data_I2Z
# 
_chem_comp.id                                    I2Z 
_chem_comp.name                                  "6-amino-1-benzyl-5-(methylamino)pyrimidine-2,4(1H,3H)-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H16 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-09 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        248.281 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I2Z 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7R4P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I2Z N1  N1  N 0 1 N N N 6.231 31.486 32.146 2.038  -0.700 -2.251 N1  I2Z 1  
I2Z N3  N2  N 0 1 N N N 5.497 31.035 28.205 2.022  -1.008 1.078  N3  I2Z 2  
I2Z C4  C1  C 0 1 Y N N 4.908 33.982 31.813 -2.029 -0.572 -0.448 C4  I2Z 3  
I2Z C5  C2  C 0 1 Y N N 3.631 33.424 31.792 -2.602 -0.880 0.772  C5  I2Z 4  
I2Z C6  C3  C 0 1 Y N N 2.853 33.461 32.927 -3.589 -0.067 1.297  C6  I2Z 5  
I2Z C7  C4  C 0 1 Y N N 3.358 34.110 34.098 -4.002 1.055  0.603  C7  I2Z 6  
I2Z C8  C5  C 0 1 Y N N 4.605 34.693 34.096 -3.429 1.363  -0.616 C8  I2Z 7  
I2Z C10 C6  C 0 1 N N N 5.615 32.372 28.655 0.875  -1.485 0.567  C10 I2Z 8  
I2Z O1  O1  O 0 1 N N N 5.582 33.334 27.929 0.292  -2.378 1.150  O1  I2Z 9  
I2Z C11 C7  C 0 1 N N N 5.442 30.011 29.189 2.571  0.127  0.608  C11 I2Z 10 
I2Z O   O2  O 0 1 N N N 5.281 28.853 28.975 3.647  0.498  1.025  O   I2Z 11 
I2Z C1  C8  C 0 1 N N R 5.578 30.400 30.422 1.848  0.936  -0.439 C1  I2Z 12 
I2Z N   N3  N 0 1 N N N 5.157 29.824 31.418 0.900  1.849  0.214  N   I2Z 13 
I2Z C   C9  C 0 1 N N N 3.714 30.084 31.507 1.565  3.093  0.625  C   I2Z 14 
I2Z N2  N4  N 0 1 N N N 5.750 32.508 30.029 0.356  -0.998 -0.572 N2  I2Z 15 
I2Z C2  C10 C 0 1 N N S 5.803 31.478 30.838 1.087  -0.011 -1.370 C2  I2Z 16 
I2Z C3  C11 C 0 1 N N N 5.752 33.896 30.599 -0.958 -1.462 -1.023 C3  I2Z 17 
I2Z C9  C12 C 0 1 Y N N 5.411 34.622 32.961 -2.443 0.550  -1.142 C9  I2Z 18 
I2Z H1  H1  H 0 1 N N N 6.165 30.563 32.524 1.560  -1.332 -2.876 H1  I2Z 19 
I2Z H2  H2  H 0 1 N N N 7.181 31.795 32.184 2.599  -0.038 -2.766 H2  I2Z 20 
I2Z H4  H4  H 0 1 N N N 5.454 30.819 27.230 2.459  -1.487 1.799  H4  I2Z 21 
I2Z H5  H5  H 0 1 N N N 3.254 32.965 30.890 -2.279 -1.756 1.314  H5  I2Z 22 
I2Z H6  H6  H 0 1 N N N 1.874 33.006 32.934 -4.037 -0.308 2.250  H6  I2Z 23 
I2Z H7  H7  H 0 1 N N N 2.754 34.143 34.993 -4.774 1.690  1.014  H7  I2Z 24 
I2Z H8  H8  H 0 1 N N N 4.960 35.207 34.977 -3.753 2.239  -1.159 H8  I2Z 25 
I2Z H9  H9  H 0 1 N N N 6.610 30.032 30.523 2.570  1.513  -1.017 H9  I2Z 26 
I2Z H10 H10 H 0 1 N N N 5.322 28.841 31.338 0.112  2.042  -0.385 H10 I2Z 27 
I2Z H12 H12 H 0 1 N N N 3.304 29.579 32.394 1.981  3.589  -0.252 H12 I2Z 28 
I2Z H13 H13 H 0 1 N N N 3.541 31.167 31.589 0.841  3.750  1.106  H13 I2Z 29 
