data_K2Z
# 
_chem_comp.id                                    K2Z 
_chem_comp.name                                  "benzyl [(1S)-1-{[(1S,2S)-1-ethyl-2-hydroxy-3-{[3-(4-methylpiperazin-1-yl)propyl]amino}-3-oxopropyl]carbamoyl}-3-methylbutyl]carbamate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H45 N5 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2007-12-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        519.677 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     K2Z 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2R9F 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
K2Z CAU  CAU  C 0 1 N N N N N N -2.729  3.601  23.079 -9.024  -1.398 -0.258 CAU  K2Z 1  
K2Z CAS  CAS  C 0 1 N N N N N N -1.791  2.462  22.663 -9.453  -2.703 -0.933 CAS  K2Z 2  
K2Z NBK  NBK  N 0 1 N N N N N N -0.635  3.026  21.949 -8.734  -3.828 -0.319 NBK  K2Z 3  
K2Z CAE  CAE  C 0 1 N N N N N N 0.264   1.920  21.568 -9.175  -5.108 -0.889 CAE  K2Z 4  
K2Z CAT  CAT  C 0 1 N N N N N N -1.104  3.739  20.750 -7.281  -3.661 -0.461 CAT  K2Z 5  
K2Z CAV  CAV  C 0 1 N N N N N N -2.033  4.887  21.189 -6.851  -2.356 0.213  CAV  K2Z 6  
K2Z NBL  NBL  N 0 1 N N N N N N -3.204  4.337  21.888 -7.570  -1.231 -0.401 NBL  K2Z 7  
K2Z CAR  CAR  C 0 1 N N N N N N -4.108  5.448  22.262 -7.129  0.049  0.169  CAR  K2Z 8  
K2Z CAP  CAP  C 0 1 N N N N N N -5.494  4.912  22.664 -5.670  0.302  -0.214 CAP  K2Z 9  
K2Z CAQ  CAQ  C 0 1 N N N N N N -6.575  5.700  21.947 -5.210  1.636  0.379  CAQ  K2Z 10 
K2Z NAY  NAY  N 0 1 N N N N N N -7.940  5.305  22.361 -3.813  1.878  0.012  NAY  K2Z 11 
K2Z CBF  CBF  C 0 1 N N N N N N -8.937  5.323  21.482 -3.192  3.000  0.427  CBF  K2Z 12 
K2Z OAH  OAH  O 0 1 N N N N N N -8.830  5.635  20.297 -3.790  3.809  1.104  OAH  K2Z 13 
K2Z CBM  CBM  C 0 1 N N S N N N -10.333 4.962  21.994 -1.755  3.249  0.049  CBM  K2Z 14 
K2Z OAI  OAI  O 0 1 N N N N N N -10.421 4.097  23.137 -1.360  4.545  0.504  OAI  K2Z 15 
K2Z CBJ  CBJ  C 0 1 N N S N N N -11.263 6.180  22.004 -0.865  2.188  0.701  CBJ  K2Z 16 
K2Z CAO  CAO  C 0 1 N N N N N N -10.775 7.269  22.985 -0.917  2.343  2.222  CAO  K2Z 17 
K2Z CAA  CAA  C 0 1 N N N N N N -11.671 8.517  22.916 -0.128  1.208  2.878  CAA  K2Z 18 
K2Z NBA  NBA  N 0 1 N N N N N N -12.630 5.716  22.326 0.515   2.358  0.240  NBA  K2Z 19 
K2Z C    C    C 0 1 N N N N N N -13.692 6.111  21.621 1.361   1.309  0.246  C    K2Z 20 
K2Z O    O    O 0 1 N N N N N N -13.650 6.887  20.655 0.980   0.225  0.634  O    K2Z 21 
K2Z CA   CA   C 0 1 N N S N N N -15.036 5.537  22.117 2.781   1.483  -0.229 CA   K2Z 22 
