data_JFZ
#

_chem_comp.id                                   JFZ
_chem_comp.name                                 "4-nitrophenyl 6-deoxy-alpha-L-galactopyranoside"
_chem_comp.type                                 L-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H15 N O7"
_chem_comp.mon_nstd_parent_comp_id              FUC
_chem_comp.pdbx_synonyms                        
;4-nitrophenyl-alpha-L-fucose; 4-nitrophenyl 6-deoxy-alpha-L-galactoside; 4-nitrophenyl 6-deoxy-L-galactoside;
4-nitrophenyl 6-deoxy-galactoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-02-19
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       285.250
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JFZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2WVU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  JFZ  4-nitrophenyl-alpha-L-fucose                 PDB  ?  
2  JFZ  "4-nitrophenyl 6-deoxy-alpha-L-galactoside"  PDB  ?  
3  JFZ  "4-nitrophenyl 6-deoxy-L-galactoside"        PDB  ?  
4  JFZ  "4-nitrophenyl 6-deoxy-galactoside"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JFZ  C1     C1     C   0  1  N  N  S  17.944  -54.251  -39.976   1.319   0.451  -0.878  C1     JFZ   1  
JFZ  C2     C2     C   0  1  N  N  S  18.937  -54.474  -38.816   2.746   0.991  -0.748  C2     JFZ   2  
JFZ  O2     O2     O   0  1  N  N  N  19.537  -55.751  -38.879   2.725   2.418  -0.828  O2     JFZ   3  
JFZ  C3     C3     C   0  1  N  N  R  19.998  -53.349  -38.776   3.325   0.563   0.604  C3     JFZ   4  
JFZ  O3     O3     O   0  1  N  N  N  21.107  -53.568  -38.297   4.681   1.000   0.704  O3     JFZ   5  
JFZ  C4     C4     C   0  1  N  N  S  19.534  -51.907  -38.975   3.270  -0.964   0.710  C4     JFZ   6  
JFZ  O4     O4     O   0  1  N  N  N  19.034  -51.554  -37.677   4.092  -1.543  -0.306  O4     JFZ   7  
JFZ  C5     C5     C   0  1  N  N  S  18.393  -51.812  -40.020   1.823  -1.429   0.524  C5     JFZ   8  
JFZ  C6     C6     C   0  1  N  N  N  17.619  -50.485  -39.964   1.769  -2.958   0.568  C6     JFZ   9  
JFZ  O5     O5     O   0  1  N  N  N  17.393  -52.898  -39.865   1.336  -0.971  -0.739  O5     JFZ  10  
JFZ  O1     "O1'"  O   0  1  N  N  N  18.592  -54.527  -41.267   0.499   1.020   0.145  O1     JFZ  11  
JFZ  "C1'"  "C1'"  C   0  1  Y  N  N  17.815  -54.591  -42.400  -0.826   0.723   0.109  "C1'"  JFZ  12  
JFZ  "C2'"  "C2'"  C   0  1  Y  N  N  18.429  -54.301  -43.624  -1.327  -0.104  -0.887  "C2'"  JFZ  13  
JFZ  "C3'"  "C3'"  C   0  1  Y  N  N  17.695  -54.358  -44.807  -2.674  -0.409  -0.918  "C3'"  JFZ  14  
JFZ  "C4'"  "C4'"  C   0  1  Y  N  N  16.344  -54.713  -44.769  -3.523   0.109   0.042  "C4'"  JFZ  15  
JFZ  "C5'"  "C5'"  C   0  1  Y  N  N  15.728  -55.014  -43.547  -3.027   0.933   1.035  "C5'"  JFZ  16  
JFZ  "C6'"  "C6'"  C   0  1  Y  N  N  16.461  -54.956  -42.362  -1.681   1.241   1.071  "C6'"  JFZ  17  
JFZ  "N1'"  "N1'"  N   1  1  N  N  N  15.636  -54.767  -45.901  -4.966  -0.219   0.007  "N1'"  JFZ  18  
