.539 0.153  -0.400 P      68Z 1  
68Z O1P    O1P    O 0 1 N N N -11.015 -12.439 26.457 -6.635 -0.652 0.461  O1P    68Z 2  
68Z O2P    O2P    O 0 1 N N N -12.528 -14.099 27.511 -5.567 1.584  -0.021 O2P    68Z 3  
68Z "O5'"  "O5'"  O 0 1 N N N -12.022 -14.282 25.121 -4.076 -0.452 -0.106 "O5'"  68Z 4  
68Z "C5'"  "C5'"  C 0 1 N N N -11.179 -14.343 23.986 -2.878 0.115  -0.639 "C5'"  68Z 5  
68Z "C4'"  "C4'"  C 0 1 N N R -11.950 -14.757 22.749 -1.673 -0.700 -0.165 "C4'"  68Z 6  
68Z "C3'"  "C3'"  C 0 1 N N S -12.490 -16.164 22.831 -1.494 -0.562 1.361  "C3'"  68Z 7  
68Z "C2'"  "C2'"  C 0 1 N N N -11.484 -17.095 22.213 0.022  -0.510 1.623  "C2'"  68Z 8  
68Z "C1'"  "C1'"  C 0 1 N N R -10.769 -16.216 21.215 0.711  -0.619 0.247  "C1'"  68Z 9  
68Z "C6'"  "C6'"  C 0 1 N N N -11.022 -14.763 21.552 -0.362 -0.124 -0.755 "C6'"  68Z 10 
68Z N9     N9     N 0 1 N N N -9.342  -16.531 21.218 1.895  0.242  0.197  N9     68Z 11 
68Z C4     C4     C 0 1 N N N -8.354  -15.961 21.892 3.185  -0.179 -0.054 C4     68Z 12 
68Z N3     N3     N 0 1 N N N -8.316  -14.964 22.797 3.730  -1.375 -0.308 N3     68Z 13 
68Z C2     C2     C 0 1 N N N -7.151  -14.583 23.350 5.022  -1.501 -0.518 C2     68Z 14 
68Z N2     N2     N 0 1 N N N -7.128  -13.578 24.250 5.538  -2.746 -0.775 N2     68Z 15 
68Z N1     N1     N 0 1 N N N -6.007  -15.189 23.010 5.860  -0.429 -0.487 N1     68Z 16 
68Z C6     C6     C 0 1 N N N -5.994  -16.187 22.116 5.372  0.806  -0.235 C6     68Z 17 
68Z O6     O6     O 0 1 N N N -4.926  -16.730 21.829 6.113  1.776  -0.205 O6     68Z 18 
68Z C5     C5     C 0 1 N N N -7.175  -16.606 21.531 3.995  0.949  -0.011 C5     68Z 19 
68Z N7     N7     N 0 1 N N N -7.460  -17.558 20.627 3.164  2.037  0.268  N7     68Z 20 
68Z C8     C8     C 0 1 N N N -8.775  -17.455 20.487 1.903  1.575  0.383  C8     68Z 21 
68Z O8     O8     O 0 1 N N N -9.468  -18.183 19.708 0.924  2.258  0.620  O8     68Z 22 
68Z "O3'"  "O3'"  O 0 1 N N N -13.786 -16.208 22.134 -2.067 -1.690 2.025  "O3'"  68Z 23 
68Z O3P    O3P    O 0 1 N Y N -10.077 -14.612 26.683 -5.874 0.007  -1.968 O3P    68Z 24 
68Z H1P    H1P    H 0 1 N N N -11.518 -11.911 27.066 -7.542 -0.340 0.333  H1P    68Z 25 
68Z H3P    H3P    H 0 1 N N N -10.112 -15.192 27.435 -5.873 -0.906 -2.287 H3P    68Z 26 
68Z "H5'1" "H5'1" H 0 0 N N N -10.735 -13.351 23.816 -2.921 0.100  -1.728 "H5'1" 68Z 27 
68Z "H5'2" "H5'2" H 0 0 N N N -10.380 -15.076 24.172 -2.778 1.144  -0.294 "H5'2" 68Z 28 
68Z "H4'"  "H4'"  H 0 1 N N N -12.776 -14.052 22.574 -1.790 -1.748 -0.442 "H4'"  68Z 29 
68Z "H3'A" "H3'A" H 0 0 N N N -12.630 -16.434 23.888 -1.964 0.357  1.710  "H3'A" 68Z 30 
68Z "H6'1" "H6'1" H 0 0 N N N -11.496 -14.252 20.701 -0.176 -0.527 -1.751 "H6'1" 68Z 31 
68Z "H6'2" "H6'2" H 0 0 N N N -10.076 -14.260 21.801 -0.395 0.965  -0.779 "H6'2" 68Z 32 
68Z "H2'1" "H2'1" H 0 0 N N N -10.786 -17.481 22.971 0.286  0.434  2.099  "H2'1" 68Z 33 
68Z "H2'2" "H2'2" H 0 0 N N N -11.982 -17.937 21.711 0.320  -1.346 2.256  "H2'2" 68Z 34 
68Z "H3'"  "H3'"  H 0 1 N N N -14.139 -17.089 22.177 -1.986 -1.662 2.988  "H3'"  68Z 35 
68Z "H1'"  "H1'"  H 0 1 N N N -11.180 -16.418 20.215 0.981  -1.654 0.036  "H1'"  68Z 36 
68Z H21N   H21N   H 0 0 N N N -7.977  -13.116 24.506 4.953  -3.518 -0.800 H21N   68Z 37 
68Z H22N   H22N   H 0 0 N N N -6.262  -13.295 24.661 6.490  -2.853 -0.931 H22N   68Z 38 
68Z H1     H1     H 0 1 N N N -5.149  -14.892 23.430 6.809  -0.551 -0.645 H1     68Z 39 
68Z H7     H7     H 0 1 N N N -6.834  -18.190 20.171 3.445  2.961  0.360  H7     68Z 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