K2Z CB   CB   C 0 1 N N N N N N -15.336 4.229  21.369 2.778   1.946  -1.687 CB   K2Z 23 
K2Z CG   CG   C 0 1 N N N N N N -16.615 3.542  21.886 4.212   2.243  -2.131 CG   K2Z 24 
K2Z CD2  CD2  C 0 1 N N N N N N -16.816 2.216  21.143 4.223   2.586  -3.622 CD2  K2Z 25 
K2Z CD1  CD1  C 0 1 N N N N N N -16.578 3.278  23.401 4.759   3.427  -1.331 CD1  K2Z 26 
K2Z N    N    N 0 1 N N N N N N -16.086 6.531  21.856 3.491   0.206  -0.124 N    K2Z 27 
K2Z CBD  CBD  C 0 1 N N N N N N -16.120 7.715  22.481 4.833   0.190  0.003  CBD  K2Z 28 
K2Z OAF  OAF  O 0 1 N N N N N N -15.302 8.030  23.359 5.453   1.234  0.031  OAF  K2Z 29 
K2Z OBB  OBB  O 0 1 N N N N N N -17.128 8.566  22.132 5.486   -0.984 0.100  OBB  K2Z 30 
K2Z CAW  CAW  C 0 1 N N N N N N -16.816 9.982  22.262 6.930   -0.926 0.234  CAW  K2Z 31 
K2Z CBG  CBG  C 0 1 Y N N N N N -17.208 10.896 21.275 7.483   -2.325 0.328  CBG  K2Z 32 
K2Z CAM  CAM  C 0 1 Y N N N N N -18.419 10.727 20.587 7.849   -3.002 -0.820 CAM  K2Z 33 
K2Z CAK  CAK  C 0 1 Y N N N N N -18.806 11.648 19.605 8.356   -4.285 -0.734 CAK  K2Z 34 
K2Z CAJ  CAJ  C 0 1 Y N N N N N -17.977 12.739 19.310 8.497   -4.891 0.500  CAJ  K2Z 35 
K2Z CAL  CAL  C 0 1 Y N N N N N -16.768 12.911 19.997 8.132   -4.214 1.648  CAL  K2Z 36 
K2Z CAN  CAN  C 0 1 Y N N N N N -16.386 11.990 20.979 7.629   -2.929 1.563  CAN  K2Z 37 
K2Z HAU  HAU  H 0 1 N N N N N N -3.594  3.180  23.612 -9.534  -0.559 -0.731 HAU  K2Z 38 
K2Z HAUA HAUA H 0 0 N N N N N N -2.181  4.295  23.733 -9.284  -1.432 0.800  HAUA K2Z 39 
K2Z HAS  HAS  H 0 1 N N N N N N -1.445  1.924  23.558 -10.526 -2.843 -0.803 HAS  K2Z 40 
K2Z HASA HASA H 0 0 N N N N N N -2.327  1.763  22.005 -9.217  -2.657 -1.996 HASA K2Z 41 
K2Z HAE  HAE  H 0 1 N N N N N N 0.488   1.982  20.493 -8.983  -5.114 -1.962 HAE  K2Z 42 
K2Z HAEA HAEA H 0 0 N N N N N N 1.200   1.994  22.142 -8.627  -5.924 -0.417 HAEA K2Z 43 
K2Z HAEB HAEB H 0 0 N N N N N N -0.225  0.959  21.785 -10.242 -5.237 -0.710 HAEB K2Z 44 
K2Z HAT  HAT  H 0 1 N N N N N N -0.243  4.148  20.201 -6.770  -4.500 0.012  HAT  K2Z 45 
K2Z HATA HATA H 0 0 N N N N N N -1.650  3.046  20.092 -7.021  -3.626 -1.519 HATA K2Z 46 
K2Z HAV  HAV  H 0 1 N N N N N N -1.487  5.561  21.866 -7.087  -2.401 1.276  HAV  K2Z 47 
K2Z HAVA HAVA H 0 0 N N N N N N -2.367  5.445  20.302 -5.778  -2.215 0.083  HAVA K2Z 48 
K2Z HAR  HAR  H 0 1 N N N N N N -3.674  5.993  23.113 -7.752  0.855  -0.221 HAR  K2Z 49 
K2Z HARA HARA H 0 0 N N N N N N -4.225  6.116  21.396 -7.219  0.014  1.255  HARA K2Z 50 
K2Z HAP  HAP  H 0 1 N N N N N N -5.570  3.851  22.385 -5.047  -0.503 0.176  HAP  K2Z 51 