I2Z H14 H14 H 0 1 N N N 3.216 29.701 30.604 2.368  2.861  1.326  H14 I2Z 30 
I2Z H15 H15 H 0 1 N N N 4.756 31.621 31.145 0.382  0.562  -1.973 H15 I2Z 31 
I2Z H16 H16 H 0 1 N N N 6.784 34.174 30.860 -1.117 -2.486 -0.687 H16 I2Z 32 
I2Z H17 H17 H 0 1 N N N 5.364 34.594 29.843 -1.002 -1.426 -2.112 H17 I2Z 33 
I2Z H18 H18 H 0 1 N N N 6.403 35.050 32.963 -1.996 0.791  -2.095 H18 I2Z 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I2Z O1  C10 DOUB N N 1  
I2Z N3  C10 SING N N 2  
I2Z N3  C11 SING N N 3  
I2Z C10 N2  SING N N 4  
I2Z O   C11 DOUB N N 5  
I2Z C11 C1  SING N N 6  
I2Z N2  C3  SING N N 7  
I2Z N2  C2  SING N N 8  
I2Z C1  C2  SING N N 9  
I2Z C1  N   SING N N 10 
I2Z C3  C4  SING N N 11 
I2Z C2  N1  SING N N 12 
I2Z N   C   SING N N 13 
I2Z C5  C4  DOUB Y N 14 
I2Z C5  C6  SING Y N 15 
I2Z C4  C9  SING Y N 16 
I2Z C6  C7  DOUB Y N 17 
I2Z C9  C8  DOUB Y N 18 
I2Z C8  C7  SING Y N 19 
I2Z N1  H1  SING N N 20 
I2Z N1  H2  SING N N 21 
I2Z N3  H4  SING N N 22 
I2Z C5  H5  SING N N 23 
I2Z C6  H6  SING N N 24 
I2Z C7  H7  SING N N 25 
I2Z C8  H8  SING N N 26 
I2Z C1  H9  SING N N 27 
I2Z N   H10 SING N N 28 
I2Z C   H12 SING N N 29 
I2Z C   H13 SING N N 30 
I2Z C   H14 SING N N 31 
I2Z C2  H15 SING N N 32 
I2Z C3  H16 SING N N 33 
I2Z C3  H17 SING N N 34 
I2Z C9  H18 SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I2Z InChI            InChI                1.06  "InChI=1S/C12H16N4O2/c1-14-9-10(13)16(12(18)15-11(9)17)7-8-5-3-2-4-6-8/h2-6,9-10,14H,7,13H2,1H3,(H,15,17,18)/t9-,10+/m1/s1" 
I2Z InChIKey         InChI                1.06  ROGMXQYZAWKCLY-ZJUUUORDSA-N                                                                                                 
I2Z SMILES_CANONICAL CACTVS               3.385 "CN[C@@H]1[C@@H](N)N(Cc2ccccc2)C(=O)NC1=O"                                                                                  
I2Z SMILES           CACTVS               3.385 "CN[CH]1[CH](N)N(Cc2ccccc2)C(=O)NC1=O"                                                                                      
I2Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN[C@@H]1C(N(C(=O)NC1=O)Cc2ccccc2)N"                                                                                       
I2Z SMILES           "OpenEye OEToolkits" 2.0.7 "CNC1C(N(C(=O)NC1=O)Cc2ccccc2)N"                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           I2Z 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(5~{R})-6-azanyl-5-(methylamino)-1-(phenylmethyl)-1,3-diazinane-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I2Z "Create component"  2022-02-09 PDBE 
I2Z "Initial release"   2022-05-04 RCSB 
I2Z "Modify descriptor" 2022-08-22 RCSB 
# 