68Z P     O1P    SING N N 1  
68Z P     O2P    DOUB N N 2  
68Z P     "O5'"  SING N N 3  
68Z P     O3P    SING N N 4  
68Z "O5'" "C5'"  SING N N 5  
68Z "C5'" "C4'"  SING N N 6  
68Z "C4'" "C3'"  SING N N 7  
68Z "C4'" "C6'"  SING N N 8  
68Z "C3'" "C2'"  SING N N 9  
68Z "C3'" "O3'"  SING N N 10 
68Z "C2'" "C1'"  SING N N 11 
68Z "C1'" "C6'"  SING N N 12 
68Z "C1'" N9     SING N N 13 
68Z N9    C4     SING N N 14 
68Z N9    C8     SING N N 15 
68Z C4    N3     SING N N 16 
68Z C4    C5     DOUB N N 17 
68Z N3    C2     DOUB N N 18 
68Z C2    N2     SING N N 19 
68Z C2    N1     SING N N 20 
68Z N1    C6     SING N N 21 
68Z C6    O6     DOUB N N 22 
68Z C6    C5     SING N N 23 
68Z C5    N7     SING N N 24 
68Z N7    C8     SING N N 25 
68Z C8    O8     DOUB N N 26 
68Z O1P   H1P    SING N N 27 
68Z O3P   H3P    SING N N 28 
68Z "C5'" "H5'1" SING N N 29 
68Z "C5'" "H5'2" SING N N 30 
68Z "C4'" "H4'"  SING N N 31 
68Z "C3'" "H3'A" SING N N 32 
68Z "C6'" "H6'1" SING N N 33 
68Z "C6'" "H6'2" SING N N 34 
68Z "C2'" "H2'1" SING N N 35 
68Z "C2'" "H2'2" SING N N 36 
68Z "O3'" "H3'"  SING N N 37 
68Z "C1'" "H1'"  SING N N 38 
68Z N2    H21N   SING N N 39 
68Z N2    H22N   SING N N 40 
68Z N1    H1     SING N N 41 
68Z N7    H7     SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
68Z SMILES           ACDLabs              12.01 "O=P(O)(O)OCC3CC(N2C=1N=C(NC(=O)C=1NC2=O)N)CC3O"                                                                                                                    
68Z InChI            InChI                1.03  "InChI=1S/C11H16N5O7P/c12-10-14-8-7(9(18)15-10)13-11(19)16(8)5-1-4(6(17)2-5)3-23-24(20,21)22/h4-6,17H,1-3H2,(H,13,19)(H2,20,21,22)(H3,12,14,15,18)/t4-,5-,6+/m1/s1" 
68Z InChIKey         InChI                1.03  BSPDUIDJPVHVQJ-PBXRRBTRSA-N                                                                                                                                         
68Z SMILES_CANONICAL CACTVS               3.385 "NC1=NC2=C(NC(=O)N2[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)C3)C(=O)N1"                                                                                                  
68Z SMILES           CACTVS               3.385 "NC1=NC2=C(NC(=O)N2[CH]3C[CH](O)[CH](CO[P](O)(O)=O)C3)C(=O)N1"                                                                                                      
68Z SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C1[C@H](C[C@@H]([C@H]1COP(=O)(O)O)O)N2C3=C(C(=O)NC(=N3)N)NC2=O"                                                                                                    
68Z SMILES           "OpenEye OEToolkits" 1.9.2 "C1C(CC(C1COP(=O)(O)O)O)N2C3=C(C(=O)NC(=N3)N)NC2=O"                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
68Z "SYSTEMATIC NAME" ACDLabs              12.01 "[(1R,2S,4R)-4-(2-amino-6,8-dioxo-1,6,7,8-tetrahydro-9H-purin-9-yl)-2-hydroxycyclopentyl]methyl dihydrogen phosphate"      
68Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(1R,2S,4R)-4-[2-azanyl-6,8-bis(oxidanylidene)-1,7-dihydropurin-9-yl]-2-oxidanyl-cyclopentyl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
68Z "Create component"       2013-12-15 EBI  
68Z "Modify linking type"    2014-01-02 EBI  
68Z "Modify parent residue"  2014-01-02 EBI  
68Z "Modify one letter code" 2014-01-02 EBI  
68Z "Initial release"        2014-06-04 RCSB 
68Z "Modify descriptor"      2014-09-05 RCSB 
# 