K2Z HAPA HAPA H 0 0 N N N N N N -5.625  5.019  23.751 -5.580  0.338  -1.300 HAPA K2Z 52 
K2Z HAQ  HAQ  H 0 1 N N N N N N -6.437  6.767  22.177 -5.833  2.441  -0.011 HAQ  K2Z 53 
K2Z HAQA HAQA H 0 0 N N N N N N -6.480  5.494  20.871 -5.300  1.600  1.465  HAQA K2Z 54 
K2Z HNAY HNAY H 0 0 N N N N N N -8.113  5.024  23.305 -3.335  1.231  -0.529 HNAY K2Z 55 
K2Z HBM  HBM  H 0 1 N N N N N N -10.728 4.269  21.237 -1.649  3.196  -1.034 HBM  K2Z 56 
K2Z HOAI HOAI H 0 0 N N N N N N -10.440 3.192  22.849 -1.429  4.664  1.461  HOAI K2Z 57 
K2Z HBJ  HBJ  H 0 1 N N N N N N -11.261 6.653  21.011 -1.221  1.196  0.425  HBJ  K2Z 58 
K2Z HAO  HAO  H 0 1 N N N N N N -10.802 6.866  24.008 -0.479  3.300  2.505  HAO  K2Z 59 
K2Z HAOA HAOA H 0 0 N N N N N N -9.750  7.557  22.707 -1.954  2.306  2.556  HAOA K2Z 60 
K2Z HAA  HAA  H 0 1 N N N N N N -11.885 8.872  23.935 -0.567  0.251  2.595  HAA  K2Z 61 
K2Z HAAA HAAA H 0 0 N N N N N N -11.155 9.308  22.353 0.908   1.245  2.544  HAAA K2Z 62 
K2Z HAAB HAAB H 0 0 N N N N N N -12.615 8.263  22.411 -0.165  1.318  3.962  HAAB K2Z 63 
K2Z HNBA HNBA H 0 0 N N N N N N -12.762 5.089  23.094 0.820   3.225  -0.071 HNBA K2Z 64 
K2Z HA   HA   H 0 1 N N N N N N -14.993 5.322  23.195 3.282   2.229  0.389  HA   K2Z 65 
K2Z HB   HB   H 0 1 N N N N N N -15.469 4.459  20.301 2.358   1.162  -2.316 HB   K2Z 66 
K2Z HBA  HBA  H 0 1 N N N N N N -14.492 3.543  21.534 2.175   2.850  -1.780 HBA  K2Z 67 
K2Z HG   HG   H 0 1 N N N N N N -17.454 4.227  21.695 4.835   1.367  -1.954 HG   K2Z 68 
K2Z HD2  HD2  H 0 1 N N N N N N -16.864 2.405  20.060 3.600   3.463  -3.798 HD2  K2Z 69 
K2Z HD2A HD2A H 0 0 N N N N N N -15.974 1.543  21.360 5.245   2.797  -3.938 HD2A K2Z 70 
K2Z HD2B HD2B H 0 0 N N N N N N -17.755 1.748  21.475 3.834   1.743  -4.192 HD2B K2Z 71 
K2Z HD1  HD1  H 0 1 N N N N N N -16.569 2.193  23.585 4.750   3.183  -0.268 HD1  K2Z 72 
K2Z HD1A HD1A H 0 0 N N N N N N -15.671 3.730  23.830 5.780   3.638  -1.647 HD1A K2Z 73 
K2Z HD1B HD1B H 0 0 N N N N N N -17.467 3.722  23.872 4.135   4.304  -1.507 HD1B K2Z 74 
K2Z HN   HN   H 0 1 N N N N N N -16.799 6.316  21.189 2.996   -0.628 -0.146 HN   K2Z 75 
K2Z HAW  HAW  H 0 1 N N N N N N -17.305 10.314 23.190 7.356   -0.424 -0.635 HAW  K2Z 76 
K2Z HAWA HAWA H 0 0 N N N N N N -15.718 10.004 22.204 7.189   -0.372 1.137  HAWA K2Z 77 
K2Z HAM  HAM  H 0 1 N N N N N N -19.055 9.884  20.815 7.738   -2.528 -1.785 HAM  K2Z 78 
K2Z HAK  HAK  H 0 1 N N N N N N -19.739 11.518 19.077 8.641   -4.814 -1.632 HAK  K2Z 79 
K2Z HAJ  HAJ  H 0 1 N N N N N N -18.271 13.449 18.551 8.892   -5.894 0.567  HAJ  K2Z 80 