JFZ  "O2'"  "O2'"  O   0  1  N  N  N  14.540  -55.665  -45.998  -5.404  -0.945  -0.868  "O2'"  JFZ  19  
JFZ  "O3'"  "O3'"  O  -1  1  N  N  N  15.955  -53.917  -47.016  -5.715   0.236   0.852  "O3'"  JFZ  20  
JFZ  H1     H1     H   0  1  N  N  N  17.121  -54.969  -39.845   0.918   0.716  -1.856  H1     JFZ  21  
JFZ  H2     H2     H   0  1  N  N  N  18.360  -54.403  -37.882   3.362   0.589  -1.552  H2     JFZ  22  
JFZ  HO2    H3     H   0  1  N  Y  N  20.140  -55.854  -38.152   2.365   2.760  -1.658  HO2    JFZ  23  
JFZ  H4     H4     H   0  1  N  N  N  20.378  -51.269  -39.276   3.630  -1.275   1.691  H4     JFZ  24  
JFZ  HO4    H5     H   0  1  N  Y  N  19.736  -51.613  -37.040   4.104  -2.510  -0.298  HO4    JFZ  25  
JFZ  H5     H6     H   0  1  N  N  N  18.847  -51.895  -41.019   1.204  -1.020   1.322  H5     JFZ  26  
JFZ  H61    H7     H   0  1  N  N  N  18.321  -49.645  -40.075   2.388  -3.367  -0.230  H61    JFZ  27  
JFZ  H62    H8     H   0  1  N  N  N  16.881  -50.456  -40.779   2.140  -3.307   1.531  H62    JFZ  28  
JFZ  H63    H9     H   0  1  N  N  N  17.100  -50.404  -38.997   0.739  -3.289   0.434  H63    JFZ  29  
JFZ  H10    H10    H   0  1  N  N  N  19.475  -54.032  -43.652  -0.664  -0.508  -1.637  H10    JFZ  30  
JFZ  H11    H11    H   0  1  N  N  N  18.169  -54.129  -45.750  -3.064  -1.052  -1.693  H11    JFZ  31  
JFZ  H12    H12    H   0  1  N  N  N  14.684  -55.291  -43.523  -3.693   1.337   1.784  H12    JFZ  32  
JFZ  H13    H13    H   0  1  N  N  N  15.989  -55.191  -41.420  -1.293   1.881   1.849  H13    JFZ  33  
JFZ  H3     H14    H   0  1  N  N  N  20.305  -53.485  -39.823   2.738   1.007   1.409  H3     JFZ  34  
JFZ  HO3    H15    H   0  1  N  Y  N  21.247  -54.506  -38.237   4.791   1.959   0.638  HO3    JFZ  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JFZ  "O3'"  "N1'"  SING  N  N   1  
JFZ  "O2'"  "N1'"  DOUB  N  N   2  
JFZ  "N1'"  "C4'"  SING  N  N   3  
JFZ  "C3'"  "C4'"  DOUB  Y  N   4  
JFZ  "C3'"  "C2'"  SING  Y  N   5  
JFZ  "C4'"  "C5'"  SING  Y  N   6  
JFZ  "C2'"  "C1'"  DOUB  Y  N   7  
JFZ  "C5'"  "C6'"  DOUB  Y  N   8  
JFZ  "C1'"  "C6'"  SING  Y  N   9  
JFZ  "C1'"  O1     SING  N  N  10  
JFZ  O1     C1     SING  N  N  11  
JFZ  C5     C6     SING  N  N  12  
JFZ  C5     O5     SING  N  N  13  
JFZ  C5     C4     SING  N  N  14  
JFZ  C1     O5     SING  N  N  15  
JFZ  C1     C2     SING  N  N  16  
JFZ  C4     C3     SING  N  N  17  
JFZ  C4     O4     SING  N  N  18  
JFZ  O2     C2     SING  N  N  19  
JFZ  C2     C3     SING  N  N  20  
JFZ  C3     O3     SING  N  N  21  
JFZ  C1     H1     SING  N  N  22  
JFZ  C2     H2     SING  N  N  23  
JFZ  O2     HO2    SING  N  N  24  
JFZ  C4     H4     SING  N  N  25  
JFZ  O4     HO4    SING  N  N  26  
JFZ  C5     H5     SING  N  N  27  
JFZ  C6     H61    SING  N  N  28  
JFZ  C6     H62    SING  N  N  29  
JFZ  C6     H63    SING  N  N  30  
JFZ  "C2'"  H10    SING  N  N  31  
JFZ  "C3'"  H11    SING  N  N  32  
JFZ  "C5'"  H12    SING  N  N  33  