K2Z HAL  HAL  H 0 1 N N N N N N -16.132 13.753 19.769 8.242   -4.687 2.613  HAL  K2Z 81 
K2Z HAN  HAN  H 0 1 N N N N N N -15.455 12.123 21.510 7.347   -2.398 2.460  HAN  K2Z 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
K2Z CAU CAS  SING N N 1  
K2Z CAU NBL  SING N N 2  
K2Z CAS NBK  SING N N 3  
K2Z NBK CAE  SING N N 4  
K2Z NBK CAT  SING N N 5  
K2Z CAT CAV  SING N N 6  
K2Z CAV NBL  SING N N 7  
K2Z NBL CAR  SING N N 8  
K2Z CAR CAP  SING N N 9  
K2Z CAP CAQ  SING N N 10 
K2Z CAQ NAY  SING N N 11 
K2Z NAY CBF  SING N N 12 
K2Z CBF OAH  DOUB N N 13 
K2Z CBF CBM  SING N N 14 
K2Z CBM OAI  SING N N 15 
K2Z CBM CBJ  SING N N 16 
K2Z CBJ CAO  SING N N 17 
K2Z CBJ NBA  SING N N 18 
K2Z CAO CAA  SING N N 19 
K2Z NBA C    SING N N 20 
K2Z C   O    DOUB N N 21 
K2Z C   CA   SING N N 22 
K2Z CA  CB   SING N N 23 
K2Z CA  N    SING N N 24 
K2Z CB  CG   SING N N 25 
K2Z CG  CD2  SING N N 26 
K2Z CG  CD1  SING N N 27 
K2Z N   CBD  SING N N 28 
K2Z CBD OAF  DOUB N N 29 
K2Z CBD OBB  SING N N 30 
K2Z OBB CAW  SING N N 31 
K2Z CAW CBG  SING N N 32 
K2Z CBG CAM  DOUB Y N 33 
K2Z CBG CAN  SING Y N 34 
K2Z CAM CAK  SING Y N 35 
K2Z CAK CAJ  DOUB Y N 36 
K2Z CAJ CAL  SING Y N 37 
K2Z CAL CAN  DOUB Y N 38 
K2Z CAU HAU  SING N N 39 
K2Z CAU HAUA SING N N 40 
K2Z CAS HAS  SING N N 41 
K2Z CAS HASA SING N N 42 
K2Z CAE HAE  SING N N 43 
K2Z CAE HAEA SING N N 44 
K2Z CAE HAEB SING N N 45 
K2Z CAT HAT  SING N N 46 
K2Z CAT HATA SING N N 47 
K2Z CAV HAV  SING N N 48 
K2Z CAV HAVA SING N N 49 
K2Z CAR HAR  SING N N 50 
K2Z CAR HARA SING N N 51 
K2Z CAP HAP  SING N N 52 
K2Z CAP HAPA SING N N 53 
K2Z CAQ HAQ  SING N N 54 
K2Z CAQ HAQA SING N N 55 
K2Z NAY HNAY SING N N 56 
K2Z CBM HBM  SING N N 57 
K2Z OAI HOAI SING N N 58 
K2Z CBJ HBJ  SING N N 59 
K2Z CAO HAO  SING N N 60 
K2Z CAO HAOA SING N N 61 
K2Z CAA HAA  SING N N 62 
K2Z CAA HAAA SING N N 63 
K2Z CAA HAAB SING N N 64 
K2Z NBA HNBA SING N N 65 
K2Z CA  HA   SING N N 66 
K2Z CB  HB   SING N N 67 
K2Z CB  HBA  SING N N 68 
K2Z CG  HG   SING N N 69 
K2Z CD2 HD2  SING N N 70 
K2Z CD2 HD2A SING N N 71 
K2Z CD2 HD2B SING N N 72 
K2Z CD1 HD1  SING N N 73 
K2Z CD1 HD1A SING N N 74 
K2Z CD1 HD1B SING N N 75 
K2Z N   HN   SING N N 76 
K2Z CAW HAW  SING N N 77 
K2Z CAW HAWA SING N N 78 
K2Z CAM HAM  SING N N 79 
K2Z CAK HAK  SING N N 80 
K2Z CAJ HAJ  SING N N 81 
K2Z CAL HAL  SING N N 82 
K2Z CAN HAN  SING N N 83 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