JFZ  "C6'"  H13    SING  N  N  34  
JFZ  C3     H3     SING  N  N  35  
JFZ  O3     HO3    SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JFZ  InChI             InChI                 1.03   "InChI=1S/C12H15NO7/c1-6-9(14)10(15)11(16)12(19-6)20-8-4-2-7(3-5-8)13(17)18/h2-6,9-12,14-16H,1H3/t6-,9+,10+,11-,12-/m0/s1"  
JFZ  InChIKey          InChI                 1.03   YILIDCGSXCGACV-SQKFTNEHSA-N  
JFZ  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1O[C@@H](Oc2ccc(cc2)[N+]([O-])=O)[C@@H](O)[C@H](O)[C@@H]1O"  
JFZ  SMILES            CACTVS                3.385  "C[CH]1O[CH](Oc2ccc(cc2)[N+]([O-])=O)[CH](O)[CH](O)[CH]1O"  
JFZ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)Oc2ccc(cc2)[N+](=O)[O-])O)O)O"  
JFZ  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1C(C(C(C(O1)Oc2ccc(cc2)[N+](=O)[O-])O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          JFZ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S},3~{S},4~{R},5~{S},6~{S})-2-methyl-6-(4-nitrophenoxy)oxane-3,4,5-triol"
#
_pdbx_chem_comp_related.comp_id            JFZ
_pdbx_chem_comp_related.related_comp_id    FUC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  JFZ  C1   FUC  C1   "Carbohydrate core"  
 2  JFZ  C2   FUC  C2   "Carbohydrate core"  
 3  JFZ  C3   FUC  C3   "Carbohydrate core"  
 4  JFZ  C4   FUC  C4   "Carbohydrate core"  
 5  JFZ  C5   FUC  C5   "Carbohydrate core"  
 6  JFZ  C6   FUC  C6   "Carbohydrate core"  
 7  JFZ  O1   FUC  O1   "Carbohydrate core"  
 8  JFZ  O2   FUC  O2   "Carbohydrate core"  
 9  JFZ  O3   FUC  O3   "Carbohydrate core"  
10  JFZ  O4   FUC  O4   "Carbohydrate core"  
11  JFZ  O5   FUC  O5   "Carbohydrate core"  
12  JFZ  H1   FUC  H1   "Carbohydrate core"  
13  JFZ  H3   FUC  H3   "Carbohydrate core"  
14  JFZ  HO3  FUC  HO3  "Carbohydrate core"  
15  JFZ  H2   FUC  H2   "Carbohydrate core"  
16  JFZ  HO2  FUC  HO2  "Carbohydrate core"  
17  JFZ  H4   FUC  H4   "Carbohydrate core"  
18  JFZ  HO4  FUC  HO4  "Carbohydrate core"  
19  JFZ  H5   FUC  H5   "Carbohydrate core"  
20  JFZ  H61  FUC  H61  "Carbohydrate core"  
21  JFZ  H62  FUC  H62  "Carbohydrate core"  
22  JFZ  H63  FUC  H63  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
JFZ  "CARBOHYDRATE ISOMER"                  L         PDB  ?  
JFZ  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
JFZ  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
JFZ  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JFZ  "Create component"          2019-02-19  EBI   
JFZ  "Initial release"           2019-02-27  RCSB  
JFZ  "Other modification"        2020-07-03  RCSB  
JFZ  "Modify parent residue"     2020-07-17  RCSB  
JFZ  "Modify name"               2020-07-17  RCSB  
JFZ  "Modify synonyms"           2020-07-17  RCSB  
JFZ  "Modify internal type"      2020-07-17  RCSB  
JFZ  "Modify linking type"       2020-07-17  RCSB  
JFZ  "Modify atom id"            2020-07-17  RCSB  
JFZ  "Modify component atom id"  2020-07-17  RCSB  
JFZ  "Modify leaving atom flag"  2020-07-17  RCSB  
##