K2Z SMILES           ACDLabs              10.04 "O=C(OCc1ccccc1)NC(C(=O)NC(CC)C(O)C(=O)NCCCN2CCN(CC2)C)CC(C)C"                                                                                                                                                              
K2Z SMILES_CANONICAL CACTVS               3.341 "CC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)OCc1ccccc1)[C@H](O)C(=O)NCCCN2CCN(C)CC2"                                                                                                                                                  
K2Z SMILES           CACTVS               3.341 "CC[CH](NC(=O)[CH](CC(C)C)NC(=O)OCc1ccccc1)[CH](O)C(=O)NCCCN2CCN(C)CC2"                                                                                                                                                     
K2Z SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC[C@@H]([C@@H](C(=O)NCCCN1CCN(CC1)C)O)NC(=O)[C@H](CC(C)C)NC(=O)OCc2ccccc2"                                                                                                                                                
K2Z SMILES           "OpenEye OEToolkits" 1.5.0 "CCC(C(C(=O)NCCCN1CCN(CC1)C)O)NC(=O)C(CC(C)C)NC(=O)OCc2ccccc2"                                                                                                                                                              
K2Z InChI            InChI                1.03  "InChI=1S/C27H45N5O5/c1-5-22(24(33)26(35)28-12-9-13-32-16-14-31(4)15-17-32)29-25(34)23(18-20(2)3)30-27(36)37-19-21-10-7-6-8-11-21/h6-8,10-11,20,22-24,33H,5,9,12-19H2,1-4H3,(H,28,35)(H,29,34)(H,30,36)/t22-,23-,24-/m0/s1" 
K2Z InChIKey         InChI                1.03  SVPVAMXCDQANIT-HJOGWXRNSA-N                                                                                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
K2Z "SYSTEMATIC NAME" ACDLabs              10.04 "benzyl [(1S)-1-{[(1S,2S)-1-ethyl-2-hydroxy-3-{[3-(4-methylpiperazin-1-yl)propyl]amino}-3-oxopropyl]carbamoyl}-3-methylbutyl]carbamate (non-preferred name)" 
K2Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "phenylmethyl N-[(2S)-1-[[(2S,3S)-2-hydroxy-1-[3-(4-methylpiperazin-1-yl)propylamino]-1-oxo-pentan-3-yl]amino]-4-methyl-1-oxo-pentan-2-yl]carbamate"         
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
K2Z "Create component"     2007-12-08 RCSB 
K2Z "Modify aromatic_flag" 2011-06-04 RCSB 
K2Z "Modify descriptor"    2011-06-04 RCSB 
K2Z "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            K2Z 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CBM 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
